mRNA_H-paniculata_contig9086.16922.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9086.16922.1
Unique NamemRNA_H-paniculata_contig9086.16922.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9086.16922.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.160e-39
Identity = 83/173 (47.98%), Postives = 114/173 (65.90%), Query Frame = 1 
Query:  148 RVSPTMQHGAHGDDDSSGGCLGCGSFCGQFCALVRKNALTKRRSKCQLVVELLFPALITLLIGLIKSSLTVDVFGEVVPVTDTPVPTYGELESSLSYPNVLCYDNNMFHRCACHEDEDTVTSPSAYLSGVGVNITGQAMWSTLHLEDSYYHFCSQAAQVLTYASTASTGDPAC 666
            RVSP+      GD D +       SF  QF ALVRKN L+KRR+K QL +ELL PA+I LL+G IK+++   V  E VP +DTPV TYG +++  ++PNVLC+DNNMF RC CH DED  ++P  YL+G+GV+ TG AMW+T H  ++   FC+ A   L+ +S+ ++   AC
Sbjct:    6 RVSPSA---GDGDTDHAA------SFLRQFGALVRKNFLSKRRAKLQLALELLCPAMIMLLVGSIKNTIVSQVTEETVPTSDTPVATYGAMQNISTFPNVLCFDNNMFMRCDCHLDEDAYSAPGIYLTGLGVDTTGVAMWATQHDANTLIAFCTAAVSALSGSSSNTSPTDAC 169
[Close]
BLAST of mRNA_H-paniculata_contig9086.16922.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.390e-38
Identity = 74/134 (55.22%), Postives = 89/134 (66.42%), Query Frame = 1 
Query:  214 CGSFCGQFCALVRKNALTKRRSKCQLVVELLFPALITLLIGLIKSSLTVDVFGEVVPVTDTPVPTYGELESSLSYPNVLCYDNNMFHRCACHEDEDTVTSPSAYLSGVGVNITGQAMWSTLHLEDSYYHFCSQA 615
            CG FC QF ALVRKN LTKRRSK QL +EL+ PALI LLIG+IK+S++        P TDTPV TY  L+++   PNVLCYDNN+FHRC CH   D    P +YLSG G+  TG A+W+T H  D+    C  A
Sbjct:    3 CGDFCRQFGALVRKNFLTKRRSKLQLAIELIVPALIMLLIGVIKNSISPKELPAGTPATDTPVVTYEALQNTTLSPNVLCYDNNVFHRCGCHRSTDDYEPPESYLSGAGIAFTGAAIWATQHDSDTLVSHCELA 136
[Close]
BLAST of mRNA_H-paniculata_contig9086.16922.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.750e-24
Identity = 66/156 (42.31%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:  190 DSSGGCLGCGSFCGQFCALVRKNALTKRRSKCQLVVELLFPALITLLIGLIKSSLTVDVFGEVVPVTDTPVPTYGELESSLSYPNVLCYDNNMFHRCACHEDEDTVTSPSAYLSGVGVNITGQAMWSTLHLEDSYYHFCSQAAQVLTYASTASTGD 657
            D+S G     S   QFC L+RKN L  RR+   L++EL  PAL   L+GLIK       +   +P  DTPVPT+ +L++  S+PNVLCYDNN+F RC C  D   V  PS Y+SG+ V  T  AMW + H   +  + CS  A +    S+ S  D
Sbjct:    6 DASDGSTFSKSSWRQFCVLLRKNFLVTRRTPFSLLIELAVPALFLYLMGLIKGDSKPTRYEGDIPFADTPVPTFEDLQTFASHPNVLCYDNNIFFRCNC--DNYGVGFPSDYISGLPVTNTSLAMWGSGHALSTLAYVCSGLASLGGNFSSLSATD 159
[Close]
BLAST of mRNA_H-paniculata_contig9086.16922.1 vs. uniprot
Match: D8LFQ4_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ4_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.380e-22
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:  295 VELLFPALITLLIGLIKSSLTVDVFGEVVPVTDTPVPTYGELESSLSYPNVLCYDNNMFHRCACHEDEDTVTSPSAYLSGVGVNITGQAMWSTLHLEDSYYHFCSQA 615
            +EL+ PAL+ LLIG+IK+S++        P TDTPV TY  L+++   PNVLCYDNN+FHRC CH   D    P +Y+SG  +  T  A+W+T H  D+    C  A
Sbjct:   20 IELIVPALVMLLIGVIKNSISPKELPAGTPATDTPVVTYEALQNTTVSPNVLCYDNNVFHRCGCHRSTDDYEPPESYVSGAAITFTAAAIWATQHDSDTLLSHCQLA 126
[Close]
BLAST of mRNA_H-paniculata_contig9086.16922.1 vs. uniprot
Match: A0A6H5JSK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK1_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.860e-9
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  292 VVELLFPALITLLIGLIKSSLTVDVFGEVVPVTDTPVPTYGELESSLSYPNVLCYDNNMFHR 477
            ++EL  PAL   L+GLIK       +   +P  DTPVPT+ +L++  S+PNVLCYDNN+F R
Sbjct:    9 LIELAVPALFLYLMGLIKGDSEPTRYEGDIPFADTPVPTFEDLQTFASHPNVLCYDNNIFFR 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9086.16922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZE9_ECTSI1.160e-3947.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZE8_ECTSI6.390e-3855.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZA6_ECTSI3.750e-2442.31ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ect... [more]
D8LFQ4_ECTSI1.380e-2245.79ABC transporter domain-containing protein n=1 Tax=... [more]
A0A6H5JSK1_9PHAE2.860e-948.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9086contigH-paniculata_contig9086:3005..9308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue1.7e-35
Seed eggNOG ortholog2880.D7FZE9
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons4
Model size677
Cds size537
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9086.16922.1prot_H-paniculata_contig9086.16922.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9086 3143..9308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.2444444-UTR-H-paniculata_contig9086:3004..31421622931133.2444444-UTR-H-paniculata_contig9086:3004..3142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9086 3005..3142 +
1691481605.3237398-UTR-H-paniculata_contig9086:3004..31421691481605.3237398-UTR-H-paniculata_contig9086:3004..3142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9086 3005..3142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.2610602-CDS-H-paniculata_contig9086:3142..32951622931133.2610602-CDS-H-paniculata_contig9086:3142..3295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9086 3143..3295 +
1691481605.3452654-CDS-H-paniculata_contig9086:3142..32951691481605.3452654-CDS-H-paniculata_contig9086:3142..3295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9086 3143..3295 +
1622931133.2776518-CDS-H-paniculata_contig9086:4120..43051622931133.2776518-CDS-H-paniculata_contig9086:4120..4305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9086 4121..4305 +
1691481605.3562539-CDS-H-paniculata_contig9086:4120..43051691481605.3562539-CDS-H-paniculata_contig9086:4120..4305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9086 4121..4305 +
1622931133.289174-CDS-H-paniculata_contig9086:7967..80491622931133.289174-CDS-H-paniculata_contig9086:7967..8049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9086 7968..8049 +
1691481605.3651004-CDS-H-paniculata_contig9086:7967..80491691481605.3651004-CDS-H-paniculata_contig9086:7967..8049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9086 7968..8049 +
1622931133.3037367-CDS-H-paniculata_contig9086:9191..93081622931133.3037367-CDS-H-paniculata_contig9086:9191..9308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9086 9192..9308 +
1691481605.374584-CDS-H-paniculata_contig9086:9191..93081691481605.374584-CDS-H-paniculata_contig9086:9191..9308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9086 9192..9308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9086.16922.1

>prot_H-paniculata_contig9086.16922.1 ID=prot_H-paniculata_contig9086.16922.1|Name=mRNA_H-paniculata_contig9086.16922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MESRVSPTMQHGAHGDDDSSGGCLGCGSFCGQFCALVRKNALTKRRSKCQ
LVVELLFPALITLLIGLIKSSLTVDVFGEVVPVTDTPVPTYGELESSLSY
PNVLCYDNNMFHRCACHEDEDTVTSPSAYLSGVGVNITGQAMWSTLHLED
SYYHFCSQAAQVLTYASTASTGDPACYLT
back to top

mRNA from alignment at H-paniculata_contig9086:3005..9308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9086.16922.1 ID=mRNA_H-paniculata_contig9086.16922.1|Name=mRNA_H-paniculata_contig9086.16922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6304bp|location=Sequence derived from alignment at H-paniculata_contig9086:3005..9308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTAAACCACTACCCCGATCCCTACATTAATATTTTGTCACGCAGGGTG
TCTATCCTGTCTCCCATCCGCGGTGCAATTGCAGACGTCAATAAACAGCG
ACCTGTTCTCCTGAAAGGTTGAGCCAATCCGTTGGAATATGGAGAGTCGA
GTCTCGCCTACCATGCAACATGGAGCACACGGTGATGATGACAGCTCTGG
GGGTTGCCTTGGCTGCGGCTCGTTCTGCGGCCAGTTCTGTGCTCTCGTGC
GCAAGAATGCCCTCACGAAGCGAAGATCAAAATGCCAGCTGGTGAGTTGA
TAGGCTTGGGTATATTGCGTTCCTCTGCTGTGCTTGATGTGTGTTCGTTT
GTGCAGTTGTGTGTAGGAGAACAGAAATACATCCAAACCCGTTACAGTCA
GTATAGACGCACTACAATACGAATGACTACAGGCATCTTGAGGAGTTGAG
GCCAAAGTTGGACGAAACGCAATTATCCTGCAGCAGATGACTAGTTGAGA
TGGGTTGTCGCAACATCATGAGGACCTTTGCTGGTTGGCTGTGCATGCTC
AAATATCCATCTGAGTATCGTGTACACAGACGACGTGAGATAGATGGTCT
GGGAATGTTGCAGGTCAGAGAGAGGTGTGGTGAGCGAGTGATTTTGGCCA
AGATTTTCAACAGGAGCAAGATAGAAGAATAGAATACAAATAGAGACGAA
TAAATTTGCCAAGCCTCTGCTGTTCAAGTTTTGAAACTGCCTCTAATTAT
GTTGCCTTATTTTGCTCAACAACCTCACTAGCACACGCCCACGCTTGAGC
GGACGCATCGACTACACTTGTGAAATTGGATTCTATTATCTATGCCCCTT
ATTGGTCTTGAAATCGTTGATGAGGTCACAATGGACAATTAAATGAATTA
GTCGTCCAGATGCCCATAAAAAACCAACAGGTTTAGGCGGTTGGAACACT
GGACTGAACTATCTCCACTACAGTATATGTCATGAGATCGCCAACGACAG
GAGAACCCCTTCACCCCCCGCTGCCAACCCTCTCTGCCTTCCCTTCTCGC
TTTGCTCTGTTTTGCGATTGTTGTGTTCGCACATGGTGGATGTCGTGGCA
TTATCCACAAATGTAGGTTGTGGAATTGCTGTTTCCAGCATTGATAACGT
TGCTCATCGGTTTGATCAAGAGCAGTCTTACAGTTGATGTGTTCGGCGAG
GTGGTGCCTGTGACCGACACGCCGGTACCCACATATGGCGAATTGGAGAG
CAGCCTGAGTTATCCTAATGTGCTCTGCTACGACAACAACATGTTCCACA
GGTGAATTGCAATGGGTGGTCGCATGGTGCAGCAGGCACAGACAGATCGA
CTAGTGTCTAGAGTTGTTAGCGATTTGGGTAGTCAATGATTCCTGTTCCA
CACATGGAACATATGCCCCCATCGTGTCATGGGCGTCTCCCCTTTATTTT
ATGGTCGATGCTGCCAGCGTGGTGCTTTTCAAGGGGTTGACACAACAGTG
GTTTGTGACAATGGCAGCGGCGGTAAAACTTGGATCGAGTTAGCAACGAA
AGAGAGTGTGTTCAAAATCTGTTGTGTTGTCATGTGGTTCTCTTCGAATT
TGAGCTACATCATTGTATGTCTGTTTGCATCGTCTTGTGGTTGTAGCGCC
AAATTAAAAAGCCGGTAATTGAAACCCTGCAATCAGGGATGACGTTGGAG
ATTTATGTCGAATCTCCACATATGCCATGCGGAGTCAGTTTTGTGACTGA
AAATTCTCAATACTGGGCTACACTTAAACCAGCTTTGCATAGTGCAGTAT
TTCATTTATCGCCCCAAGGCCAGAGACTAGGGCGCCGGACTAACTACTGA
TGCTTGCCGACACAATCGACGAGCCAAATATTATTCCCAAAAAATGCGTT
CCACAATGTAAATATGGAGTTCCCGACAATCGTGTAGGCACGCATTCCGG
TGTGCGTCCTGCGCCCTGGTCTGACATATTTGGTGTATCCAGGTCCTTTC
AACATTCCACTTTTATGCCGTGTCTCCATATACGGCCTGTTAGCGGCTAC
TACGGGGATAATTTGGTGCAAATTGTAATATTCGGAGATGACAGGGCTCA
TGTCATATTATCCTTGAACTTCCTGCGCGTGTTGCTCACACAATAGCAGA
AGCAGTGATCCTTGTTCGAATTTGTACAAGCTGGGCGGGCCAAGAAAGAA
ATTATGCAGTCATCGTATCCTCCACGGCGCAGTTTTTGAGGTGAATCGCA
GTAGTTGAGAAGATACGATCGTCAAAAACAATTTGGGTATCTTGGTCGCC
CCCCAGCTTGTAGTTCATACCTAGTCAGAAGTCATGATGGTAGACAACAA
TGCGGGAAAATATAAACGTCAACAAAAGCGTACTCTGAACTTTTGTTATT
TTGACGTCCCTACTACTGATGGTATATACCTCAATCGGCCATTGCCGTCC
CAATTCTTCTGTTTTTCAACATTTACCTATTCGGGGCTTTAGGGCCGTAA
AAATGCGAAAACAATCCATGCTCAACTTTTTCCTTTTTACGGAATAACCA
AGGAGACTGGAAAAATACCGATTTATTGTTCAGAAAATTAAATATAGATA
AATGAACAGCAAGAGCTTCACTACGCGCCTTTTGGCGCAATTAGGGATGG
AGGTCGTCGCCCATATTTGTGTCTGCGTCAGCTCGGCGGGTGTTTTTATA
CTCGGTAAGGTGGCGTGCAGGCGTTGGGGGCCCGGGGTAATCCCTGCGAA
AGCTGCCAGATTTGACCATGGGGCCCTAAATTAGGGAAAATCTGTGCTGG
CGACACAGGTCTGTGCCAGCGACATCAATTTTGATGCTTGCTATCTTCTT
TCACAGTGCGAAGCATGACGCTTCGCAGCTCTTTCAAACGCACCCCATGT
TGACGGGTCACTCTCACTCGATATCGAGTTGGACGTTCTTTGCGGTGGTT
AACAACAGCTGTAGCTTCTCTTGGAAATAGTTTGCAGGTTTTCATGTTCG
TACTCCATACATCAGAGTATGAGCGTCCGTTTCGTTATTTTCCATTTTTT
TTTTTTCTTATGGATAAGAGGGCGTTTCGACATTCGAGAAGATTTGCGCA
TCGGTATTACCGAGATGTTCACGAAATATATATATATATATTTTTTAAAT
CGTTCCACATGATAACACATGTGGAGGAGGAAATCACGTCCGAGGCTACC
GTTCGGGCTATGAAGCGTTGTTTTGGACGCAGTGCAACCCTTGCGAATAT
TTTATTTGGAACAACGATTGAAGGTTGTCTTTTGTCTCGTTTTACCGGGG
GAGTTTTGTTATTTTTACTATCGCATCTTCTCTCCGAACGTTTGGACACA
GCAGAGGCAGCGAAAACAAAAGCATTTTCGTTTCCATATTAGTGCGGTGT
CTTGACAAAACTGAAAGAGATACACAAGAAGCAGGGCCGTGATTGGCAAG
TTGTCGAGCCGTAGGTTTGGGAAGAAAAATTAGCACTGTTCACGCATATG
TTGCTTTTCGTGTTTCTTTTTACTATTCATGTCAAGTTGTGTGAAGCCTG
TTTAGTAACGATCGGTGTCACGGGTAAAACAAGTGTGATATGATATGTGA
CGTGTGATGTGTGATGTGTTGACAAAAAAAAAAGGGAAGTGTGATGTCAT
GTAGTGAAATGTCACAGGATATCACATGATGTATGTGACATTTGCCTCGT
GATATTGCGTGCTATGATATCCTTGTACGGGGGGCTACAATAGATTACTC
TAAATTTCAGCAATTTTTTTGCTAAAAAAATCACGTTTGTTACATATGAT
GCTTGTCTTATCTTCTACGACCTTGTGCAGCGCGCACTACAAGCGCGTGC
AAACCAGCACTACAGAATTTTTTTTCGGAGTTTTACAGGGGTTTTTTTCG
CGGCGAGTTTTTATAACCAAATTGTAGAACCGGTTCCTGTAAGAACTTTG
GAATCTGACACGAATTTTGATAATATAGAAATTTTCGGAATTCGCTGCCG
TTGACATGACATGAACACTCAAAGGTGGTGTGTGTGCACAGCAAGCATCA
AATGCACAGCGGACAGTTCTGCACCAGATGGTGTGGTATTGTTGTATTCT
CTTGTGTGCTCTTTTGCTTAGAGTTTTCAACCGGTTTGTCCCATTGTTGA
TGGCGCACTGTACGTACAGTACAAGACTGCTCCTTGTACTTGCGGCGAGC
TACAGTTGGAATACTAAACTCAACTAAATACAGTACAGCACGGTGCCGCT
GGTTGGATTTCTTCGCCGAGTGCCGTGCTGCGTGTTGTCGCCGCGCTATT
GGTCTACTACGCTGTGCGCGGTGGGCTTCTGTTTCGTACGGCAGAGTATT
GTTGTGACGTCGCTTTAATTGCATCGTGCTGCAGCGGTGCTGTGTGATTG
ATGAATGGATGAATATACCGCGCCAGAGGTCAATCATTCATCTTTTTTAT
TTCGTTTACTGCCAGTTTAAATTTTCATTTCCTTGACAGTACGCCGTCTA
AATTGCACTCATTTTCGGTCATCCTTTGATATTATTCTTGATCACTTATC
CACCAATGAGAGGGCTGCAACGTTCAATTTTGACACGAGCCGCTTTGCTG
AAACCCAACGGAGCATAGTGGGCTGCTCGAAGCGGGGTCGTGTTACTTGT
CATGCCGTCCATTCGGAAGAGAACATAGATCTATTTCATGCTATGGGGAG
GTTCTAGTGAGGGTTTATTTTTGAGGGTGGGGATAGAGGAAAATGCCCCC
TCCCCTCCCCCTCCTCCTCATGAAGCTTTGTCAGGTTTTGGGGGGCATAT
GTGTTCGAAACTGAGAGTTACCAGATAATCTTCTGGTAGTTGCCACGAGT
TGTTCCATGTGAAACAAAAAAACAGTCATACCATGTGTTCATTATCCTCT
CCCCTCCCCTCTCGCTTTCTCCCTTGTGTGTATGTTGTTCTTATGGGGGT
ATTATACAAATAGGTGCGCGTGCCATGAAGATGAAGACACAGTCACAAGC
CCTTCCGCGTATTTGTCTGGAGTGGGCGTGAACATAACAGGCCAGGTGAC
TTGAGACAGACCAAACATGCTTGACCGCGAAAATGTACTGACGGAGCACG
GGCCGTGCCGTCGCGATCCATCCTCTTTTATCACTCACAGTACTACGGTT
AGAGTGATTCTTTCGAGCGGCGGACTTTTGTGTATCATGTTTCATTTAAA
TCGATTTTGGCAAGATATAGGGGTGGGAGACAGATCGACGTGTGTTCCGT
GTTTTCCCACTTGAACCAATGTGAAAATTCCCTTCTATCATGTGTCGTGA
GTAGTAGTTTAGGCATCATTTTTTACCTTAGTAAAAGTACTAACAATACA
TGCGTATCATTAAAAAAGAACTATTGTTAAAAGCAGCCTAGAAGGAAAAC
GTTTGTACAATGTCGAGACATTTTGCCAGGCTTAAAAGGGCTTCGCATAT
ATATATACCAAGTCTAAGTAGTTTATTTATGTTCCATGTGTACTTGTGGG
CTTGTGAGAAAGCTAAACTGAACTTGAATATATCCTGTATGAAGCGGCCG
ATACTGAGAAAAAACGAACGAATCAAGAAGCGGAACAAGCCATGGACTTT
TGCTTGCCCCGCTTTTGACCTCCCAAGACCAGGTGATTCGTTAAGCACCT
GGAATATAATCAAGGCCGTGGGTTGTGTGCACAATATCGTCGTTTTTTGC
TTTTCAAATCGAATATACAGTAGTCCGTCAAGGTTGCAGAAGTTCCTTCA
TCCACGTGTATCGCTCCCCCCCCCCCCCGGATGTTTGCTGGTGTGTGGGA
AGAACGGTCCTGATGTTCCTGAGGTCCATGTACCTCGGTCCGGACATGAC
TGCAGCCATTGAGGTTTCCAGTCTCGTGATTGAAAGTGCTTTCTATCTTG
GAAGATTTTACAATTAGTCATTGTATCTATATATTAGAAATTAGTGTTCG
ACGCCTCTAGAGTATGCAAAATGGCAAGGTCGTGATTCGGCGATTTTTTT
ATAAGGTCGTACTCTATTAATCTTCTAGAGTAGTAATTTTGAAATGGACA
CGCGGAAAAAAAAATGTTACTGTTATGGTCATTGTTGGATATAATCAACA
TCATGGCTTGCTTATTCATTTATTTCAATATATAACGTATACACTTGCGT
GCACTTTTTATTGTTGGATGTTAAAAAAAACCGAAAGGCCATGTGGTCTA
CGCTTCACCTGGAGGATAGCTATTACCATTTTTGCTCCCAGGCAGCGCAG
GTCCTGACGTACGCCAGCACAGCGTCAACAGGCGATCCTGCGTGCTACCT
CACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9086:3005..9308+

>mRNA_H-paniculata_contig9086.16922.1 ID=mRNA_H-paniculata_contig9086.16922.1|Name=mRNA_H-paniculata_contig9086.16922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig9086:3005..9308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAGTCGAGTCTCGCCTACCATGCAACATGGAGCACACGGTGATGA
TGACAGCTCTGGGGGTTGCCTTGGCTGCGGCTCGTTCTGCGGCCAGTTCT
GTGCTCTCGTGCGCAAGAATGCCCTCACGAAGCGAAGATCAAAATGCCAG
CTGATGGAGAGTCGAGTCTCGCCTACCATGCAACATGGAGCACACGGTGA
TGATGACAGCTCTGGGGGTTGCCTTGGCTGCGGCTCGTTCTGCGGCCAGT
TCTGTGCTCTCGTGCGCAAGAATGCCCTCACGAAGCGAAGATCAAAATGC
CAGCTGGTTGTGGAATTGCTGTTTCCAGCATTGATAACGTTGCTCATCGG
TTTGATCAAGAGCAGTCTTACAGTTGATGTGTTCGGCGAGGTGGTGCCTG
TGACCGACACGCCGGTACCCACATATGGCGAATTGGAGAGCAGCCTGAGT
TATCCTAATGTGCTCTGCTACGACAACAACATGTTCCACAGGTTGTGGAA
TTGCTGTTTCCAGCATTGATAACGTTGCTCATCGGTTTGATCAAGAGCAG
TCTTACAGTTGATGTGTTCGGCGAGGTGGTGCCTGTGACCGACACGCCGG
TACCCACATATGGCGAATTGGAGAGCAGCCTGAGTTATCCTAATGTGCTC
TGCTACGACAACAACATGTTCCACAGGTGCGCGTGCCATGAAGATGAAGA
CACAGTCACAAGCCCTTCCGCGTATTTGTCTGGAGTGGGCGTGAACATAA
CAGGCCAGGTGCGCGTGCCATGAAGATGAAGACACAGTCACAAGCCCTTC
CGCGTATTTGTCTGGAGTGGGCGTGAACATAACAGGCCAGGCCATGTGGT
CTACGCTTCACCTGGAGGATAGCTATTACCATTTTTGCTCCCAGGCAGCG
CAGGTCCTGACGTACGCCAGCACAGCGTCAACAGGCGATCCTGCGTGCTA
CCTCACCGCCATGTGGTCTACGCTTCACCTGGAGGATAGCTATTACCATT
TTTGCTCCCAGGCAGCGCAGGTCCTGACGTACGCCAGCACAGCGTCAACA
GGCGATCCTGCGTGCTACCTCACC
back to top