prot_H-paniculata_contig10889.573.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig10889.573.1
Unique Nameprot_H-paniculata_contig10889.573.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length246
Homology
BLAST of mRNA_H-paniculata_contig10889.573.1 vs. uniprot
Match: A0A6H5K6C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C3_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.030e-56
Identity = 106/180 (58.89%), Postives = 121/180 (67.22%), Query Frame = 0
Query:   17 FLAEGGTDAELVGIFRTSMAPADHNGGPGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARCKVQAIFNEVGVVLKNAQLANINKMRSTLRDLERWEALYRHRPKHSIKDGPKAWWIFLVKCVSRPGKAAQRAKLGWLDVVRLLRLRKMYVQLYMARARHQATPEEYQQFTRRD 196
            FLA G TD +L  +FRTS+A                                             ++ K+QA FN+VG+VL N+Q+ANINKMRSTLRDLERWEALYRHRPKH IKDGPKAWW++LVKCVSRPGKA +RAKLGW DVVRLL LRK+YV+LY ARARHQATPEEYQQFTR D
Sbjct:  320 FLASGLTDEDLESMFRTSLAEGGDR----------HSYVVIPASPVFRLRVQRDGGGDSGSMGGSSKYKIQAFFNDVGLVLNNSQIANINKMRSTLRDLERWEALYRHRPKHKIKDGPKAWWVYLVKCVSRPGKAEKRAKLGWPDVVRLLSLRKLYVRLYTARARHQATPEEYQQFTRLD 489          
BLAST of mRNA_H-paniculata_contig10889.573.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 2.090e-55
Identity = 106/180 (58.89%), Postives = 119/180 (66.11%), Query Frame = 0
Query:   17 FLAEGGTDAELVGIFRTSMAPADHNGGPGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARCKVQAIFNEVGVVLKNAQLANINKMRSTLRDLERWEALYRHRPKHSIKDGPKAWWIFLVKCVSRPGKAAQRAKLGWLDVVRLLRLRKMYVQLYMARARHQATPEEYQQFTRRD 196
            FLA G T  +L  +FRTS+A          G                                  ++ K+QA FNEVG+VL N+Q+ANINKMRSTLRDLERWEALYRHRPKH IKDGPKAWW++LVKCVSRPGKA +RAKLGW DV RLL LRK+YV LY ARARHQATPEEYQQFTR D
Sbjct:  351 FLASGLTGEDLESMFRTSLA----------GGEDRHSYVVIPASPDFRLRVQREGGGDGGGVGGSSKYKIQAFFNEVGLVLNNSQIANINKMRSTLRDLERWEALYRHRPKHKIKDGPKAWWVYLVKCVSRPGKAEKRAKLGWPDVARLLSLRKLYVHLYTARARHQATPEEYQQFTRLD 520          
BLAST of mRNA_H-paniculata_contig10889.573.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.450e-8
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 0
Query:   82 ARCKVQAIFNEVGVVLKNAQLANINKMRSTLRDLERWEALYRH----------------RPKHSIKD-GPKAWWIFLVKCVSRPGKAAQRAKLGWLDVVRLLRLRKMYVQLYMARARHQATPEEYQQ 191
            A+ +V    + +G+V+  AQL ++ +MR+TL + ERW A+Y+H                   H+  D  P+AWW             A+   L    V RLL  RK YV+LYMARA+H+ TP++YQ+
Sbjct:  378 AKLEVALRCSGMGIVVSRAQLEDLCQMRATLSEAERWGAVYQHVXXXXXXXXXXXXXXXXVPHARPDRDPRAWWR---------DSCARWRYLAKTFVARLLAQRKRYVELYMARAQHRETPDDYQE 495          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10889.573.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K6C3_9PHAE1.030e-5658.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMF5_ECTSI2.090e-5558.89FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836C849_9STRA2.450e-834.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031646Vacuolar protein sorting-associated protein 13, second N-terminal domainPFAMPF16908VPS13coord: 27..177
e-value: 7.8E-32
score: 111.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10889contigH-paniculata_contig10889:777..5193 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10889.573.1mRNA_H-paniculata_contig10889.573.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig10889 777..5194 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig10889.573.1 ID=prot_H-paniculata_contig10889.573.1|Name=mRNA_H-paniculata_contig10889.573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
CDDVQQTDQSPSLPSCFLAEGGTDAELVGIFRTSMAPADHNGGPGQGRGA
LGKGQHEYVVMPVSPSFRLRVQKGDGDGGGGARCKVQAIFNEVGVVLKNA
QLANINKMRSTLRDLERWEALYRHRPKHSIKDGPKAWWIFLVKCVSRPGK
AAQRAKLGWLDVVRLLRLRKMYVQLYMARARHQATPEEYQQFTRRDRGVS
TEGHRRARRGGGATVARAPESGITSRSTPTTSRATNLGAVATASRP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031646VPS13_N2