mRNA_H-paniculata_contig9234.17028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9234.17028.1
Unique NamemRNA_H-paniculata_contig9234.17028.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9234.17028.1 vs. uniprot
Match: A0A6H5K0I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.240e-7
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   10 KISPHLAAAQGDLATIATYLKEGGLVDKRDTDQWTPCMVAVRE 138
            KI  H AA  G+LA +  +LK GG+VDKRD+D+WTP M++VRE
Sbjct:    5 KIDIHEAAGDGNLAEVRAFLKAGGIVDKRDSDRWTPLMLSVRE 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9234.17028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0I9_9PHAE3.240e-758.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9234contigH-paniculata_contig9234:9162..9509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-10_004810.1
Exons1
Model size348
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.9295664-CDS-H-paniculata_contig9234:9161..95091622931148.9295664-CDS-H-paniculata_contig9234:9161..9509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9234 9162..9509 +
1691481612.6835222-CDS-H-paniculata_contig9234:9161..95091691481612.6835222-CDS-H-paniculata_contig9234:9161..9509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9234 9162..9509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9234.17028.1prot_H-paniculata_contig9234.17028.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9234 9162..9509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9234.17028.1

>prot_H-paniculata_contig9234.17028.1 ID=prot_H-paniculata_contig9234.17028.1|Name=mRNA_H-paniculata_contig9234.17028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MATKISPHLAAAQGDLATIATYLKEGGLVDKRDTDQWTPCMVAVREGHVA
VAQQLLRAGANVEARESDRWTALHVAAANGQLQCCQMLLDRGAKNTVLDE
NKRTPLHWATRCRRK*
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mRNA from alignment at H-paniculata_contig9234:9162..9509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9234.17028.1 ID=mRNA_H-paniculata_contig9234.17028.1|Name=mRNA_H-paniculata_contig9234.17028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig9234:9162..9509+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACTAAGATATCCCCACACCTAGCTGCCGCCCAGGGAGACCTTGC
CACCATAGCAACCTATCTGAAAGAGGGCGGGCTGGTCGACAAACGAGATA
CAGACCAATGGACGCCGTGTATGGTGGCCGTGAGGGAAGGCCACGTAGCG
GTTGCGCAGCAATTGCTGAGAGCGGGAGCGAACGTGGAAGCGAGGGAGTC
GGACAGGTGGACGGCGTTGCACGTGGCGGCCGCTAACGGACAACTGCAGT
GCTGCCAAATGTTGCTGGACAGAGGAGCCAAAAACACGGTGCTCGATGAG
AACAAAAGGACACCGTTGCATTGGGCGACGAGGTGCCGAAGAAAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9234:9162..9509+

>mRNA_H-paniculata_contig9234.17028.1 ID=mRNA_H-paniculata_contig9234.17028.1|Name=mRNA_H-paniculata_contig9234.17028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig9234:9162..9509+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACTAAGATATCCCCACACCTAGCTGCCGCCCAGGGAGACCTTGC
CACCATAGCAACCTATCTGAAAGAGGGCGGGCTGGTCGACAAACGAGATA
CAGACCAATGGACGCCGTGTATGGTGGCCGTGAGGGAAGGCCACGTAGCG
GTTGCGCAGCAATTGCTGAGAGCGGGAGCGAACGTGGAAGCGAGGGAGTC
GGACAGGTGGACGGCGTTGCACGTGGCGGCCGCTAACGGACAACTGCAGT
GCTGCCAAATGTTGCTGGACAGAGGAGCCAAAAACACGGTGCTCGATGAG
AACAAAAGGACACCGTTGCATTGGGCGACGAGGTGCCGAAGAAAGTAGAT
GGCGACTAAGATATCCCCACACCTAGCTGCCGCCCAGGGAGACCTTGCCA
CCATAGCAACCTATCTGAAAGAGGGCGGGCTGGTCGACAAACGAGATACA
GACCAATGGACGCCGTGTATGGTGGCCGTGAGGGAAGGCCACGTAGCGGT
TGCGCAGCAATTGCTGAGAGCGGGAGCGAACGTGGAAGCGAGGGAGTCGG
ACAGGTGGACGGCGTTGCACGTGGCGGCCGCTAACGGACAACTGCAGTGC
TGCCAAATGTTGCTGGACAGAGGAGCCAAAAACACGGTGCTCGATGAGAA
CAAAAGGACACCGTTGCATTGGGCGACGAGGTGCCGAAGAAAGTAG
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