mRNA_H-paniculata_contig9182.16989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9182.16989.1
Unique NamemRNA_H-paniculata_contig9182.16989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9182.16989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9182contigH-paniculata_contig9182:1674..7888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size440
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9182.16989.1prot_H-paniculata_contig9182.16989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9182 1719..7888 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.365622-UTR-H-paniculata_contig9182:1673..17181622931143.365622-UTR-H-paniculata_contig9182:1673..1718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9182 1674..1718 +
1691481610.3275766-UTR-H-paniculata_contig9182:1673..17181691481610.3275766-UTR-H-paniculata_contig9182:1673..1718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9182 1674..1718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.384384-CDS-H-paniculata_contig9182:1718..18371622931143.384384-CDS-H-paniculata_contig9182:1718..1837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9182 1719..1837 +
1691481610.3452213-CDS-H-paniculata_contig9182:1718..18371691481610.3452213-CDS-H-paniculata_contig9182:1718..1837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9182 1719..1837 +
1622931143.399643-CDS-H-paniculata_contig9182:7614..78881622931143.399643-CDS-H-paniculata_contig9182:7614..7888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9182 7615..7888 +
1691481610.359853-CDS-H-paniculata_contig9182:7614..78881691481610.359853-CDS-H-paniculata_contig9182:7614..7888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9182 7615..7888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9182.16989.1

>prot_H-paniculata_contig9182.16989.1 ID=prot_H-paniculata_contig9182.16989.1|Name=mRNA_H-paniculata_contig9182.16989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MRQRPRSSSTTSRFSSRVTIQLLLEAVGLLSCVPFCTSFMAMSAFVPTML
LSGSTRSLTTQLRWHHASSSPTTTASWIATAAAPALLAQRRWTTATMAMT
MGGSSSGNIREGDRLFSSPAETPAGCSAAPG
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mRNA from alignment at H-paniculata_contig9182:1674..7888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9182.16989.1 ID=mRNA_H-paniculata_contig9182.16989.1|Name=mRNA_H-paniculata_contig9182.16989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6215bp|location=Sequence derived from alignment at H-paniculata_contig9182:1674..7888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGACCTCGCACGCTTACACGGTGTCACGACTTGAGAGCACAGTATGAG
ACAGCGACCGAGGTCGTCCTCGACAACGTCCAGATTTTCCTCAAGGGTGA
CGATCCAGCTTCTCCTGGAGGCCGTCGGTTTGCTGAGCTGTGTGCCTTTC
TGCACGTCTTTCATGTGAGCAATTCAAACCAACTGTAAGAAGTAGCACAG
TAATTGTGTACAAACAGTGAACAGTTTATGTACTAGGTTTTTCTTCATCC
TATTTCAACAGGCGTCACAAGTCCTACCTCCGGACTTGTTCGCCAACATC
TTGCGGGCTATATATTTCCCCCTCAGGTCAGCTGTAGAGTGTTGAAGGAA
GAGTTGCTGCCATAGCATGTGTCAGGCGCTTCTTTCCGATGTCTCGGTGT
GATCATGCAACCCTCCACAGGCCGTTGGTACAGAGGTACTGACTACGAGA
ACATTTGGTACTTGAAGAGGAAAGCACTGTACATACATTTTAATAGTAAT
AATTGATACTTCCAGTAGACAATACTGTCTTGTGCACTGTGAGAATACTG
GGTTTTGTACTATAATAGGCTTTTGAATTTGTGCAATAAGAAAGCCCTAT
GAACAGTGTATATGTCGGGGGGGGGGGTTCCTTCGATAAATGCGAACCTC
CCTCGGATGTAAGTACTCGCGATAAATCGGCAAGACCAACTGGCAGTACC
AGTGGTTCCTTCCAGCCTCCGAGTAAAAATATCTAGCTACTCTCGGCTAG
CAAACACGTAACCACCCATATATGATATTTCAGGGGACGCTCCGCCTGCG
GAAAGTTGGGTAGCACCACCAGTCCGTAGGGAATGCAATACGTACTCGTA
CGGGTTCATACCCGCTTTTGCTACCAACGCCCGCAGCGCTTTCGTCGCCT
GCCCCTGAGTCCACCACACTGGTACCCCATCCTTCCGCATGTACGTCATC
AACGGTGCATCTATGTGTGCAAGACTTTGGAATCAAGACAGTAATTCCAC
CACGAGATCCACGGCCTCTCAGAGCCCAGCCTGTCCATCAATAGCACCGC
TTTTCATGCAGGTCACAAATCGCCCCTCATCGCATCTGGTCTCCCTTGGA
TACACGAAACCACACCTAAATCCGGTCAGCTAACAACGAAAATGACCATT
TCAACCGTGGCGTTCCCTGGAACAATGCAACACTATTCGGCTTTTATACG
CCCAGCGGCTTCTGCAAATATCTCAGACGCCCGCGTCAAAAAGGAAAACG
ATACCCTCCAGACATGAAAAAACACACGGCCCCCAACTCCTCATTGTGGA
ACCAAGTGCTCCACGACAGACGAACTCCCCCAAGATACGGCCGCCGCATC
CGTAGGTGCGTCCCAAATTCAGCATGACTCCGTTCCATTGCTTTGATGGC
CTTCTTGACGAGAAAATGGTCGATGGGCAGGTCGAACTGATGCATCACTT
CATAAAAATATTTCATTGCCGCTAAATTGTTCTCAATCGTTTTCGCTTGC
TGCAGCCCATACACCAAACACGCATACGACACATTGGACGAAAACATTTG
CACATACTCACCCCCGTCACGTTTCCCCCTTTCGGCAAAAAATCCAGCTG
GTTCATCTCGCACTGGAAATGAACGAATGACCCAAGATATTCTTGGTAAG
TCTCGAATCAGACGGTCACGCAATGAATTTTCGGGCGACCTCGAATCCAA
AATGCTAGAATAGAGCTCTCGCCCTCTGTCCCCGGTGACCCCCGGTGACC
TGTTCATGCCACGGGACATTGGGTCGCAAAGAAATAAAGTTGGTGGCGAT
CAAATCTACCGCCTAACGCGAAATCCCATCTGCTGCGTAATGAAGCGCCC
CCGGGCTATTTTTGGCCTCAAAATGCCATTCATTAGCTACTTCCAGGACT
CCCAAAAATTGCGTGAGCGCTCCCCCTCTCGTCTCTTTGCCCCCCCCCGG
CATTTAGTGATCCATTGCACGGCGAAGCTATTGTCTCCCCGTAGCAAAAC
GTAATCTCTATCCTCACTCGGTTTTTCTTCGAGTACGACTATCATCAGCC
CTGCGGACATAGCCATGCCCAACAACTCGAGAACATTGATTGAAATGTCA
TCCTCGCTGTGAATCTCGTGACAGCAAACACGCTGTCGTTGTTCAGCCAT
TAAATCATATCGCCACCACTGGCCGGTTTCCACACAGAAAACGCTGACAG
CTGATCCCCATGCTTCCGAAAAACCATGAACGCGTCGGCGGCCGCAATAA
CAAATGATATACGTGAGCAAACATTCGACCTTCCAGAATCGCACTGCCGT
TGAAGGTCACCCACCTCCAAAAATCCACCTCACCGTGAAATCCGGGACCT
ACTGACACGCTTCGCTGCAGTCCAGCCGAACGCACGGAAAATCCCGCGAT
CCCGACTCCGGTCTTGTGTATCCCTGGCAGATTTACTGCTTGCAATAACC
ATCGTACAAAAAATGGCCCCGGGCCGGATAATGATTGATACATGTAAAAG
AAGCCCATTCAAGGACTCGATTTCTTTGATCGTTGCATGCAATCGCGATG
GCGACCACGCCCCAGTCAATATCTGTAGGCCTGTGTACCTTTTTTGCAGA
AAATGTAATCGTTAGCGATTCAGTATCAATCGTCCACCCTATCACCTCGT
TGCATATATCCCAGCCGGACATATTTTTGGCTGATACTAGTGTCGGGTCA
TCAACACCCCGCTCACCCAGCAAGCGAACATGGTCAGATGCCCGTGATTG
CGTCGCGCGCAGGCATCGCCGAAAATCTAACCAGTACATAATCTCCATTA
ATATAGCATCATCCGTATAATACCGTACCGAAGATCGTATCGGAAATGCC
CCCGCCTGCGCCCGGGACAAGCGCGCAATCCGCAAGAATGAGGCTAACGG
GCCAATTACATGGCTCCGGCACCGTCACCCCCGTCGAAGCCGCCCGGCCG
GCATCCGATATGCGTGCACCACGATAGGTTGTGTGATTATGTGAGTGTTG
CGAGGGCAGCCGCAGGTAGTCCCGAAAAACCGAGCCACTACGCCACCCGA
ATTATAGCCGGAGATCGGACACAACAGTATCATCCACAGTGCCATGTTGT
TGAAGCAAATACATCACACATAATAACACATTCTTGATGACATCCCCAAG
TTCAACGGGGGGAGCACGCGTAAGTATGTATCCGCATTGACACTTGTGGA
ACCGTCAGGATCGTTGTGGGGGGAAAGAAAAGTCGTGTATGATGCGAATT
TTTTCTTCTACCACCCCTACTGGGGATATGCGCAGCTGCGAATCTCATTG
GCACGATGTTTGTCGAACACGATAGCTCTGCCGTTAAACACATCTGTTGT
CCCTTTAAACCGTAACCTAGGAGCATGCGGTACTGTACTGTGGTGATTGC
TGTATTCTAACGCCGCGAGCCCAGCTACCCCCATATTTAACATCAACCCC
TAGCACCTGGTTTCAGCGTTCATACCAGATGATTCACGTCAGGGAACTTC
TTGATACCCCTCAAACCAGTGTGATAAAACGACCAACATCAATATACGAT
GCAAATAATGAAAGACTAATTGCATCAACTAGGCGGCCAACAACATTACC
CCCCACCAATGCAAACATGTCATGCCCCAATTGTGCAATCGCCCTCAAGT
GTTCATTACCTTTCTCATCATCACGAAGTAATCTAACGCGGTGTTTGTTT
CCATTGCTCAATCAACTCGGGAAACTCGGGCGAATTTTTTCCTGCCACGA
TCCGTTCTTCCTCCGAAACAGAATCAGGCGGCACACACACACACACACAC
ACACACACACACACAGATTTGGCACGCCTGGAGTGATCCAGGAGTAAGCG
GCTCACGAGCGCTGACGGCTTGGTACGCCTGCGCCAAGGCCTCCCGAGCG
AGGTCCCTCGTTCCTCCACGACTCTGCGCTGCGCCGCGGCGCTGCACGCC
CAAACCCTTTGGCCCCACCGTGTTCCGGTGAGCCCCGCACCTCTATCCAG
AAGCGCCCAATCCACCTCGGGTCGCTGCCGCCGCCTCGCAGCAGACGGTC
TACGACCACCACCATGTTGCTGCGATGCCGAGGAACGGCCTGCTGCGCCG
GATCCCGTTCCTGCGGCCGCGCCCAATCCCGCGTCCCGCGTTAGGACCCG
ACCCGCGCCCTCCCGCTTGTACACGCTGGAGGCGCGCCACCTCCACCTCG
GCTTTTGATAGTTCATAACCTTCTACGTGCATGTACTTGCAGCGCACATC
GCCAAAGTCGCAGTGACCCTTCTGCCATTTAAAGCAGGTAGGTTTTTGCT
TCACCACTGGCTTCCGGGCGTTTTTTTATCCACCTTTCCCAGCGGTTTCC
TTCGGCGCAGTACGCTTTACGCCTTTCTGTGTCTAATTTTGTTCCACCGA
CATGTGTCCCGTCCTCACGTACTCGGTCAACGATGGGAACGTCGAGAACG
CCGGCCTCGGCACATAGCTCACAGCGGTCGGCGGTGTCGTGTGAGTTTCC
AAGACGTGATGCGCATCCCTCGTCATCGTTTCAGTCCATCCCAGCAGATC
GTTGTTGACCAGTTTTGCGAACATGTCCAATTGATCCGCCACCAGCTCAG
CGCGAGTCATTCCGTACCGACGAAACGACTGTAGGACGGCGTTGAACGCT
ACGTCCAACGCCTGCACCCGCGTTTCCTCGTTGCCGTGTTGCCCGCCCCA
GTCAGCCCCGCGCTAATCGTCATGCAAATTGCGTGCTTGACGAGATGTAG
CCGGTCTACAACGGAGATGTACACGCTACTGGGCACCCCAAAATGCCCTC
TCGGCCCAAACGCCATAACGTCGATCGCGCCCATTTCCATCAAAGTGGTA
AAAACTGCCATCGTCACGAAGAGGGCGTCCCGTGAGAGGCTCTGCAGCGC
GTTCCGGTTCGTAGGGGGCGGCGTCCTCTCTCTCTCAGTATCCAGATTAT
GCGAATGGGGATTTTGTCCCACGAACTGATACACGTCTCGTTGAATTCTT
TGCGCTGTAGCGCCACCGCCTCAGCCGCTGCGCCGCCAAATCCCGCCCCG
GCATACCCCTCGGCACCCTGACAGACACGCGGATAGCCACCCCCCGTCCG
TGCTGTGCCCGCGGTCCCCGAGTCGGCATGTGTATAGACACTCCCCGCCT
CTGCTGTACCCGCGACCCCCGAGTAGGTTGGGTGTGGAAACGATGCCGCC
GCGTAGATCGACTGTGCCGAGTATGCTGGGGTCGTCGCCGAACTACATGC
GTAGATGTGCCACAGCAACCACGCGCTCGAGGCGCTTTGACAAAACGGAC
GCGGAGCCGCCATTGCTGCCGCTGCCTCTGCTGCTGCTGCTGCTGGGTGG
GAAACTTGGGCAGCACGCAGCGCTGTTAGCTCTGCGAGGATCTTGTTAAA
ACCGCCGCCCGTATCCTCTCGCATCTCACGCATCTCTCGCCGCACCTTGC
CAACTTCATGACGAACCATCACGTCTACGGGTGACTCATTGTCAAACTCC
AGACGGCCGGCTTCTTCATCCGCATCGGTGATTGTTCCACCCCCGTCCAA
GGCAGCGGGTAGGCCCTCGTCGCCATCGTCCACGGCTCCTTGTCCGTCAG
CGCCGAGACCGCTCATCAGCTTCAACCGAACTACAGACAGGGAAAGCGAG
AAAATGATGCGAATCCTGGCAGAACAGTACAGCAGTGTTCGTGCAGCCAC
ATTAACTTTTGACAAGGTTTGCAAAGCCTGATACTCCCTTGTAAAGGTTG
CTGTAGTCCATGTCGTGCGTGATCGAAGAGGCGCGAGAAGTTCCCGTACT
CGTTCATGATGGATATGTCAGAAATTTTGGTCATGTCAAGAGGATCCTGT
CGTAATCAGCAAGAAGCTGCACATCCAAACGTTCTTTTACATCAATTCAG
AAAGCCTCCGCTCCCGTCCCCCTTCCCTCTCTAATCCCCAGGGCGATGTC
AGCGTTCGTCCCGACGATGTTACTGAGTGGATCAACCAGATCATTAACAA
CACAACTGCGGTGGCACCACGCATCCTCATCACCAACGACAACGGCGTCG
TGGATAGCCACGGCCGCTGCACCAGCGCTACTTGCCCAACGTCGCTGGAC
AACAGCAACGATGGCGATGACGATGGGTGGGTCATCGTCGGGGAACATCA
GGGAAGGGGACAGGTTGTTTTCGTCCCCTGCTGAGACGCCTGCTGGGTGT
TCCGCAGCGCCCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9182:1674..7888+

>mRNA_H-paniculata_contig9182.16989.1 ID=mRNA_H-paniculata_contig9182.16989.1|Name=mRNA_H-paniculata_contig9182.16989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig9182:1674..7888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACAGCGACCGAGGTCGTCCTCGACAACGTCCAGATTTTCCTCAAG
GGTGACGATCCAGCTTCTCCTGGAGGCCGTCGGTTTGCTGAGCTGTGTGC
CTTTCTGCACGTCTTTCATATGAGACAGCGACCGAGGTCGTCCTCGACAA
CGTCCAGATTTTCCTCAAGGGTGACGATCCAGCTTCTCCTGGAGGCCGTC
GGTTTGCTGAGCTGTGTGCCTTTCTGCACGTCTTTCATGGCGATGTCAGC
GTTCGTCCCGACGATGTTACTGAGTGGATCAACCAGATCATTAACAACAC
AACTGCGGTGGCACCACGCATCCTCATCACCAACGACAACGGCGTCGTGG
ATAGCCACGGCCGCTGCACCAGCGCTACTTGCCCAACGTCGCTGGACAAC
AGCAACGATGGCGATGACGATGGGTGGGTCATCGTCGGGGAACATCAGGG
AAGGGGACAGGTTGTTTTCGTCCCCTGCTGAGACGCCTGCTGGGTGTTCC
GCAGCGCCCGGGGGCGATGTCAGCGTTCGTCCCGACGATGTTACTGAGTG
GATCAACCAGATCATTAACAACACAACTGCGGTGGCACCACGCATCCTCA
TCACCAACGACAACGGCGTCGTGGATAGCCACGGCCGCTGCACCAGCGCT
ACTTGCCCAACGTCGCTGGACAACAGCAACGATGGCGATGACGATGGGTG
GGTCATCGTCGGGGAACATCAGGGAAGGGGACAGGTTGTTTTCGTCCCCT
GCTGAGACGCCTGCTGGGTGTTCCGCAGCGCCCGGG
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