mRNA_H-paniculata_contig9095.16926.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A6H5JTI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI7_9PHAE) HSP 1 Score: 285 bits (728), Expect = 1.940e-84 Identity = 176/344 (51.16%), Postives = 204/344 (59.30%), Query Frame = 1
Query: 1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRRGQGGPDGGKIAAHRYLDSNPEPTRSEVENVPAVPAPARARAGSLAEE--AEVNGREAGIACPSAGAK---------WGDYEGPESIIDLALRCALIDD--------GGTANG-------LVTFVHEVKKNVGPQ 954
VVV+SNFTSALDVL +A N WGFLRLDGGT + ERQ+LVDRFNRA PE+LFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQ K+V MYRLL+TGTLEESIFQRQIFKGALYDLIHDSN+ S+ GK+ RGFS +EL+ELFVLK ET DTYDKLRRG+ A + R + +L E A +G E G P+A A W DY GP +++D ALR AL+++ GG+ +VTFV EVK+ P+
Sbjct: 748 VVVASNFTSALDVLETLAERNSWGFLRLDGGTTTNERQNLVDRFNRASPEDLFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQTKEVCMYRLLSTGTLEESIFQRQIFKGALYDLIHDSNDDPSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXGKSGRGFSQEELKELFVLKAETRSDTYDKLRRGRAAATPRAAGAAGVREGG------------------RYQEVTLEREVGARGDGEEDGWQGPTAAAAPVVDVEEQAWEDYVGPSAVVDKALRLALLEEATGTPSQVGGSXXXXXXXXXXVVTFVREVKRGGRPE 1067
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: D8LMS0_ECTSI (SNF2-related domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS0_ECTSI) HSP 1 Score: 283 bits (724), Expect = 5.340e-84 Identity = 170/316 (53.80%), Postives = 198/316 (62.66%), Query Frame = 1
Query: 1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRRGQGGPD---GGKIAAH---RYLDSNPEPTRSEVENVPAVPAPARARAGSLAEEAEVNGREAGIACPSAGA----KWGDYEGPESIIDLALRCALIDDG-GTANGLV 915
VVV+SNFTSALDVL +A N WGFLRLDGGT + RQ+LVDRFNRA PE+LFLF+LS KAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQ K+VSMYRLL+TGTLEESIFQRQIFKGALYDLIHDSN+ S+ G K+ RGFS +EL+ELFVL+ ET DTYDKLRRG+ G +AH RY + PE AG+ + E GR A A A W DY GP +++D ALR AL+++ GT++ +V
Sbjct: 778 VVVASNFTSALDVLETLAERNAWGFLRLDGGTTTNARQNLVDRFNRASPEDLFLFYLSTKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQTKEVSMYRLLSTGTLEESIFQRQIFKGALYDLIHDSNDDPSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-KSGRGFSQEELKELFVLRTETRSDTYDKLRRGRAAATPTAAGAASAHEGGRYQEVTPE-----------------REAGARGDGEEDGGRGATAAAAPVVAVEEEAWEDYGGPSAVVDKALRLALLEEPTGTSSQVV 1075
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: UPI000D1C7E7D (DNA repair and recombination protein RAD54-like n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7E7D) HSP 1 Score: 171 bits (434), Expect = 2.350e-44 Identity = 96/212 (45.28%), Postives = 123/212 (58.02%), Query Frame = 1
Query: 1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSN--EPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRR 630
+V++SNFT LD++ A+ + W F+RLDGGT ERQSLV+RFNR + E +F LS+KAGG GLNL+GANR+VL D DWNPA D Q M+R+WR GQ K V +YRLL+TG++EE I+QRQI K L D + +P+ +RT N + FS ELREL L ET C+TYD L R
Sbjct: 571 IVIASNFTQTLDLIEAMCNEHSWKFVRLDGGTMISERQSLVERFNRRIGEAS-IFLLSSKAGGTGLNLIGANRLVLVDPDWNPANDAQVMSRIWREGQPKPVKIYRLLSTGSIEEKIYQRQIMKKDLTSFFGDQSTYQPTCKRT--------------------------------------NDQKFSRQELRELLKLPSETKCETYDLLCR 743
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A2K1K7S9_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K7S9_PHYPA) HSP 1 Score: 170 bits (430), Expect = 1.280e-43 Identity = 92/215 (42.79%), Postives = 128/215 (59.53%), Query Frame = 1
Query: 1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRRGQGGP 645
VVV SNFT LD++ + + GW +LRLDG T + +RQ LVD+ N + + +F+F LS+KAGG GLNL+GANR+VLFD DWNPATD QA+AR+WR GQ K V +YRLL+TG++EE I+QRQI KG + + + ++++ +GR+ FS +EL+ELF L T CDT+D + R + P
Sbjct: 861 VVVVSNFTRTLDLIQDMCTSQGWNWLRLDGSTEASKRQLLVDQLNSGVGD-VFVFLLSSKAGGTGLNLIGANRLVLFDPDWNPATDSQAIARIWREGQLKPVLIYRLLSTGSIEEKIYQRQIMKGGMSAAVEGDADVHTKKS--------NIGRH-----------------------------FSKEELKELFTLNLATNCDTFDLISRTKTAP 1037
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A7S2W8P1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8P1_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.470e-43 Identity = 86/147 (58.50%), Postives = 111/147 (75.51%), Query Frame = 1
Query: 1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALP-EELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDD 438
VV+ SNFT+ALD+ A+A +GW ++RLDG T +ERQ+LVDR NR +P + LFLF LS+ AGGVGLNLVGA+R+VLFD+DWNPA D Q MARVWR GQ++ V +YRLL TGT+EE ++QRQ+ K L + D+ PS R QD+
Sbjct: 594 VVLVSNFTTALDLFEAMADHHGWQYVRLDGSTPQQERQALVDRCNRRVPGDNLFLFLLSSHAGGVGLNLVGASRLVLFDTDWNPAVDKQVMARVWRNGQRRPVFIYRLLCTGTIEEKMYQRQLSKDELSCAVEDAGGPSQGRFSQDE 740
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A2R6WFC2_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WFC2_MARPO) HSP 1 Score: 169 bits (429), Expect = 1.730e-43 Identity = 99/210 (47.14%), Postives = 121/210 (57.62%), Query Frame = 1
Query: 1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRR 630
+VV SNFT LD++ ++ W +LRLDG T ERQS VDRFN EE +F LS+KAGG GLNL+GANR+VLFD DWNPATD QAMARVWR GQ+K V +YRLL+TG+LEE I+QRQI K + + + E H G R FS +ELRELF L+ +T CDTYD L +
Sbjct: 486 IVVVSNFTQTLDIIQSLCEQEKWKWLRLDGTTEVSERQSKVDRFNSDYSEER-IFLLSSKAGGTGLNLIGANRLVLFDPDWNPATDAQAMARVWRDGQRKPVLIYRLLSTGSLEEKIYQRQIMKQEIAAAVGEQVEGQ--------LGHAG-------------------------------RHFSREELRELFTLRLDTRCDTYDLLTK 655
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A7S1FQD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQD2_9STRA) HSP 1 Score: 162 bits (409), Expect = 5.130e-43 Identity = 98/218 (44.95%), Postives = 126/218 (57.80%), Query Frame = 1
Query: 1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRE-TPCDTYDKLRRGQGGPDG 651
VVVSSNFTS LD+L GW F RLDG T S++RQ +VD FNR E+ F F LSA+AGG GLNLVGA+R++++D DWNPATD Q MAR++R GQ K ++YRL TTGT+EE ++QRQI KG L + + S T G S + GG++S F+ +E+++ F LK E DT KL G G DG
Sbjct: 135 VVVSSNFTSVLDILARHLEMRGWTFQRLDGSTCSEKRQEMVDVFNRTSAEQNFCFLLSARAGGCGLNLVGASRLIMYDPDWNPATDLQTMARIYRTGQTKPTTIYRLFTTGTVEEIVYQRQIQKGNLASAVSEKTVAS------------------------TNGGSGN--------GGRSSSSFTAEEIKDCFDLKDEDVKSDTQRKL--GWGDYDG 318
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A383VN37_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VN37_TETOB) HSP 1 Score: 167 bits (423), Expect = 1.120e-42 Identity = 99/221 (44.80%), Postives = 132/221 (59.73%), Query Frame = 1
Query: 1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNE-PSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRG---------FSHDELRELFVLKRETPCDTYDKLRRG 633
VV+ SN+T LD+ A+ G+ LRLDG T+ +RQ LV + N A ++F+F LS+KAGG GLNLVGANR++LFD DWNPATD QA ARVWR GQ+K+V +YRLLT GT+EE +FQRQI K L ++ + P + Q G G A + G+GGGK+++G S +ELRELF L+ + DTY+ +R G
Sbjct: 547 VVIVSNYTQTLDLFAALCRQRGYVHLRLDGSTSITKRQKLVGQLN-APGSKVFVFLLSSKAGGCGLNLVGANRLILFDPDWNPATDKQAAARVWRDGQRKRVYVYRLLTAGTIEEKVFQRQISKEGLQQVVDAAAAAPGALGAAQGQGASAGEGLAAE---------------DGGKGGGKSNQGGQGASSMSLMSAEELRELFSLRPDVASDTYEVIRGG 751
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A7S4K0Z8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0Z8_9STRA) HSP 1 Score: 164 bits (415), Expect = 4.570e-42 Identity = 96/215 (44.65%), Postives = 123/215 (57.21%), Query Frame = 1
Query: 1 VVVSSNFTSALDVL-GAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRRGQGG 642
+V+ SN+TSAL ++ + G+ +RLDG T RQSLVD FNR+ E F+F LS+KAGG GLNLVGANR+V+FD DWNPATD QAMARV+R GQ K +YRL TTGT+EE I+QRQ+ K L L D S + +GRGG GF+ +ELR+ F LK + CDT +K+ R + G
Sbjct: 417 IVIVSNYTSALSIIESTLLKPRGYNSVRLDGSTEGNARQSLVDTFNRSSAERQFVFLLSSKAGGCGLNLVGANRLVMFDPDWNPATDMQAMARVYRQGQTKPSYIYRLFTTGTVEEVIYQRQVQKNNLATLTVDGGGASKK---------------------------------SGRGG---RAGFTEEELRDCFTLKEDIDCDTRNKIGRARWG 595
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A0L0FQD1_9EUKA (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQD1_9EUKA) HSP 1 Score: 153 bits (387), Expect = 1.040e-41 Identity = 83/147 (56.46%), Postives = 101/147 (68.71%), Query Frame = 1
Query: 1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPE-ELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDD 438
VV+ SN+T LD+ + G + F+RLDG + K+RQ LVD+FN PE FLF LS+KAGG GLNL+GANR+VLFD DWNPATD QAMARVWR GQKK +YRL++TG++EE IFQRQ K AL + D E R DD
Sbjct: 1 VVLVSNYTQTLDLFEQMCGTRRYQFIRLDGSLSIKKRQKLVDQFND--PEGTTFLFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDLQAMARVWRDGQKKTCFIYRLVSTGSIEEKIFQRQAHKQALSSCVVDEEEDVQRHFAMDD 145 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9095.16926.1 >prot_H-paniculata_contig9095.16926.1 ID=prot_H-paniculata_contig9095.16926.1|Name=mRNA_H-paniculata_contig9095.16926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=319bp VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEback to top mRNA from alignment at H-paniculata_contig9095:7334..9564- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9095.16926.1 ID=mRNA_H-paniculata_contig9095.16926.1|Name=mRNA_H-paniculata_contig9095.16926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2231bp|location=Sequence derived from alignment at H-paniculata_contig9095:7334..9564- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9095:7334..9564- >mRNA_H-paniculata_contig9095.16926.1 ID=mRNA_H-paniculata_contig9095.16926.1|Name=mRNA_H-paniculata_contig9095.16926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at H-paniculata_contig9095:7334..9564- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |