mRNA_H-paniculata_contig11421.923.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11421.923.1
Unique NamemRNA_H-paniculata_contig11421.923.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11421.923.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.000e-7
Identity = 51/113 (45.13%), Postives = 58/113 (51.33%), Query Frame = 1 
Query:    7 GGGDREG-EEXXXMEFVFQEEVDDETTLEAEDALAQASGGXXXXXXVDAAAELADLAAEAELPLEELRRRAYGXXXXXSAGEGAPDLLSDEEDFDESNFKQEGAFSSDGFWTE 342
            G G  EG EE    EF F+EEVDDETTLEAE ALA            D A ELA L AEA+LP+EELRR A       +AG                  ++E  FSSDGF +E
Sbjct: 1027 GDGTEEGNEEQEDAEFEFREEVDDETTLEAEAALAGDGD--------DVADELAALRAEADLPIEELRRLA-------AAGHDG---------------EEEEPFSSDGFDSE 1109
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BLAST of mRNA_H-paniculata_contig11421.923.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.730e-5
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    7 GGGDREG-EEXXXMEFVFQEEVDDETTLEAEDALAQASGGXXXXXXVDAAAELADLAAEAELPLEELRRRA 216
            G G  EG +E    EF F+EE DDETTL+AE ALA            D A ELA L AEA+LP+EELRR A
Sbjct:  740 GDGTEEGNDEKEDAEFEFREEADDETTLDAEAALAGDGD--------DVADELAALRAEADLPIEELRRLA 802
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11421.923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE9.000e-745.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTP0_ECTSI2.730e-553.52Similar to E1a binding protein P400 (Partial) (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11421contigH-paniculata_contig11421:5661..7087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928850.8878744-CDS-H-paniculata_contig11421:5660..57561622928850.8878744-CDS-H-paniculata_contig11421:5660..5756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 5661..5756 +
1691480644.3678021-CDS-H-paniculata_contig11421:5660..57561691480644.3678021-CDS-H-paniculata_contig11421:5660..5756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 5661..5756 +
1622928850.8991954-CDS-H-paniculata_contig11421:6837..70861622928850.8991954-CDS-H-paniculata_contig11421:6837..7086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 6838..7086 +
1691480644.3789368-CDS-H-paniculata_contig11421:6837..70861691480644.3789368-CDS-H-paniculata_contig11421:6837..7086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 6838..7086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11421.923.1prot_H-paniculata_contig11421.923.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11421 5661..7086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11421.923.1

>prot_H-paniculata_contig11421.923.1 ID=prot_H-paniculata_contig11421.923.1|Name=mRNA_H-paniculata_contig11421.923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
GAGGGDREGEEEEEMEFVFQEEVDDETTLEAEDALAQASGGSAAAAAVDA
AAELADLAAEAELPLEELRRRAYGGGGGGSAGEGAPDLLSDEEDFDESNF
KQEGAFSSDGFWTEE
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mRNA from alignment at H-paniculata_contig11421:5661..7087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11421.923.1 ID=mRNA_H-paniculata_contig11421.923.1|Name=mRNA_H-paniculata_contig11421.923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1427bp|location=Sequence derived from alignment at H-paniculata_contig11421:5661..7087+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCGGGTGGGGGAGATCGAGAAGGAGAGGAAGAGGAGGAAATGGAGTT
CGTATTTCAAGAAGAGGTGGACGATGAGACAACGCTAGAAGCAGAGGTGA
GGTATATTAGAGATGCGGGAAGCGGATTTTGGAGCAGAGCCTCTGTCTTT
TTTGTGTACTTGAACGTCCACCAAGAGCGACGGCGTTTAGTCGTTTTTAT
TTTTTTCTGTGTATGCCGCGTGGTAATGAATGCGTGGGGTTCGAAGAACT
CAGGCACAGTCGATGATGGCGGCGAGTGCATGCATACCAGGTCGATAATA
CCAGAGGCCATAAGTCGACGGTGCATTTTTCTGGCGGTTCCTGGTTTTGT
GCTCTCGTCACCAGCCACCAGCCACAGCCCATCAGGCCTAAACCTCGTAG
GCGAGTAAAATGTTGAAACATGTGTCCCAATACTAAAACCAAGTCAGAAT
AAAATTTTCACATAAAAACGCATTTAAGACCTTCGGGGTTCCGGTCTACA
GCGCATCCTCCCCTAGTACGTGTTTTTCCTCGAGGAGGAGGAGGGAGGGG
GGTAACTGTAGTCTATGCTTGAAAGTTTCGTACCTGTAAACTATAAAAAA
AAGGGCGTAATGCACTCTGTCAGCGTTTGTTGGCACATTCAAATATCTGT
TTACCCCGCAAAATATTTTTCCTTTTCGTTTGTTTCTAAATATATATATA
TATATATATATATATATATGTTTCAGTGACAACGTACTATCGAAATGTTT
TTGTTAATATCACCTTTTGTTACCCTTACTTGGGGCAATGACAATATGAG
GAGAACAAGGATACCTATATAACTCTTTTGACAGGATTGGCTCTACGGTT
TTATGGAGGAAAAGGGAGGCATTTAAATAGTATTTTATCACAGCCGGTGC
TCTTCCATGGGCTCGGCGCTCCCGCTCCTTTATGATCATATGGGTTTAAA
CAGGGGGCCTGCTGACGTGAATACATGTGGAGCACACATACCCCTTGCCC
CCTCCACCTCCATCCCTTATCCCCATGACGAAGTACGCGAAGAAAAAACA
AGAACGAGGTGTTGTCCAATCTACAAGATCGAAGAAGAAAATGGATGTGA
TGACGTGCGTATACGTTCCGATTTCTGAAATTTTGACTGAGCCTCAATAT
ACATATGATTTGCCAAAATTGTCCCAGGACGCCCTTGCGCAAGCCTCCGG
AGGAAGCGCCGCCGCTGCCGCGGTGGACGCGGCCGCTGAGCTCGCCGATC
TAGCCGCGGAGGCTGAGCTTCCGCTTGAGGAGTTAAGAAGGCGGGCCTAC
GGTGGCGGTGGCGGCGGTAGCGCCGGGGAAGGAGCACCAGATTTGCTGTC
GGATGAAGAAGACTTCGATGAAAGCAACTTCAAACAGGAGGGAGCGTTTT
CTTCTGACGGATTTTGGACGGAGGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11421:5661..7087+

>mRNA_H-paniculata_contig11421.923.1 ID=mRNA_H-paniculata_contig11421.923.1|Name=mRNA_H-paniculata_contig11421.923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig11421:5661..7087+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCGGGTGGGGGAGATCGAGAAGGAGAGGAAGAGGAGGAAATGGAGTT
CGTATTTCAAGAAGAGGTGGACGATGAGACAACGCTAGAAGCAGAGGGCG
CGGGTGGGGGAGATCGAGAAGGAGAGGAAGAGGAGGAAATGGAGTTCGTA
TTTCAAGAAGAGGTGGACGATGAGACAACGCTAGAAGCAGAGGACGCCCT
TGCGCAAGCCTCCGGAGGAAGCGCCGCCGCTGCCGCGGTGGACGCGGCCG
CTGAGCTCGCCGATCTAGCCGCGGAGGCTGAGCTTCCGCTTGAGGAGTTA
AGAAGGCGGGCCTACGGTGGCGGTGGCGGCGGTAGCGCCGGGGAAGGAGC
ACCAGATTTGCTGTCGGATGAAGAAGACTTCGATGAAAGCAACTTCAAAC
AGGAGGGAGCGTTTTCTTCTGACGGATTTTGGACGGAGGAAGACGCCCTT
GCGCAAGCCTCCGGAGGAAGCGCCGCCGCTGCCGCGGTGGACGCGGCCGC
TGAGCTCGCCGATCTAGCCGCGGAGGCTGAGCTTCCGCTTGAGGAGTTAA
GAAGGCGGGCCTACGGTGGCGGTGGCGGCGGTAGCGCCGGGGAAGGAGCA
CCAGATTTGCTGTCGGATGAAGAAGACTTCGATGAAAGCAACTTCAAACA
GGAGGGAGCGTTTTCTTCTGACGGATTTTGGACGGAGGAA
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