prot_H-paniculata_contig11421.923.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11421.923.1
Unique Nameprot_H-paniculata_contig11421.923.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length115
Homology
BLAST of mRNA_H-paniculata_contig11421.923.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.000e-7
Identity = 51/113 (45.13%), Postives = 58/113 (51.33%), Query Frame = 0
Query:    3 GGGDREG-EEXXXMEFVFQEEVDDETTLEAEDALAQASGGXXXXXXVDAAAELADLAAEAELPLEELRRRAYGXXXXXSAGEGAPDLLSDEEDFDESNFKQEGAFSSDGFWTE 114
            G G  EG EE    EF F+EEVDDETTLEAE ALA            D A ELA L AEA+LP+EELRR A       +AG                  ++E  FSSDGF +E
Sbjct: 1027 GDGTEEGNEEQEDAEFEFREEVDDETTLEAEAALAGDGD--------DVADELAALRAEADLPIEELRRLA-------AAGHDG---------------EEEEPFSSDGFDSE 1109          
BLAST of mRNA_H-paniculata_contig11421.923.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.730e-5
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 0
Query:    3 GGGDREG-EEXXXMEFVFQEEVDDETTLEAEDALAQASGGXXXXXXVDAAAELADLAAEAELPLEELRRRA 72
            G G  EG +E    EF F+EE DDETTL+AE ALA            D A ELA L AEA+LP+EELRR A
Sbjct:  740 GDGTEEGNDEKEDAEFEFREEADDETTLDAEAALAGDGD--------DVADELAALRAEADLPIEELRRLA 802          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11421.923.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE9.000e-745.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTP0_ECTSI2.730e-553.52Similar to E1a binding protein P400 (Partial) (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11421contigH-paniculata_contig11421:5661..7086 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11421.923.1mRNA_H-paniculata_contig11421.923.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11421 5661..7087 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11421.923.1 ID=prot_H-paniculata_contig11421.923.1|Name=mRNA_H-paniculata_contig11421.923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
GAGGGDREGEEEEEMEFVFQEEVDDETTLEAEDALAQASGGSAAAAAVDA
AAELADLAAEAELPLEELRRRAYGGGGGGSAGEGAPDLLSDEEDFDESNF
KQEGAFSSDGFWTEE
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