mRNA_H-paniculata_contig91.16934.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig91.16934.1 vs. uniprot
Match: A0A6H5JLH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH3_9PHAE) HSP 1 Score: 208 bits (529), Expect = 3.170e-58 Identity = 159/422 (37.68%), Postives = 199/422 (47.16%), Query Frame = 2
Query: 197 GRFDAGAWENMPTS-------------NMVDKHLKPAVEDGAHVD-------LDIDQLPTFVFFA-DGGR-RREDVVGGSIARACRAKLEAKLLSFSV----------LHGNDSL---------PVGEGTAATPR--ATDTAGAGNGIPSDTNIDKVGISAGVRLENYAID------NILEVPSREELFDIVTSSGRTAEQGPVVVMYHAPWCRKCAYLAPVFRHLATKQVTSCSLAEGSGDGENSWSRKA-IFCRVDVS--AWGGK-AYRRTAAGRVGAASLVT-----------------------RDIADTRANEGGARKSAHVGEARNDIQA----------EEEKRRVSLLHEGSPSMEKCEVCEGSGFVSCGEXXXXXAVERCSSDGQHKLAVTCPACVGYKRLRCPACGGQCYMC 1204
G FDA AW+NMP+S + V A++D V+ + +D+LPTFVFF D GR RRE+V GG AR C KL +L S S L NDS VG G A T A GA G N G+ G +D NI+E+ + EL ++ + G QGPVVVMYHAPWCRKCAYLAPVFR LA Q TS + + G + S +FCRVDVS +WG + A R ++ AS T R+ A A + VG+ + A E + LLH GS ++E C+VC GSGFV CGE AV R S DG+H +AVTC +CVGYKRLRCP+CGG+CYMC
Sbjct: 99 GMFDADAWKNMPSSPPLVTAPPTSLNPSAVQLSANGALDDEGGVEGREEPISVYVDKLPTFVFFVRDNGRHRREEVTGGRDARTCATKLRERLASISSPGSTWTNSGSLDDNDSPLRPSGAGEGGVGGGVARTRSDGAAVVGGAAEGPNRLDNETDTGMGRGNGGMGAIVDGTGSPTNIVEISDKRELLRVLGARGEG--QGPVVVMYHAPWCRKCAYLAPVFRRLAAAQATSVGVTKAGGSSSDRGSSGGPLFCRVDVSDPSWGRRRAVRGSSVAPATVASEGTAAXXXXXXXXXXXXXXXXXVRRARNKASIAAGASSQARGLGVGDRAAGLMAADATATPANAEGKIAETELLHAGSQAVENCDVCGGSGFVPCGECGGLGAVSRASPDGKHTMAVTCSSCVGYKRLRCPSCGGKCYMC 518
BLAST of mRNA_H-paniculata_contig91.16934.1 vs. uniprot
Match: D7FW10_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW10_ECTSI) HSP 1 Score: 132 bits (333), Expect = 1.920e-30 Identity = 127/368 (34.51%), Postives = 162/368 (44.02%), Query Frame = 2
Query: 203 FDAGAWENMPTS----NMVDKHLKPAV---------------EDGAHVDLDIDQLPTFVFFA-DGGR-RREDVVGGSIARACRAKLEAKLLSFSV----------LHGNDS--LPVGEGT------AATPRATDTAGAGNGIPSDTNIDK-----VGISAGVRLENYAID------NILEVPSREELFDIVTSSGRTAEQGPVVVMYHAPWCRKCAYLAPVFRHLATKQVTSCSLAEGSGDG-ENSWSRKAIFCRVDVS--AWGGKAYRRTAAGRVGAASLV---------------------TRDIADTRANEG-----GARKSAHVGEARNDIQAEEEKR--RVSLLHEGSPSMEKCEVCEGSGFV 1063
FDA AW+NMP+S L P+ E ++D+++LPTFVFF D GR RRE+V+GG AR C +L +L S S L NDS P G G AA + A G +D +G +G + N +D NI+E+ + +L ++ + G QGPVVVMYHAPWCRKCAYL PVFR LA Q S + EG G E S +FCRVDVS +WG RR G A S V T IA +++ G R + V AE E LLH GS ++E C+VC GSGFV
Sbjct: 101 FDADAWKNMPSSPPPVTAPPTSLNPSAVQLSSNDALDGEGEEEREEPTNVDVEKLPTFVFFVRDKGRHRREEVIGGRDARTCATELSERLASISSPGSTWTNSGSLDDNDSPLRPSGAGEGGVGGGAARTSSDGAAVVGGAAEGPDRLDYETDTGMGRGSGDMVAN--VDGTGNPTNIVEISDKRDLLRVLGALGEG--QGPVVVMYHAPWCRKCAYLTPVFRRLAAAQAPSAGVREGGGSSIERGSSEGPLFCRVDVSHPSWG---RRRAVRGASVAPSTVASAGTAAXXXXXXXXXXXXPNTAAIAAGASSQAQGLGFGDRAAGWVAADATTATAEAEGTIAETELLHAGSQAVENCDVCGGSGFV 461
BLAST of mRNA_H-paniculata_contig91.16934.1 vs. uniprot
Match: A0A7S3UU24_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU24_HETAK) HSP 1 Score: 65.9 bits (159), Expect = 3.040e-8 Identity = 56/182 (30.77%), Postives = 80/182 (43.96%), Query Frame = 2
Query: 659 VVVMYHAPWCRKCAYLAPVFRHLATKQVTSCSLAEGSGDGENSWSRKAIFCRVDVSAWGGKAYRRTAAGRVGAASLVTRDIADTRANEGGARKSAHVGEARNDIQAEEEKRRVSLLHEGSPSMEKCEVCEGSGFVSCGEXXXXXAVERCSSDGQHKLAVTCPACVGYKRLRCPACGGQCYMC 1204
+V Y A WCRKC YL F+ +A EN +F +D+ G S R I + ++ + + G++ ++EEK ++ C C+ +GFV XXXXX V R S G+H++A CP CVGYK+ RCP CGG+C MC
Sbjct: 187 LVCKYGASWCRKCKYLDNPFKKIA----------------ENCQDLSFLFLDIDID---------------GLVSAEER-IGELSESDSSGPRQENFGDS-----SDEEK------------IKNCLRCDSTGFVEXXXXXXXXXVLRIS--GEHEVADICPVCVGYKKTRCPECGGKCLMC 317
BLAST of mRNA_H-paniculata_contig91.16934.1 vs. uniprot
Match: A0A7S0BK45_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BK45_9RHOD) HSP 1 Score: 58.2 bits (139), Expect = 4.470e-7 Identity = 27/70 (38.57%), Postives = 37/70 (52.86%), Query Frame = 2
Query: 995 VSLLHEGSPSMEKCEVCEGSGFVSCGEXXXXXAVERCSSDGQHKLAVTCPACVGYKRLRCPACGGQCYMC 1204
S+ + ++ C +CE +GFVSC A E + K V C CVG +LRCP CGG+C+MC
Sbjct: 35 TSMSEKSEDQVKDCRMCENTGFVSC------VACEGQGTTVTGKYTVFCSECVGRGKLRCPTCGGKCFMC 98 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig91.16934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig91.16934.1 >prot_H-paniculata_contig91.16934.1 ID=prot_H-paniculata_contig91.16934.1|Name=mRNA_H-paniculata_contig91.16934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=386bp MTSYAIRATLSLTAVGALLSVQPPRRPILAPTQIRNVTPSSRLKTNANGGback to top mRNA from alignment at H-paniculata_contig91:26355..27928- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig91.16934.1 ID=mRNA_H-paniculata_contig91.16934.1|Name=mRNA_H-paniculata_contig91.16934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1574bp|location=Sequence derived from alignment at H-paniculata_contig91:26355..27928- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig91:26355..27928- >mRNA_H-paniculata_contig91.16934.1 ID=mRNA_H-paniculata_contig91.16934.1|Name=mRNA_H-paniculata_contig91.16934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2316bp|location=Sequence derived from alignment at H-paniculata_contig91:26355..27928- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |