mRNA_H-paniculata_contig11454.944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: UPI0006A751E5 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A751E5) HSP 1 Score: 68.6 bits (166), Expect = 2.630e-12 Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1 Query: 52 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKT 282 MTIEYN +V++ TF+ + SMW+YK K DADG K+RLVA+G Q QG+DY + +P + T++T Sbjct: 73 MTIEYNAIVKSETFDLVPRPSNTNIVRSMWLYKHKYDADGNFKSHKSRLVANGKSQEQGIDYDETFSPVVKPATIRT 149
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A6S7GWB8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GWB8_PARCT) HSP 1 Score: 68.9 bits (167), Expect = 2.140e-11 Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1 Query: 1 NIKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318 NI EA ++E + E+N L++ GT+ P D + S W++K K ADG V KARLVA G Q +G+DY ++ +P + ++++ A+AN L I Sbjct: 555 NISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEI 660
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 68.9 bits (167), Expect = 2.220e-11 Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1 Query: 1 NIKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318 NI EA ++E + E+N L++ GT+ P D + S W++K K ADG V KARLVA G Q +G+DY ++ +P + ++++ A+AN L I Sbjct: 835 NISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEI 940
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: UPI0008724BFD (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI0008724BFD) HSP 1 Score: 67.4 bits (163), Expect = 6.720e-11 Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1 Query: 52 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANE 303 MT+EY+ +V++ TF+ + SMW+YK K DADG G K+RLVA+G Q G+DY + +P + T++T VA E Sbjct: 1 MTVEYDAIVKSETFDLVPRPPNVNIVRSMWLYKHKYDADGNFKGHKSRLVANGKSQEHGIDYDETFSPIVKPATIRTVLNVALE 84
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A251TQK1_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TQK1_HELAN) HSP 1 Score: 63.9 bits (154), Expect = 9.970e-11 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 52 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANE 303 M E L + G + EN + +TI+S W+YK K +G V KARLVA+G Q +G+DY+D AP + TV+T AVA + Sbjct: 10 MEKEIRALEENGIWTLENLPEGKRTIDSKWVYKVKYKPNGEVERYKARLVANGFTQQEGVDYHDTFAPVAKLVTVRTLLAVATK 93
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A8J4CGM5_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CGM5_9CHLO) HSP 1 Score: 62.8 bits (151), Expect = 4.960e-10 Identity = 36/104 (34.62%), Postives = 53/104 (50.96%), Query Frame = 1 Query: 7 KEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318 +EA+NS + M E L GT+ E+P I W+YK K DA+G + KAR VA G KQ++G+D+ ++ AP TV+ A A G+ + Sbjct: 6 EEAINSPEAVHWRQAMDEEIASLHAQGTWRLEHPPQGANVIPGKWVYKLKRDANGGIERYKARYVAKGYKQIEGVDFDEVFAPTGCHATVRAFLASAAAEGMEV 109
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: O04013_VOLCA (Reverse transcriptase, gag, polyprotein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=O04013_VOLCA) HSP 1 Score: 64.7 bits (156), Expect = 6.800e-10 Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = 1 Query: 7 KEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318 +EA+ S Q + M E L + GT+ E+P + W+YK K+ ADG V KAR VA G QV+G+DY ++ AP + TV+ + A G+ + Sbjct: 848 QEAIKSPQADMWWEAMEEEIASLHRLGTWRLEHPPPDANVVPGRWVYKVKSGADGEVERYKARFVAKGYMQVEGVDYDEVFAPTSNHATVRAFSPKAAAKGIEV 951
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: UPI00077A73AE (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A73AE) HSP 1 Score: 62.4 bits (150), Expect = 7.620e-10 Identity = 33/105 (31.43%), Postives = 53/105 (50.48%), Query Frame = 1 Query: 4 IKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318 +KEA++ + + EY+ L+ T+ P + S W+ K K DA+G + KARLVA G Q QG+DY ++ +P + +T A+AN L + Sbjct: 63 MKEALDGKNSKQWKEALDAEYSSLINNETWELVPPPLDANIVGSKWVLKVKRDANGNINQYKARLVAQGYSQTQGIDYEEVFSPVARYSSSRTLLALANAYNLEV 167
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A5N5I1R6_9ROSA (DNA polymerase zeta catalytic subunit-like n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5I1R6_9ROSA) HSP 1 Score: 63.2 bits (152), Expect = 2.320e-9 Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 1 Query: 7 KEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVANELGLRI 318 KEA++S + S + +E ++Q T+ + NK + WI+K K ADG + KAR+VA G KQ +GLDY+D +P I +++ +A L I Sbjct: 366 KEAISSPEASFWKEAINVEIESIMQNHTWELVDLPPGNKPLGYKWIFKRKMKADGSIDKYKARIVAKGYKQREGLDYFDTYSPVTRITSIRMLIVIAAIHNLEI 469
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Match: A0A2Z6N6S4_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N6S4_TRISU) HSP 1 Score: 63.2 bits (152), Expect = 2.370e-9 Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1 Query: 52 MTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKWKTDADGMVTGAKARLVASGDKQVQGLDYYDILAPRLSIGTVKTGAAVAN 300 M +E L +TGT+ + K I W+Y+ K +ADG + KARL+A G Q++GLDY+D +P + TV+T A+A+ Sbjct: 896 MRVELEALEKTGTWLLVDLPPTVKPIGCRWVYRIKYNADGSIERYKARLIAKGYNQIEGLDYFDTYSPVAKLTTVRTVIALAS 978 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11454.944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11454.944.1 >prot_H-paniculata_contig11454.944.1 ID=prot_H-paniculata_contig11454.944.1|Name=mRNA_H-paniculata_contig11454.944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp NIKEAVNSEQGSVRHNIMTIEYNGLVQTGTFNRENPSDKNKTINSMWIYKback to top mRNA from alignment at H-paniculata_contig11454:4928..5245+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11454.944.1 ID=mRNA_H-paniculata_contig11454.944.1|Name=mRNA_H-paniculata_contig11454.944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig11454:4928..5245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11454:4928..5245+ >mRNA_H-paniculata_contig11454.944.1 ID=mRNA_H-paniculata_contig11454.944.1|Name=mRNA_H-paniculata_contig11454.944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig11454:4928..5245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |