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Homology
BLAST of mRNA_H-paniculata_contig10889.573.1 vs. uniprot
Match: A0A6H5K6C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C3_9PHAE) HSP 1 Score: 203 bits (517), Expect = 1.030e-56 Identity = 106/180 (58.89%), Postives = 121/180 (67.22%), Query Frame = 1
Query: 49 FLAEGGTDAELVGIFRTSMAPADHNGGPGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARCKVQAIFNEVGVVLKNAQLANINKMRSTLRDLERWEALYRHRPKHSIKDGPKAWWIFLVKCVSRPGKAAQRAKLGWLDVVRLLRLRKMYVQLYMARARHQATPEEYQQFTRRD 588
FLA G TD +L +FRTS+A ++ K+QA FN+VG+VL N+Q+ANINKMRSTLRDLERWEALYRHRPKH IKDGPKAWW++LVKCVSRPGKA +RAKLGW DVVRLL LRK+YV+LY ARARHQATPEEYQQFTR D
Sbjct: 320 FLASGLTDEDLESMFRTSLAEGGDR----------HSYVVIPASPVFRLRVQRDGGGDSGSMGGSSKYKIQAFFNDVGLVLNNSQIANINKMRSTLRDLERWEALYRHRPKHKIKDGPKAWWVYLVKCVSRPGKAEKRAKLGWPDVVRLLSLRKLYVRLYTARARHQATPEEYQQFTRLD 489
BLAST of mRNA_H-paniculata_contig10889.573.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 201 bits (511), Expect = 2.090e-55 Identity = 106/180 (58.89%), Postives = 119/180 (66.11%), Query Frame = 1
Query: 49 FLAEGGTDAELVGIFRTSMAPADHNGGPGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARCKVQAIFNEVGVVLKNAQLANINKMRSTLRDLERWEALYRHRPKHSIKDGPKAWWIFLVKCVSRPGKAAQRAKLGWLDVVRLLRLRKMYVQLYMARARHQATPEEYQQFTRRD 588
FLA G T +L +FRTS+A G ++ K+QA FNEVG+VL N+Q+ANINKMRSTLRDLERWEALYRHRPKH IKDGPKAWW++LVKCVSRPGKA +RAKLGW DV RLL LRK+YV LY ARARHQATPEEYQQFTR D
Sbjct: 351 FLASGLTGEDLESMFRTSLA----------GGEDRHSYVVIPASPDFRLRVQREGGGDGGGVGGSSKYKIQAFFNEVGLVLNNSQIANINKMRSTLRDLERWEALYRHRPKHKIKDGPKAWWVYLVKCVSRPGKAEKRAKLGWPDVARLLSLRKLYVHLYTARARHQATPEEYQQFTRLD 520
BLAST of mRNA_H-paniculata_contig10889.573.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.450e-8 Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 1
Query: 244 ARCKVQAIFNEVGVVLKNAQLANINKMRSTLRDLERWEALYRH----------------RPKHSIKD-GPKAWWIFLVKCVSRPGKAAQRAKLGWLDVVRLLRLRKMYVQLYMARARHQATPEEYQQ 573
A+ +V + +G+V+ AQL ++ +MR+TL + ERW A+Y+H H+ D P+AWW A+ L V RLL RK YV+LYMARA+H+ TP++YQ+
Sbjct: 378 AKLEVALRCSGMGIVVSRAQLEDLCQMRATLSEAERWGAVYQHVXXXXXXXXXXXXXXXXVPHARPDRDPRAWWR---------DSCARWRYLAKTFVARLLAQRKRYVELYMARAQHRETPDDYQE 495
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 201.4 |
Seed ortholog evalue | 4.7e-49 |
Seed eggNOG ortholog | 2880.D7FMF5 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization |
EggNOG OGs | COG5043@1,KOG1809@2759 |
COG Functional cat. | U |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 6 |
Model size | 740 |
Cds size | 738 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10889.573.1 >prot_H-paniculata_contig10889.573.1 ID=prot_H-paniculata_contig10889.573.1|Name=mRNA_H-paniculata_contig10889.573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
CDDVQQTDQSPSLPSCFLAEGGTDAELVGIFRTSMAPADHNGGPGQGRGA LGKGQHEYVVMPVSPSFRLRVQKGDGDGGGGARCKVQAIFNEVGVVLKNA QLANINKMRSTLRDLERWEALYRHRPKHSIKDGPKAWWIFLVKCVSRPGK AAQRAKLGWLDVVRLLRLRKMYVQLYMARARHQATPEEYQQFTRRDRGVS TEGHRRARRGGGATVARAPESGITSRSTPTTSRATNLGAVATASRP back to topmRNA from alignment at H-paniculata_contig10889:777..5194+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10889.573.1 ID=mRNA_H-paniculata_contig10889.573.1|Name=mRNA_H-paniculata_contig10889.573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4418bp|location=Sequence derived from alignment at H-paniculata_contig10889:777..5194+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TGCGACGACGTCCAGCAGACCGACCAGTCGCCGTCGCTGCCGTCATGCTT
TCTCGCCGAGGGAGGCACGGATGCCGAACTGGTCGGCATATTCCGCACCT
CGATGGCACCCGCGGATCACAATGGCGGACCGGGTCAGGGCCGGGGGGCG
CTTGGCAAAGGGCAGCATGAGTACGTCGTCATGCCAGTGTCGCCATCGTT
CCGTCTCAGGGTACAGAAGGGGGATGGAGATGGAGGTGGTGGCGCGCGGT
GCAAGGTCCAGGCTATTTTCAACGAGGTAGGGGGGGATCGCGGGTCGGAG
AGATAGATCTTGGTGTGTTTTGATATTAACAAAAAAAGGGAGAAACTTAA
GCGTTTGTGCTGTTGTTCGTGGTTCTGTTGAGGAATTGGTTGTGTCTTGC
TCCTTTGACGTGGTGCCGTGGTGCTGTGCTCAATTGGACGTATTGTCATG
ATCCATTTGAGACATATCGACATCCCGCATTGAAGATGTACCGCCATGCT
CAACTGAAGATGTACTATCATGCTCAACTAAAGATGTATTGCCATGCTCC
ATTAAAGAGATGTTGCAATACTCCGTCGAAGAGGTATTGGCATACTCCAA
TGGAGACGTATTACCATGGTCTATCGAAGAAACATCAAATTGAGAACGTA
CTGTACTTCCCCGGCTTCCATTGAAGAGCATTGTCTACCTTGCATTGAGT
TTAGTTATCTATTTTTTTACACTGATCATCCATGACACTGCGGAGGTTAT
ACTTTTAGAAATGCCCCCGTATTGCCCCGCTGTCCCGCCGTCGCCGTTAT
TCGTTCCATTACGTGCGTAGGTCGGAGTGGTTTTGAAGAACGCGCAACTA
GCAAACATCAACAAGATGAGGTATGGTGGGATGACTGGATGCGCGCAGGG
GACGCATTGGTTGCTGCAGAAAACGTCAGAATAGTCGTAAAACAAGTTGC
TGAATTACTTATCCACGAAGTGAACAAACTTGAGGGGGGAGGGGGGGAGA
TATCTACCTGAAGCACGTGTAAAGTAGGAGAAATTATGCATCGAATGTTT
CGAACTAGCCTAACGAAAAGGATTCTTAACCCTTTCACGCTCCAGGTGAA
GTTTCAGAACGAAAGTGGTATATGATGATTACTGTCGAGCTCTGCATGTA
GTCATTGTGGGCAAATCATGCCAAGTTCCTCTTATGAATGGACTGTCCAT
CTGAACAGCAGCGGCTGGGCTCTCTCTATCTCCGAAATCATGTCATACCC
TATCGTTTTCCCCCGTCTTTTAAGAACACCCTTCTACTGTAGTGTGTCGT
TTTCTCTGTGTTCGAAGGGATGAAGAGGGAAAAATTGTTCACGGATTGCT
GTGTTTGCGAAAAACAATCAGTTTCTGGTTCCACTTTGCTCTTGCACCAG
TTGGCAGTCATTGGTTAGTTGATTTGAATTATTGTCTGTGTATGGGTTGT
GAACGAGCCTCATAGTTTTCTCCAACTTCGGCCATCTGCGCAAGGTTTAT
ATCTACAAAACAATATTCGGGTAAATGTGCTCAGGATTCCAAAATTTGAA
TCGAATGTTGGATTGTGGCTAGACTTTGTGCAGATGGCTGAGGGAAGCTG
TGAAGCTCGTTCACAGTCCATGAGTGCACAGACGATAATTCAAATGGACC
AACTAGTGACTACCTACTAGTGCAGGAGCAAAGCGAAATTCAAAAGCCCA
TTTTGGTTCTCGCAAACATTCTAGATTAACGTCCACCCACTTCGAAGGGT
CTTCCATCCCGCAAACTGTTTGCGATATTCCCCTATTTGATTGTAAAGTT
TAGTAGTGCAGGGATGATCTCTGGTGAAGGTCATAGCTCCTGTCGTGCCT
AGTCGAAGAGGTGCGGAAAGTACTCTACGAGATCTCACTCCCCCCGTTCC
CACTCCTGGTTGGATGGCTGTTTAGATCTACCCTTCGGGACCTGGAGAGG
TGGGAGGCGCTGTACAGGCATCGTCCCAAGCACAGCATTAAGGACGGTCC
GAAGGCTTGGTGGATCTTCCTTGTCAAATGTGTCTCAAGGTGAGGAGAAT
TGACAGCCGATTTTTCTGGTTATGGTCATTTTTTTATTGTGTCCACGGTT
CGGGCCAATTAATATCAATACAACGCGTACGAGTCGTGGCTGGCACCGTT
CAGCCGCGTGGTTCGAAATATTTTAATTATTTCACTTTCCGGACGAGTGC
TGGTAATTCGATTGGATTTGGCGATAATTTTTAACAGTATCCATCTGAAG
CTTCGGTATGAAGACGTTTATTCTACTCCCTCTGTATCACGAGTATGTGT
GCTTATGGTTGAATTGTCTTACCCTTTTCAAATTTGGGCTTCATTAAAAG
CAGAGGATATAATTCAAAGGTCCACGACCTCGGTTTGCACATGAACATCG
ACAAAGCATAAATTGACTTGCGAAATGGTTGAGAAACCGCACTCTCGACT
TCCTGTTTTTTATTCTGGAAATGCGTTTGCTTGCCGCAAAAGCTACATAG
GCCAAAACAGCGGGGAACGATGGTTGATCGACGATAGCGTCTCAACAAGA
CCTCCAATGAAGAAGCAGATTTTGCTGCGTTAGATTCGTTGACAAAACTT
GGACACAATTCAATAATTATGTCTTTCTCATCAATCCCAAATTTTGTCGT
CCGCGCCACGGCATTGAGGCGGGGCACACGAGATACAGCGAAGGTTCAGG
TTTTGGTTGCTCGTGACAAACTAATTAACACGTGTTTCATGCGACCCTCA
AGTGATGATGTGACGTGAGGAGGTGATACGTAGCTCTGTAGTATTTATTG
ACTTTAGCCTAACTTTAGTCAAGGAATCTAACGCAGCAATTTGCTTCTTC
ATCGGAGGTCTCGTTGAGACGTTATCGTCGATCAACGATCGCTTCCCGTT
GTCTTGGCTGATGTAGCTTTTGTTGCAAGCAAACGCATTTCGGGAAAAAA
ACCCCGGGAAGTCGAGAGTGCGGTTTCTCAATCATTTCGCAAGTCAATTT
ATGCTTGGTAAATGTTCACGTGCAAAGCGAGGTCGTGGACTTCCGAATTA
TATCCTCTGCTTTTAATGAAGCCAAAATTAGGAAAAGGTGTGCCTTTTTA
CCATGCAAGAATGCGGCGAATATTGATGAAACGAATGAATAGGAGTAGAT
GCTTAATTGTATGTGCCTACACGTGATGAAACTGGGACCAACGCTTGTAA
AATGTTGTTTAGACCATGCGAAGTATTAGTTTTCGCTAAGGGGGGGTGAA
AACATGTGCTAGCGATCCATAGGCGCACCGATCAGAGGTAGAAAACCGTG
CACGGACCGAAAAGGGTGTACCTGTATTGATTACGGGATCGGTCCATTCC
GTAAAATGTGCGGAAAATGATGGTGAGGGGCCGCTGAAGTCGTGAAACGA
GAATCTCCGTTGTGATAAGTAATGAAGTTTTAATGTCTCTGGCTCAGTGT
AAAATCAAGGGAGCATAGATACCTTCCCGTAACCCCTGAAATTTAGTTTC
GATCAAGAATCAAGGTCACTCATTGCTTTGGTGCAAGAATGGCGTTAGGT
TTCGCACCAGACACAGTGCACATAAATTTGTGTGTATATATGTTCATTGG
TGCATGCATACCGCTTTCTTTCAGGCCGGGTAAAGCTGCACAACGCGCGA
AGCTAGGTTGGCTTGACGTTGTGCGACTGCTGAGGTTGCGGAAGATGTAC
GTACAGCTTTACATGGCTAGGGCCAGGCATCAGGTACAGTCTCCACCTTC
GATACTGTACTGCTCTTCGCAATTTGCTCGCCGTCCCCTTTTTATGTACA
AATGGTCCGTAGGTACCCTTTGCTGGGGTCACGATATGGACGAAACGTTG
TATACGAGCAAGATGAAGACTATGAAAATGAAGTAGCTATTGTTTGGTGT
TTCGTTGAAGGCGGACGACAAACAAACCATGTCTTTTCGTATATATGTAG
GGCTCTATGTATATATAGAGATACTATTTTTTCTCTCCTAATTTTGCTCT
TTGCTTCATGTGAGTAAGTTCTCTTAGTCAGTGATGCAATTATTGCGAGA
GTGCATCCTGTGCATCGGCAGCAGCACCTTCAGAATAAACAAACTTTACA
GACTAAATAGACTAAAAAAACGTACCGGGCAGAATCCGACAGTGAAGTAG
TGGGGTGTTTTGAGTAACAGCACATACTGACACACCCAGGAATATGCGTA
TACAGGCTACGCCGGAGGAATATCAGCAGTTCACTCGCCTCGACGAGCAG
CTGACGGCTAACGAGATCGTGGCGTTTCGACTGAAGGCCATCGCCGAGCT
CGAAGAGGAGGAGGCGCTACAGTTGCAAGAGCTCCAGAGTCTGGCATCAC
TTCCAGATCCACACCAACAACATCGCGGGCGACGAACTTGGGGGCAGTGG
CTACTGCGTCGAGACCCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig10889:777..5194+ >mRNA_H-paniculata_contig10889.573.1 ID=mRNA_H-paniculata_contig10889.573.1|Name=mRNA_H-paniculata_contig10889.573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig10889:777..5194+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TGCGACGACGTCCAGCAGACCGACCAGTCGCCGTCGCTGCCGTCATGCTT TCTCGCCGAGGGAGGCACGGATGCCGAACTGGTCGGCATATTCCGCACCT CGATGGCACCCGCGGATCACAATGGCGGACCGGGTCAGGGCCGGGGGGCG CTTGGCAAAGGGCAGCATGAGTACGTCGTCATGCCAGTGTCGCCATCGTT CCGTCTCAGGGTACAGAAGGGGGATGGAGATGGAGGTGGTGGCGCGCGGT GCAAGGTCCAGGCTATTTTCAACGAGTGCGACGACGTCCAGCAGACCGAC CAGTCGCCGTCGCTGCCGTCATGCTTTCTCGCCGAGGGAGGCACGGATGC CGAACTGGTCGGCATATTCCGCACCTCGATGGCACCCGCGGATCACAATG GCGGACCGGGTCAGGGCCGGGGGGCGCTTGGCAAAGGGCAGCATGAGTAC GTCGTCATGCCAGTGTCGCCATCGTTCCGTCTCAGGGTACAGAAGGGGGA TGGAGATGGAGGTGGTGGCGCGCGGTGCAAGGTCCAGGCTATTTTCAACG AGGTCGGAGTGGTTTTGAAGAACGCGCAACTAGCAAACATCAACAAGATG AGGTCGGAGTGGTTTTGAAGAACGCGCAACTAGCAAACATCAACAAGATG AGATCTACCCTTCGGGACCTGGAGAGGTGGGAGGCGCTGTACAGGCATCG TCCCAAGCACAGCATTAAGGACGGTCCGAAGGCTTGGTGGATCTTCCTTG TCAAATGTGTCTCAAGATCTACCCTTCGGGACCTGGAGAGGTGGGAGGCG CTGTACAGGCATCGTCCCAAGCACAGCATTAAGGACGGTCCGAAGGCTTG GTGGATCTTCCTTGTCAAATGTGTCTCAAGGCCGGGTAAAGCTGCACAAC GCGCGAAGCTAGGTTGGCTTGACGTTGTGCGACTGCTGAGGTTGCGGAAG ATGTACGTACAGCTTTACATGGCTAGGGCCAGGCATCAGGCCGGGTAAAG CTGCACAACGCGCGAAGCTAGGTTGGCTTGACGTTGTGCGACTGCTGAGG TTGCGGAAGATGTACGTACAGCTTTACATGGCTAGGGCCAGGCATCAGGC TACGCCGGAGGAATATCAGCAGTTCACTCGCGCTACGCCGGAGGAATATC AGCAGTTCACTCGCCGAGATCGTGGCGTTTCGACTGAAGGCCATCGCCGA GCTCGAAGAGGAGGAGGCGCTACAGTTGCAAGAGCTCCAGAGTCTGGCAT CACTTCCAGATCCACACCAACAACATCGCGGGCGACGAACTTGGGGGCAG TGGCTACTGCGTCGAGACCCCGAGATCGTGGCGTTTCGACTGAAGGCCAT CGCCGAGCTCGAAGAGGAGGAGGCGCTACAGTTGCAAGAGCTCCAGAGTC TGGCATCACTTCCAGATCCACACCAACAACATCGCGGGCGACGAACTTGG GGGCAGTGGCTACTGCGTCGAGACCC back to top
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