mRNA_H-paniculata_contig11077.696.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP) HSP 1 Score: 112 bits (281), Expect = 7.610e-27 Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 1 Query: 7 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 +++WAEAV ++VY LNR TR NG TPY W+G P +DHLR+F C Y +R KL KA G+ GY + GYR+YN K + V LSRNV+FDE Sbjct: 468 KKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYNLKTEKVILSRNVKFDE 567
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP) HSP 1 Score: 107 bits (266), Expect = 8.000e-25 Identity = 49/100 (49.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 7 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 +++WAEAV +AVY LNR PT+ TPY W G P + HL+VF C Y +R KL +KA GV GY + GYRIYNP V LSR+V+FDE Sbjct: 418 KKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFDE 517
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A1U8MHG7_GOSHI (uncharacterized protein LOC107937785 n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MHG7_GOSHI) HSP 1 Score: 106 bits (264), Expect = 1.520e-24 Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 1 Query: 1 MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 + Q+WAEAV ++VY LNR PTR TP+ WH P + HL+VF C Y + +++R KL +A G+ GY+ + GYR+Y+P K V +SR+V+FDE Sbjct: 700 LSSQFWAEAVNTSVYLLNRLPTRAIKDKTPFEAWHRVKPVVTHLKVFGCVCYALIPVEKRTKLKGRATPGIFVGYNSNKKGYRVYDPTAKKVLVSRDVKFDE 801
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A8J5ZME6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZME6_9ROSI) HSP 1 Score: 103 bits (258), Expect = 9.430e-24 Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1 Query: 13 YWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 +WAEAV ++VY LNR PT TP+ WHG P + HL+VF C Y +++R+KL ++A + GY GYR+YNP K + +SR+V+FDE Sbjct: 118 FWAEAVNTSVYLLNRLPTHAVKDKTPFEAWHGLKPTVSHLKVFGCVCYAHIPVEKRNKLEERAVPVIFVGYSSTKKGYRVYNPSTKGILVSRDVKFDE 215
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A8J5Y6F8_9ROSI (Integrase catalytic domain-containing protein n=4 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y6F8_9ROSI) HSP 1 Score: 103 bits (258), Expect = 9.660e-24 Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1 Query: 13 YWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 +WAEAV ++VY LNR PT TP+ WHG P + HL+VF C Y +++R+KL ++A + GY GYR+YNP K + +SR+V+FDE Sbjct: 642 FWAEAVNTSVYLLNRLPTHAVKDKTPFEAWHGLKPTVSHLKVFGCVCYAHIPVEKRNKLEERAVPVIFVGYSSTKKGYRVYNPSTKGILVSRDVKFDE 739
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA) HSP 1 Score: 99.4 bits (246), Expect = 1.540e-23 Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 7 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 +++WAEAV +AVY LNR PT+ TP W G+ P +DH R+F C Y Q+RHKL +K G+ GY GY +N K + + SR+V+FDE Sbjct: 116 KKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDE 215
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: UPI00064D8DA3 (uncharacterized protein LOC105973146 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064D8DA3) HSP 1 Score: 103 bits (256), Expect = 1.580e-23 Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 1 MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 M ++WAEAV AVY NR+PT+ TP W G+ P + HLRVF AYG Q+R KL D++ V GYD + GY++YNP N + +SR+V FDE Sbjct: 350 MPNEFWAEAVACAVYLANRSPTKDVENQTPLEAWSGKKPSVHHLRVFGSIAYGHVPAQERSKLDDRSAKYVFIGYDLNSKGYKLYNPANGKIVVSRDVEFDE 451
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A8J6CZM8_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CZM8_9ROSI) HSP 1 Score: 103 bits (256), Expect = 1.730e-23 Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1 Query: 10 QYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 ++WAEAV ++VY LN+ PTR N TP+ W+G P + HL+VF C Y + ++R KL ++ G+ GY GYR+Y+P K + +SR+++FDE Sbjct: 14 KFWAEAVNTSVYLLNKLPTRAVNDKTPFEAWYGLKPSVSHLKVFGCMCYALIPAERRTKLERRSAPGIFVGYSSTKKGYRVYDPSTKKILVSRDIKFDE 112
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 103 bits (256), Expect = 1.800e-23 Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 1 Query: 1 MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 +G+++WAEA+ +A Y +NR+P+R TPY WHGE P L HLRVF C+A+ Q+R KL K+ + GY ED GYR+ +P K V SR+V F E Sbjct: 578 LGKEFWAEAIVTACYLINRSPSRALGERTPYEVWHGEKPDLSHLRVFGCSAWAHIPKQRRKKLDPKSERLIFIGYPEDRRGYRLLDPVTKRVTNSRDVHFVE 679
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY) HSP 1 Score: 102 bits (255), Expect = 2.470e-23 Identity = 47/100 (47.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 7 RQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTAYGMFQLQQRHKLGDKAWAGVLWGYDEDFPGYRIYNPKNKSVQLSRNVRFDE 306 R +WAEAVR AVY LNR PT+ TP W G+ P + HL++F C AY Q R KL D+ + GYDE YR+YNP K + +SR+V FDE Sbjct: 469 RNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDE 568 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11077.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11077.696.1 >prot_H-paniculata_contig11077.696.1 ID=prot_H-paniculata_contig11077.696.1|Name=mRNA_H-paniculata_contig11077.696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp MGRQYWAEAVRSAVYCLNRAPTRPHNGGTPYGKWHGETPKLDHLRVFDCTback to top mRNA from alignment at H-paniculata_contig11077:4303..4608+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11077.696.1 ID=mRNA_H-paniculata_contig11077.696.1|Name=mRNA_H-paniculata_contig11077.696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig11077:4303..4608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11077:4303..4608+ >mRNA_H-paniculata_contig11077.696.1 ID=mRNA_H-paniculata_contig11077.696.1|Name=mRNA_H-paniculata_contig11077.696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig11077:4303..4608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |