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Homology
BLAST of mRNA_H-paniculata_contig10875.563.1 vs. uniprot
Match: UPI001CB94CAF (pentatricopeptide repeat-containing protein At2g18940, chloroplastic n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94CAF) HSP 1 Score: 59.7 bits (143), Expect = 2.260e-5 Identity = 29/88 (32.95%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 634 QHSKVLLRSYLKHEATKDIVDVKVFTYAMGACAKAGAWKEALEIMHLMNVNGVQPNTITYNTLINAYRKDG-QWEKAMEVLKEMKALG 894
QHS V+ R + + + + ++DV+ T + + + +G +++A+++ M G+ PN +TYN +++ YRK G W+K + +LKEMK G
Sbjct: 216 QHS-VMSRLFDEFDVVQRLIDVRAITTILHSYSCSGKYQKAIDLFDRMKAVGLSPNLVTYNVMLDVYRKRGCSWDKILILLKEMKTEG 302
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | mitochondrion |
Exons | 4 |
Model size | 2441 |
Cds size | 1524 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10875.563.1 >prot_H-paniculata_contig10875.563.1 ID=prot_H-paniculata_contig10875.563.1|Name=mRNA_H-paniculata_contig10875.563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=508bp
MTSRYVASAIVNGPTRAAGRRSFPPAKLPSTLGQQAGFLSRLCGVLMPKT IDHRDENATFKSIHMAPGLSAGGMTWKAPPGTRLLSTSPMSSTTAGQSAP STEKSDSGLSTGLASSSDVAGARRENADSMAEAHKQLMRKLQRAKDRGNW QHSKVLLRSYLKHEATKDIVDVKVFTYAMGACAKAGAWKEALEIMHLMNV NGVQPNTITYNTLINAYRKDGQWEKAMEVLKEMKALGGIIAPNEASYGLT IKACGKGGQGDLAAALLKELRAGDSPVSAELDHFNSTIYALGNSNHWRKA VDLLQEMRTENVPVVPDTYSFVHAITACGKAGQGEEALRIFQEMRAAGDS VVQGPFAYSAAISACGKSGDAKAALSLLRDMEADGVTVSPNVFTYNAAIT ACGDAGRGDQAVGVLKEMEVEGSSVRPNIACYNSAILACGKCGQWEQAMF IFRETLKNDISVKRTRASTYLAAIQACRHSYQESQVAALEKEMKENGIAF NATRLST* back to topmRNA from alignment at H-paniculata_contig10875:1979..6973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10875.563.1 ID=mRNA_H-paniculata_contig10875.563.1|Name=mRNA_H-paniculata_contig10875.563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4995bp|location=Sequence derived from alignment at H-paniculata_contig10875:1979..6973+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGGTACCTACAGCCGGTATTGGAGTTGAACTATAATCAAGGTACGGTAAC
GGTACCGACTGTCTGGCTGTACCGCAGTAATGGTAAATCTCAACATTTTA
CGGTGCTATATCGAATACCGAACCAGGTGCCTGCGGTTTTACCGCGGTAT
TCTCACCACTATAATATTACCGAGACTATCCATGAACAAAAGCTGGATGT
AACCGCACTTGGGTGTGCTCTCACATGGGATGGATTTGGGCATTACCACC
CCCCATATCAGCGAAAAACATATTTACTCAAGTACGAGGCCTCTCGATTT
CAACTCCACGTTAGAACAGTGCAGATATGGGAAACGAAAAGGTGGTCTCC
TTGAGGACCTCGGCATTGCGCAATCCTTTGGAACCTCTATTTGTGAATGC
AGTCAATATCAATCGGGTCTCGTGTTTGACTGCAAGATAGACGTCTACAG
CAGACCACGGATAGTTTGTAAGCACAGACACGGCGATGCCCGTAGATGTC
TGTGACTGTACCAGAAAGAGAAGCTGTGCAAAATGGGCACCTCAGACCGC
GGTGCGTTCAACTGTGCAGCACAGCAAAATAATAACAGTTCGATGTGTTG
TTCAGGCCTGTCAATACCCTGAGCAAACAGTGCACCCGGAGTTCCCCAAA
TATAGCATGTAATCACGTGCGCAGAGGCAAGGGGTCTCACTCGACTGTGA
TCACTACAAATAACAACATAGGGCATACTCACTGAGATCACAATTGGGGC
CACCCACAGTTCCAAGTAGCGCCTGGATCCATGCACAAGATACCGCCTCT
TTCCCCGTTAGCTGCTTTTTAGGAGGTGGTGGCGACACGCACGCGGTCAA
ACCCCCCTTCGATTTACGTTCGTTATTTTCTGAATCATCACCGGCGCCAT
AGGTTATTTTTCAATAATACGCTTTAGGTGCTAAATTTTGCGGCAACAGC
ATCCACGCGGGTTATGGTCTCCCACCATTCTCTATAAATCTCATTCTTCT
AAGATGCCTCACTGTACCACATGGGTGTAATGTCCGTGTTGCTCAAATTG
CATTCGTATTCGAATTTCCTGTGACCGCGGACCGTCAAGACTATGTAGGC
GAATATGGAACATAAACTTCGACCAAGGACCGTCGAAAATGTCTGACTGC
CGAGAGGTGGACAAGAAGGACCAGAGTCACTGGACGCGTGAGTGGCGAAT
AGCAAGGTGAACGTGTGTTAGTTGTTGAATTTCCTGATGCTGATTATTCT
CCATGGTGTTGAGGCTGAAGCGTGTTAGACGAGGATGGTGTCCTGTCTTG
TGAGGTCCACATATGTCTGCTTCTGTCATGCTGTAGTCCTCCATATTGCA
GTTACACTATGCCGTCTGAGAGAGCTCTACTTTGTGCATCTGCTGCTGCT
ACTGCTGCTGATGATCATGATATTGATGGTTGGTTGTGGTGCAATCTAAA
AGAGGAGAAGGCCCACTGGTTGAATGGAAGCTCGGTCGCAAGAATTGAGT
TGCGTAGGGAGTCACGATTAAGACAGAGAATATCGTTATTGTAGAGAACC
GAGTCCCTTGAAAAGCAGTTATTCGACAAAGTGGGTCACAATCGCGGCTT
CGTCGACACTGTTGAGCTTCACTGGAGACACTCTTTGCTCTTTTACCATG
ACTAAGATAGACGCCCCCAAATAGATATGTTGTTACGTAGACCCTCTTCC
TAGGGTCAGTGGATCAAATCTATGCATGACCCGGATATGAATGTCGGAAA
TTCAGCAAGTTGTACGATACATGTACTGTCTGCTGTCTAGATCTATGTTC
AATCCATGCATCTCCATGATAAAGATGGCATACGAGGATTTGCCAGTATA
TGTACTGCAATGCATTGATCAAGCACAGCTCTGACAGCTGTTTGTACAAC
ACTCAGTACAGTCAAGTAACCTGCTGCCGGATACGAAACATCAGTATTCA
GTTGTGAGGGTCGAACATAGACCGTACCCATGGCCGGCCGGAACTTCAGT
ATTGCGAATGCATCCCTTTGGACCCAAAAAATCAACGAAAATAATCAAGC
GCAGATATCGATAAACTTCAGTGTTAAATTGCCTTCTTTTTTTGAACGCG
TTGGTTGTGAACTTGGCGGTGTTCTTCGCGTTTCCTCCTACGCAGTAAAC
GGCGCAGTGCAGTTGGACTACAGTGCAGCAGAGCTAGCCTATATCAACCA
CAACACTGAATAGATCGCCACGATAAGGTCTTGAAAACAGCATCTAAGCT
ATATCATCTCACCGATAGTCGCTGCCAAATTTATTCATACCGTTGATTTT
TTTCGCTTCGTCGCCTCGGACTGACTCAACACATGCGGAATGAATTCGGG
GTAAACTCGCACTCTCTGCCGCTTCTCACGCCCCCTCGCAAACCCCTTTT
GTCCCTGCGTCTCACTCGAACTGTTCAACACCAACACCAATAGAGAAACG
AGCGAGCGGTCTTGCAGCAATGACTTCCCGTTATGTCGCCAGTGCTATTG
TAAATGGGCCAACCCGAGCAGCCGGTAGGCGTTCCTTCCCCCCCGCAAAG
CTCCCCAGCACACTCGGGCAGCAGGCAGGATTCCTATCCCGGTTATGTGG
TGTGCTTATGCCGAAGACGATAGACCATCGCGACGAAAACGCCACCTTCA
AAAGCATTCATATGGCGCCTGGGCTGTCCGCAGGTGGAATGACGTGGAAG
GCTCCGCCGGGGACACGCCTGCTGTCCACTTCGCCGATGTCGAGCACGAC
GGCGGGTCAGTCGGCGCCATCGACCGAGAAATCGGACTCCGGCCTGAGCA
CGGGCCTGGCCAGCTCAAGTGATGTAGCGGGGGCACGCCGTGAAAATGCA
GATAGTATGGCTGAGGCACATAAACAGTTGATGAGAAAATTGCAGCGAGC
GAAAGATCGAGGGAATTGGCAACACTCTAAAGTGTTGCTGAGGTCGTATC
TCAAGCACGAAGCGACGAAGGATATCGTTGATGTGAAAGTCTTCACATAT
GCGATGGGTGCCTGCGCGAAGGCTGGGGCATGGAAAGAGGCGTTGGAAAT
AATGCATCTCATGAACGTCAATGGGGTACAGCCGAACACGATCACGTACA
ACACTCTCATAAACGCATACAGAAAGGATGGACAGTGGGAGAAGGCCATG
GAGGTACTGAAAGAGATGAAGGCTCTTGGAGGTATCATCGCGCCTAACGA
AGCCTCGTATGGATTGACCATCAAAGCGTGCGGTAAGGGCGGTCAGGGGG
ATCTGGCTGCGGCATTGCTAAAGGAGCTGAGGGCGGGGGATAGCCCCGTC
TCTGCCGAACTTGACCACTTCAATTCGACAATCTACGCGCTGGGCAATAG
TAACCATTGGCGAAAGGCAGTTGATCTATTGCAGGAGATGCGGACTGAGA
ATGTTCCCGTCGTACCTGATACTTACAGCTTCGTCCACGCCATAACGGCA
TGCGGCAAGGCCGGGCAGGGGGAGGAGGCCTTGCGTATTTTTCAGGAGAT
GAGGGCCGCCGGTGATTCGGTCGTGCAAGGCCCCTTCGCCTACAGCGCGG
CCATCAGCGCATGCGGGAAGAGTGGAGATGCGAAGGCAGCGCTGAGTCTT
CTGAGAGATATGGAGGCCGACGGCGTCACCGTATCCCCGAACGTGTTCAC
CTACAATGCAGGTGTGAGAATCGTAACGAAAAAAGGCAGAAGTCATGAAA
AATGAATCCGCTTGTTTGACATATTACACCCCCAGGCACCAAAATGTTGT
ATTCTGTTGAACCGATGTGTTGTAATGTCAAGTTTTCAGAGTACGCGAGT
TAATCAATCGCCGCCGCTTCCACCATCATATTAGGGATGTCTTTTTTTTA
TGTTTCTGTTGCCTTCTTTTGCTCACTCGCTCACTCGCTCGTTATCTCCG
TATTGTGGTTTGTCATCATCCATGAACAGCCATTACCGCGTGTGGAGACG
CAGGCAGGGGGGACCAAGCTGTCGGTGTTTTGAAAGAAATGGAGGTGGAA
GGCAGCTCTGTAAGGCCTAACATTGCGTGTTACAACTCGGCTATATTGGC
GTGCGGAAAATGCGGCCAATGGGAGCAGGCGATGTTTATCTTTCGCGAAA
CGCTGAAGAACGACATTTCCGTCAAGCGCACGCGCGCCAGCACATACCTT
GCGGCTATCCAGGCTTGTCGACACAGTTATCAAGAATCACAGGTGGCGGC
TCTTGAGAAGGAAATGAAGGAGAATGGCATCGCGTTCAACGCAACGCGGC
TCTCGACATAGTGGACGGCCTGAGACACGATGACGTAATTTCACGACCAC
TCTATGGCTGGTACATAGTTGTGCGGAGGCTATGATTTGATTAGTGTGGA
GACGAGTGTCGAGGTATCTCCGCTAGTGTATTTGATTGCAGGACTTTACG
TGCGGTGGTATCTGCTACGTTCGTTGGGATAATGCGTATTATACATGTAC
GATTGTTTGTCGGGCAGTTCATGTTTCTTCCCTTGCGTGTTTTGTCTTCG
TTGACGTTACTCAGACAAGGGAAATGTGACCCCCAAATCATCTAGGAATA
CTTGGCAGAAAAAAACGGGTGTAGCTAGCCTGAGCTCTCCACGCAGATAC
ATCGGCAGGATGATGAAAAATTGGGAATACCTTCTGAAACATCACTTGGC
CAAGCGTGCACAGTGAACATACAGCCGCTATATTTGACCCCGGGTCGGAG
AAGTCAGATAAGAGAGGCTACTACAGTGCATTTTTGTTTCTTCCATCGCG
GCTGTAGAACCCTTGGTCAGCGGTCGGAAGCTGGGCGCATGATGATGCCT
CGGTTCTTATTTTGTACTATCGCGCGATGGGGTCAGCAGACAGTCGTTCG
TCAACGTTGGATCTGATGGCGATATACTCTGTGAAGTATAATTTTCCCTT
CCGCAGGCAATTCTGCCTGTACTAAGTTTTTTCCCCTACAAGTTGAAAAA
AAGGATAAATGCCAGCGATTAAACCTATACCAATACTGATTGAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig10875:1979..6973+ >mRNA_H-paniculata_contig10875.563.1 ID=mRNA_H-paniculata_contig10875.563.1|Name=mRNA_H-paniculata_contig10875.563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3048bp|location=Sequence derived from alignment at H-paniculata_contig10875:1979..6973+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGACTTCCCGTTATGTCGCCAGTGCTATTGTAAATGGGCCAACCCGAGC AGCCGGTAGGCGTTCCTTCCCCCCCGCAAAGCTCCCCAGCACACTCGGGC AGCAGGCAGGATTCCTATCCCGGTTATGTGGTGTGCTTATGCCGAAGACG ATAGACCATCGCGACGAAAACGCCACCTTCAAAAGCATTCATATGGCGCC TGGGCTGTCCGCAGGTGGAATGACGTGGAAGGCTCCGCCGGGGACACGCC TGCTGTCCACTTCGCCGATGTCGAGCACGACGGCGGGTCAGTCGGCGCCA TCGACCGAGAAATCGGACTCCGGCCTGAGCACGGGCCTGGCCAGCTCAAG TGATGTAGCGGGGGCACGCCGTGAAAATGCAGATAGTATGGCTGAGGCAC ATAAACAGTTGATGAGAAAATTGCAGCGAGCGAAAGATCGAGGGAATTGG CAACACTCTAAAGTGTTGCTGAGGTCGTATCTCAAGCACGAAGCGACGAA GGATATCGTTGATGTGAAAGTCTTCACATATGCGATGGGTGCCTGCGCGA AGGCTGGGGCATGGAAAGAGGCGTTGGAAATAATGCATCTCATGAACGTC AATGGGGTACAGCCGAACACGATCACGTACAACACTCTCATAAACGCATA CAGAAAGGATGGACAGTGGGAGAAGGCCATGGAGGTACTGAAAGAGATGA AGGCTCTTGGAGGTATCATCGCGCCTAACGAAGCCTCGTATGGATTGACC ATCAAAGCGTGCGGTAAGGGCGGTCAGGGGGATCTGGCTGCGGCATTGCT AAAGGAGCTGAGGGCGGGGGATAGCCCCGTCTCTGCCGAACTTGACCACT TCAATTCGACAATCTACGCGCTGGGCAATAGTAACCATTGGCGAAAGGCA GTTGATCTATTGCAGGAGATGCGGACTGAGAATGTTCCCGTCGTACCTGA TACTTACAGCTTCGTCCACGCCATAACGGCATGCGGCAAGGCCGGGCAGG GGGAGGAGGCCTTGCGTATTTTTCAGGAGATGAGGGCCGCCGGTGATTCG GTCGTGCAAGGCCCCTTCGCCTACAGCGCGGCCATCAGCGCATGCGGGAA GAGTGGAGATGCGAAGGCAGCGCTGAGTCTTCTGAGAGATATGGAGGCCG ACGGCGTCACCGTATCCCCGAACGTGTTCACCTACAATGCAGATGACTTC CCGTTATGTCGCCAGTGCTATTGTAAATGGGCCAACCCGAGCAGCCGGTA GGCGTTCCTTCCCCCCCGCAAAGCTCCCCAGCACACTCGGGCAGCAGGCA GGATTCCTATCCCGGTTATGTGGTGTGCTTATGCCGAAGACGATAGACCA TCGCGACGAAAACGCCACCTTCAAAAGCATTCATATGGCGCCTGGGCTGT CCGCAGGTGGAATGACGTGGAAGGCTCCGCCGGGGACACGCCTGCTGTCC ACTTCGCCGATGTCGAGCACGACGGCGGGTCAGTCGGCGCCATCGACCGA GAAATCGGACTCCGGCCTGAGCACGGGCCTGGCCAGCTCAAGTGATGTAG CGGGGGCACGCCGTGAAAATGCAGATAGTATGGCTGAGGCACATAAACAG TTGATGAGAAAATTGCAGCGAGCGAAAGATCGAGGGAATTGGCAACACTC TAAAGTGTTGCTGAGGTCGTATCTCAAGCACGAAGCGACGAAGGATATCG TTGATGTGAAAGTCTTCACATATGCGATGGGTGCCTGCGCGAAGGCTGGG GCATGGAAAGAGGCGTTGGAAATAATGCATCTCATGAACGTCAATGGGGT ACAGCCGAACACGATCACGTACAACACTCTCATAAACGCATACAGAAAGG ATGGACAGTGGGAGAAGGCCATGGAGGTACTGAAAGAGATGAAGGCTCTT GGAGGTATCATCGCGCCTAACGAAGCCTCGTATGGATTGACCATCAAAGC GTGCGGTAAGGGCGGTCAGGGGGATCTGGCTGCGGCATTGCTAAAGGAGC TGAGGGCGGGGGATAGCCCCGTCTCTGCCGAACTTGACCACTTCAATTCG ACAATCTACGCGCTGGGCAATAGTAACCATTGGCGAAAGGCAGTTGATCT ATTGCAGGAGATGCGGACTGAGAATGTTCCCGTCGTACCTGATACTTACA GCTTCGTCCACGCCATAACGGCATGCGGCAAGGCCGGGCAGGGGGAGGAG GCCTTGCGTATTTTTCAGGAGATGAGGGCCGCCGGTGATTCGGTCGTGCA AGGCCCCTTCGCCTACAGCGCGGCCATCAGCGCATGCGGGAAGAGTGGAG ATGCGAAGGCAGCGCTGAGTCTTCTGAGAGATATGGAGGCCGACGGCGTC ACCGTATCCCCGAACGTGTTCACCTACAATGCAGCCATTACCGCGTGTGG AGACGCAGGCAGGGGGGACCAAGCTGTCGGTGTTTTGAAAGAAATGGAGG TGGAAGGCAGCTCTGTAAGGCCTAACATTGCGTGTTACAACTCGGCTATA TTGGCGTGCGGAAAATGCGGCCAATGGGAGCAGGCGATGTTTATCTTTCG CGAAACGCTGAAGAACGACATTTCCGTCAAGCGCACGCGCGCCAGCACAT ACCTTGCGGCTATCCAGGCTTGTCGACACAGTTATCAAGAATCACAGGTG GCGGCTCTTGAGAAGGAAATGAAGGAGAATGGCATCGCGTTCAACGCAAC GCGGCTCTCGACATAGCCATTACCGCGTGTGGAGACGCAGGCAGGGGGGA CCAAGCTGTCGGTGTTTTGAAAGAAATGGAGGTGGAAGGCAGCTCTGTAA GGCCTAACATTGCGTGTTACAACTCGGCTATATTGGCGTGCGGAAAATGC GGCCAATGGGAGCAGGCGATGTTTATCTTTCGCGAAACGCTGAAGAACGA CATTTCCGTCAAGCGCACGCGCGCCAGCACATACCTTGCGGCTATCCAGG CTTGTCGACACAGTTATCAAGAATCACAGGTGGCGGCTCTTGAGAAGGAA ATGAAGGAGAATGGCATCGCGTTCAACGCAACGCGGCTCTCGACATAG back to top
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