prot_H-paniculata_contig10875.563.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig10875.563.1
Unique Nameprot_H-paniculata_contig10875.563.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length508
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10875.563.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 124..147
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 282..463
coord: 171..271
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 116..254
e-value: 2.4E-25
score: 90.9
coord: 255..354
e-value: 1.0E-18
score: 69.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 355..506
e-value: 9.2E-31
score: 109.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 205..255
e-value: 4.5E-12
score: 46.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 284..312
e-value: 0.014
score: 15.6
coord: 324..348
e-value: 9.4E-5
score: 22.4
coord: 175..203
e-value: 0.044
score: 14.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 376..441
e-value: 3.6E-9
score: 36.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 357..388
e-value: 4.2E-5
score: 21.4
coord: 324..348
e-value: 8.7E-5
score: 20.5
coord: 208..237
e-value: 2.8E-9
score: 34.6
coord: 174..207
e-value: 8.8E-4
score: 17.3
coord: 393..423
e-value: 7.6E-5
score: 20.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 280..314
score: 8.342
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 243..277
score: 7.311
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 317..351
score: 9.821
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 354..388
score: 9.876
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 428..462
score: 9.613
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 171..205
score: 10.084
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 206..240
score: 12.299
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 466..500
score: 5.952
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 391..425
score: 10.216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10875contigH-paniculata_contig10875:4448..6239 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10875.563.1mRNA_H-paniculata_contig10875.563.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig10875 1979..6973 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig10875.563.1 ID=prot_H-paniculata_contig10875.563.1|Name=mRNA_H-paniculata_contig10875.563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=508bp
MTSRYVASAIVNGPTRAAGRRSFPPAKLPSTLGQQAGFLSRLCGVLMPKT
IDHRDENATFKSIHMAPGLSAGGMTWKAPPGTRLLSTSPMSSTTAGQSAP
STEKSDSGLSTGLASSSDVAGARRENADSMAEAHKQLMRKLQRAKDRGNW
QHSKVLLRSYLKHEATKDIVDVKVFTYAMGACAKAGAWKEALEIMHLMNV
NGVQPNTITYNTLINAYRKDGQWEKAMEVLKEMKALGGIIAPNEASYGLT
IKACGKGGQGDLAAALLKELRAGDSPVSAELDHFNSTIYALGNSNHWRKA
VDLLQEMRTENVPVVPDTYSFVHAITACGKAGQGEEALRIFQEMRAAGDS
VVQGPFAYSAAISACGKSGDAKAALSLLRDMEADGVTVSPNVFTYNAAIT
ACGDAGRGDQAVGVLKEMEVEGSSVRPNIACYNSAILACGKCGQWEQAMF
IFRETLKNDISVKRTRASTYLAAIQACRHSYQESQVAALEKEMKENGIAF
NATRLST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat