mRNA_H-paniculata_contig9075.16909.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9075.16909.1
Unique NamemRNA_H-paniculata_contig9075.16909.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: D7FYH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYH6_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 2.720e-74
Identity = 136/243 (55.97%), Postives = 162/243 (66.67%), Query Frame = 1 
Query:   76 MQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLV--------------ASACAPSIPKSQFSSLSRLDHDRLSAMLAEEI-SADLHDGVAAVTRADSNG----------RRQPSFAGKTTGFLE-----IRNVCLWGNHSPTMWPDVSMAEARIPG 714
            M GRVFGEGR+V LRLLDI+ C G L+G AMEI+DC  DL      VTEVV T+DP++AF+GAD  VLLGGFPRLPGMERRDLIAKNVPIMAEHG+ +A+CA   VRVLVVANPACTNCL+              A+  APSIP+S FSSL+RLD DRLSAMLAE + S +  +  +   R   +G          R+      +    L+     +R V +WGNHSPTMWPDVS AEA+I G
Sbjct:    1 MHGRVFGEGRKVRLRLLDIEACVGALQGFAMEIQDCNSDL------VTEVVATSDPEVAFKGADVAVLLGGFPRLPGMERRDLIAKNVPIMAEHGRALAKCAKDGVRVLVVANPACTNCLMVTERKISPVLMNDEAATSAPSIPRSHFSSLARLDQDRLSAMLAENLCSEETLEQTSGGARTPLSGDVSLPQQEPERQHAVRTRQDRNILQLEGPGVRGVYVWGNHSPTMWPDVSGAEAKIDG 237
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BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: D7FQW1_ECTSI (Malate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW1_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 4.420e-61
Identity = 113/231 (48.92%), Postives = 148/231 (64.07%), Query Frame = 1 
Query:   22 VAITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASACAPSIPKSQFSSLSRLDHDRLSAMLAEEISADLHDGVAAVTRADSNGRRQPSFAGKTTGFLEIRNVCLWGNHSPTMWPDVSMAEARIPG 714
            V +TGGAGQIAY+L+PLI +G VFG   RV+LRLLDI P A  LEGVAME++D     + F   +  ++ TTD   AF GA   +LLGGFPR PGMER DLI KN  IM   G  + + AS++ +V+VVANPA TNC+V ++ APSIP+   S LSRLDHDR++ ML  E +  L     A   A+ NG  +   + +  G  ++R +C+WGNHS +  PD S  E R+ G
Sbjct:   10 VVVTGGAGQIAYSLIPLIARGLVFGPRTRVNLRLLDIPPSASALEGVAMEVQD-----SLFSTALDGILATTDEAKAFDGAQVAILLGGFPRRPGMERGDLIEKNAGIMKRMGGCLEKHASRNCKVVVVANPAPTNCIVLASYAPSIPRKNISCLSRLDHDRMAGMLLHEANRCL-----AAAAANGNGSAKGG-SWQRLGPADVRGICVWGNHSNSQVPDASAVEFRVNG 229
[Close]
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: A0A097IUL1_9PHAE (Malate dehydrogenase n=1 Tax=Scytosiphon dotyi TaxID=180438 RepID=A0A097IUL1_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.530e-59
Identity = 114/234 (48.72%), Postives = 145/234 (61.97%), Query Frame = 1 
Query:   22 VAITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASACAPSIPKSQFSSLSRLDHDRLSAMLAEEISADLHDGVAAVTRADSNGRRQ---PSFAGKTTGFLEIRNVCLWGNHSPTMWPDVSMAEARIPG 714
            V +TGGAGQIAY+L+PLI +G VFG   RV+LRLLDI P A  LEGVAMEI+D     + F  ++  V+ TTD   AF+GA   +LLGGFPR PGMER DLI KN  IM   G+ +   AS++ +V+VVANPA TNC+V ++ APSIP+   S LSRLDHDR+  ML  E +  L +   +V      G           +  G  +IR VC+WGNHS +  PD S  E  + G
Sbjct:    9 VVVTGGAGQIAYSLIPLIARGLVFGAETRVNLRLLDIPPSAMALEGVAMEIQD-----SLFLTVLDGVIATTDEAKAFEGAQVAILLGGFPRRPGMERGDLIGKNAGIMKRMGEALERYASRNCKVVVVANPAPTNCIVLASHAPSIPRKNISCLSRLDHDRMVGMLLHEANRCLAEASGSVGNGTLGGVSDGXXXXXXXRRLGQADIRGVCVWGNHSNSQVPDASAVEFFVDG 237
[Close]
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: A0A097IUP6_SACJA (Malate dehydrogenase n=2 Tax=Saccharina TaxID=309357 RepID=A0A097IUP6_SACJA)

HSP 1 Score: 201 bits (510), Expect = 4.350e-59
Identity = 115/231 (49.78%), Postives = 143/231 (61.90%), Query Frame = 1 
Query:   22 VAITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASACAPSIPKSQFSSLSRLDHDRLSAMLAEEISADLHDGVAAVTRADSNGRRQPSFAGKTTGFLEIRNVCLWGNHSPTMWPDVSMAEARIPG 714
            V +TGGAGQIAY+L+PLI +G VFG G RVHLRLLDI P A  LEGVAME++D     + F  ++  V+ TTD   AF GA   +LLGGFPR PGMER DLI KN  IM   G+ +   A  + +V+VVANPA TNCLV S+ APS+ +   S LSRLDHDR+  ML  E +  L   V+A    D+  R       +  G  ++R  C+WGNHS +  PD S  E  I G
Sbjct:    6 VVVTGGAGQIAYSLVPLIARGLVFGPGVRVHLRLLDIPPAANALEGVAMEVQD-----SLFSTVLDGVLATTDEAQAFDGAQVAILLGGFPRRPGMERGDLIGKNASIMKRMGEALERYACHNCKVVVVANPAPTNCLVLSSHAPSLSRRNISCLSRLDHDRMVGMLLHEANRSLSAPVSA-GGGDAGAR-----GWRRLGPADVRGACVWGNHSNSQVPDASAVEFLIDG 225
[Close]
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: A0A097IUM7_UNDPI (Malate dehydrogenase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A097IUM7_UNDPI)

HSP 1 Score: 201 bits (510), Expect = 4.930e-59
Identity = 117/232 (50.43%), Postives = 146/232 (62.93%), Query Frame = 1 
Query:   28 ITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASACAPSIPKSQFSSLSRLDHDRLSAMLAEEISA--DLHDGVAAVTRADSNGRRQPSFAG---KTTGFLEIRNVCLWGNHSPTMWPDVSMAEARI 708
            +TGGAGQIAY+L+PLI +G VFG G RVHLRLLDI P A  L+GVAMEI+D     + F  ++  V+ TTD   AF+GA+  +LLGGFPR PGMER DLI KN  IM + G+ +   A    +V+VVANPA TNC+V S+ APSIP+   + LSRLDHDR+  ML  E +    L D  +A       G      AG   +  G  +IR  C+WGNHS +  PDVS AE  I
Sbjct:    8 VTGGAGQIAYSLIPLIARGLVFGPGVRVHLRLLDIPPAANALDGVAMEIQD-----SLFSTVLDGVLATTDEGKAFEGAEVAILLGGFPRRPGMERGDLIGKNAGIMKKMGQALERYADHGCKVVVVANPAPTNCVVLSSHAPSIPRKNITCLSRLDHDRMIGMLLAEANRLLSLQDDNSA------GGNXXXXXAGARERKLGPADIRGACVWGNHSNSQVPDVSSAELFI 228
[Close]
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: A0A097IUJ7_SCYLO (Malate dehydrogenase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A097IUJ7_SCYLO)

HSP 1 Score: 201 bits (511), Expect = 6.140e-59
Identity = 116/230 (50.43%), Postives = 144/230 (62.61%), Query Frame = 1 
Query:   22 VAITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASACAPSIPKSQFSSLSRLDHDRLSAMLAEEISADLHDGVAAVTRAD----SNGRRQPSFAGKTTGFLEIRNVCLWGNHSPTMWPDVSMAE 699
            V +TGGAGQIAY+L+PLI +G VFG   RV+LRLLDI P A  LEGVAMEI+D     + F  ++  VV TTD   AF+GA   +LLGGFPR PGMER DLI KN  IM   G+ +   A ++ +VLVVANPA TNC+V ++ APSIP+   S LSRLDHDR+  ML  E +  L +   +V        SNG        +  G  +IR VC+WGNHS +  PD S  E
Sbjct:    9 VVVTGGAGQIAYSLIPLIARGLVFGTDTRVNLRLLDIPPSATALEGVAMEIQD-----SLFLTVLDGVVATTDEAKAFEGAQVAILLGGFPRRPGMERGDLIGKNAGIMKRMGEALERYAGRNCKVLVVANPAPTNCIVLASHAPSIPRKNISCLSRLDHDRMVGMLLHEANRCLGEASGSVRNGTVDWVSNGGGGSC---RRLGPTDIRGVCVWGNHSNSQVPDASAVE 230
[Close]
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: A0A6H5KVV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV0_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 8.440e-59
Identity = 115/231 (49.78%), Postives = 148/231 (64.07%), Query Frame = 1 
Query:   22 VAITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASACAPSIPKSQFSSLSRLDHDRLSAMLAEEISADLHDGVAAVTRADSNGRRQPSFAGKTTGFLEIRNVCLWGNHSPTMWPDVSMAEARIPG 714
            V +TGGAGQIAY+L+PLI +G VFG   RV+LRLLDI P A  LEGVAME++D     + F   +  V+ TTD   AF GA   +LLGGFPR PGMER DLI KN  IM   G  + + AS++ +V+VVANPA TNC+V ++ APSIP+   S LSRLDHDR++ ML  E +  L     A   A+ NG  +   + +  G  ++R VC+WGNHS +  PD S  E R+ G
Sbjct:   10 VVVTGGAGQIAYSLIPLIARGLVFGPRTRVNLRLLDIPPSALALEGVAMEVQD-----SLFSTALDGVLATTDEAKAFDGAQVAILLGGFPRRPGMERGDLIEKNAGIMKRMGCCLEKYASRNCKVVVVANPAPTNCVVLASYAPSIPRKNISCLSRLDHDRMAGMLLHEANRCL-----AAAAANGNGSAKGG-SWQRLGPADVRGVCVWGNHSNSQVPDASAVEFRVNG 229
[Close]
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: H3G9V6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9V6_PHYRM)

HSP 1 Score: 197 bits (502), Expect = 1.320e-58
Identity = 108/231 (46.75%), Postives = 143/231 (61.90%), Query Frame = 1 
Query:   22 VAITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASACAPSIPKSQFSSLSRLDHDRLSAMLAEEISADLHDGVAAVTRADSNGRRQPSFAGKTTGFLEIRNVCLWGNHSPTMWPDVSMAEARIPG 714
            + ++G AGQIAY+LLPL+  G VFG  +RV LRLLDI P    LEGV ME++DC       F LV  ++ T D ++AF+ AD  +L+GGFPR  GM+R+DLI KNV I    G  I + AS++V+VLVVANPA TNCL+A   APSIP+  FS+L+RLDH+RL + L E+++A     V A                      ++  V +WGNHS T  PDV+ AE  +PG
Sbjct:    6 IVVSGAAGQIAYSLLPLLCIGHVFGPEQRVELRLLDIAPAQEALEGVKMELQDCA------FNLVDAIIPTADLEVAFKDADVAILVGGFPRKQGMQRKDLIEKNVAIFKAQGAAIEQFASRNVKVLVVANPANTNCLIAMENAPSIPRRNFSALTRLDHERLRSFLVEKVNATQSHKVTA---------------------KDVTKVVIWGNHSSTQVPDVTYAEVALPG 209
[Close]
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: A0A097IUK3_9PHAE (Malate dehydrogenase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUK3_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 4.480e-58
Identity = 113/231 (48.92%), Postives = 147/231 (63.64%), Query Frame = 1 
Query:   22 VAITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASACAPSIPKSQFSSLSRLDHDRLSAMLAEEISADLHDGVAAVTRADSNGRRQPSFAGKTTGFLEIRNVCLWGNHSPTMWPDVSMAEARIPG 714
            V +TGGAGQIAY+L+PLI +G VFG   RVHLRLLDI P A  LE + MEI+D     + F   +  V+ TTD   AF+GA   +LLGGFPR PGMER  L+AKNV IM   G+ +   AS+  + LVVANPA TNCLV +A APS+P+  FS LSRLDH+R+  ML E+ ++ L  G A  + A  + R +P+         ++R +C+WGNHS +  PD S  E  + G
Sbjct:    6 VVVTGGAGQIAYSLIPLIARGLVFGPATRVHLRLLDIPPAAQALEAIVMEIQD-----SLFPTALEGVLGTTDEVRAFEGAQVAILLGGFPRKPGMERGQLMAKNVGIMKRMGQLLERHASRDCKALVVANPAATNCLVLAANAPSLPRKNFSFLSRLDHERMVGMLLEKANSVLAAGTA--SHAVRSERLRPA---------DVRGLCIWGNHSDSQVPDASSVEFCLNG 220
[Close]
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Match: K3WQW7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQW7_GLOUD)

HSP 1 Score: 196 bits (498), Expect = 5.250e-58
Identity = 107/230 (46.52%), Postives = 140/230 (60.87%), Query Frame = 1 
Query:   22 VAITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGVLEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRLPGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASACAPSIPKSQFSSLSRLDHDRLSAMLAEEISADLHDGVAAVTRADSNGRRQPSFAGKTTGFLEIRNVCLWGNHSPTMWPDVSMAEARIP 711
            + ++G AGQIAY+LLPLI  G VFG  RRV LRLLDI      LEGV ME++DC       F LV E+  T+D ++AF+  D  +L+GGFPR  GM+R+DLI KNV I    G+ I + AS+ V+VLVVANPA TNCL+A   APSIP+  FS+L+RLDH+RL + L E ++A                      +G T    ++R   +WGNHS T  PDVS  +  +P
Sbjct:    7 IVVSGAAGQIAYSLLPLICIGHVFGPTRRVSLRLLDIPVAQEALEGVKMELQDCA------FNLVDEITPTSDLELAFKDVDVAILVGGFPRKQGMQRKDLIEKNVTIFKAQGEAIEKYASRDVKVLVVANPANTNCLIAMENAPSIPRHNFSALTRLDHERLRSFLVERVNA----------------------SGNTVTSKDVRKCIIWGNHSSTQVPDVSFVDVHVP 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9075.16909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYH6_ECTSI2.720e-7455.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FQW1_ECTSI4.420e-6148.92Malate dehydrogenase n=1 Tax=Ectocarpus siliculosu... [more]
A0A097IUL1_9PHAE2.530e-5948.72Malate dehydrogenase n=1 Tax=Scytosiphon dotyi Tax... [more]
A0A097IUP6_SACJA4.350e-5949.78Malate dehydrogenase n=2 Tax=Saccharina TaxID=3093... [more]
A0A097IUM7_UNDPI4.930e-5950.43Malate dehydrogenase n=1 Tax=Undaria pinnatifida T... [more]
A0A097IUJ7_SCYLO6.140e-5950.43Malate dehydrogenase n=1 Tax=Scytosiphon lomentari... [more]
A0A6H5KVV0_9PHAE8.440e-5949.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3G9V6_PHYRM1.320e-5846.75Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A097IUK3_9PHAE4.480e-5848.92Malate dehydrogenase n=1 Tax=Dictyopteris undulata... [more]
K3WQW7_GLOUD5.250e-5846.52Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9075contigH-paniculata_contig9075:213..6387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.7
Seed ortholog evalue1.8e-61
Seed eggNOG ortholog2880.D7FYH6
KEGG rclassRC00031
KEGG koko:K00025,ko:K00026
KEGG ReactionR00342,R07136
KEGG Pathwayko00020,ko00270,ko00620,ko00630,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04964,map00020,map00270,map00620,map00630,map00710,map01100,map01110,map01120,map01130,map01200,map04964
KEGG ModuleM00009,M00011,M00012,M00168,M00171
Hectar predicted targeting categoryother localisation
EggNOG free text desc.malate metabolic process
EggNOG OGsCOG0039@1,KOG1496@2759
Ec32 ortholog descriptionLactate/malate dehydrogenase, C-terminal
Ec32 orthologEc-00_004290.1
EC1.1.1.37
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons5
Model size714
Cds size714
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9075.16909.1prot_H-paniculata_contig9075.16909.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9075 213..6387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.9425328-CDS-H-paniculata_contig9075:212..4251622931131.9425328-CDS-H-paniculata_contig9075:212..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 213..425 +
1691481604.7840688-CDS-H-paniculata_contig9075:212..4251691481604.7840688-CDS-H-paniculata_contig9075:212..425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 213..425 +
1622931131.972091-CDS-H-paniculata_contig9075:1845..19351622931131.972091-CDS-H-paniculata_contig9075:1845..1935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 1846..1935 +
1691481604.797994-CDS-H-paniculata_contig9075:1845..19351691481604.797994-CDS-H-paniculata_contig9075:1845..1935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 1846..1935 +
1622931131.993862-CDS-H-paniculata_contig9075:2951..30861622931131.993862-CDS-H-paniculata_contig9075:2951..3086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 2952..3086 +
1691481604.8061156-CDS-H-paniculata_contig9075:2951..30861691481604.8061156-CDS-H-paniculata_contig9075:2951..3086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 2952..3086 +
1622931132.0125806-CDS-H-paniculata_contig9075:3951..40791622931132.0125806-CDS-H-paniculata_contig9075:3951..4079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 3952..4079 +
1691481604.813996-CDS-H-paniculata_contig9075:3951..40791691481604.813996-CDS-H-paniculata_contig9075:3951..4079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 3952..4079 +
1622931132.0311947-CDS-H-paniculata_contig9075:6239..63871622931132.0311947-CDS-H-paniculata_contig9075:6239..6387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 6240..6387 +
1691481604.821839-CDS-H-paniculata_contig9075:6239..63871691481604.821839-CDS-H-paniculata_contig9075:6239..6387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9075 6240..6387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9075.16909.1

>prot_H-paniculata_contig9075.16909.1 ID=prot_H-paniculata_contig9075.16909.1|Name=mRNA_H-paniculata_contig9075.16909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MDEDVVCVAITGGAGQIAYALLPLIMQGRVFGEGRRVHLRLLDIDPCAGV
LEGVAMEIRDCCCDLARFFRLVTEVVVTTDPKIAFQGADAVVLLGGFPRL
PGMERRDLIAKNVPIMAEHGKEIAECASKSVRVLVVANPACTNCLVASAC
APSIPKSQFSSLSRLDHDRLSAMLAEEISADLHDGVAAVTRADSNGRRQP
SFAGKTTGFLEIRNVCLWGNHSPTMWPDVSMAEARIPG
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mRNA from alignment at H-paniculata_contig9075:213..6387+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9075.16909.1 ID=mRNA_H-paniculata_contig9075.16909.1|Name=mRNA_H-paniculata_contig9075.16909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6175bp|location=Sequence derived from alignment at H-paniculata_contig9075:213..6387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGGACGTTGTGTGTGTTGCTATTACCGGCGGGGCGGGGCAGAT
AGCGTACGCTCTGTTGCCGCTGATAATGCAGGGGCGAGTGTTCGGCGAGG
GCCGTCGAGTGCACCTTCGGTTGCTGGACATAGACCCCTGCGCTGGGGTT
TTGGAGGGGGTCGCCATGGAGATTAGGGACTGCTGCTGCGACCTGGCAAG
ATTTTTCCGCTTAGTTTTTGTTGTCGTTATGGTCGTCATCTCATTAGAAC
CCCTGTCATTGCCATCATCCGTTCATCTCCATTTGTTGTGACACACGTTC
ATGTGTTATCCTTTGTTTACCACACTTCTAATGAAACACCTCCTCTATTA
GTCGTCATCCATTTACCACACAATTCGTTTCGCCGTGTTAGTTGGTCTAG
AGTAGATCCACCTTACGTTGTCGCTCTCGCGGCCTGGCCAGCTGTCAGTT
CTCGATGATCATGTAGAGTACACACTTCGTGCGTGTAGCGTGTGTCAAAC
AAGCCAATAAGTGAACACCGCTTTCCATGCCCGGTGAAAAGACGAGTCGT
TCTACGGCACCAAAGTCATGAGTATCAGTTTTGAGCATGACCACTGGCTG
CAGTACCCATGCATCTTGACCTCGTCAACTTTGTCATCAGGTAACTTCCT
ATCTTTCCTTTGCTAAGTGGTCATAATCTAGTCGCTTTCAACCCCAACTA
AAAGGTCCCTTGCGGGTAGGTCGGCATGTTGTCTTTTATCATGGGGAAGC
AGAACATGGCTTTCCCATATCCCTCCCTTGAACGGTGCGACGGTTCCGAA
TCGTGCTTTGTACACCTTTGGAGATGCGTGATCGCATGCCATTGAACGTA
CATCATTGAGGTTTTGAGTCAGGCGCTTCACGGTGGGCACTCGTTGGTCC
CCCCCCCCCCCCCCCTAATTTCTGAAGAGGAGACGATGAAGGGTAAGGAC
ATGACGAATTTAAGGAGGTTTAGCGAGTGCAACTGCGGTTTGGAAAGAAA
ATGGACTGAGAATAGAGGAAGGTTTGGAAGTATATCAAAGACTGGGTGAA
GGGATAGAGGGTTGAAGGGGTACCTACATGGACCATTTGATGCAGGCACA
CAGTTGAAAGTCAAATTTATGACCGGGGAACTTGACCTCAAGGTACGAAG
GAAGCGATGCAGGAAAGTAAACGAGAACGGCAACGACATGTTTGAGTGTG
ACTGCGGTAGTACGTGCGAGGACCGAGTCTACATAGTGGGAGAATACCCC
CTATATAAAAAAGAGAAGTAAATCTATATGAGTGAATGAGGGAAAATCGA
AGGATGCGATAGAGAGGCATTTGAATCCTGGGATTGCAAAAGAAGACTGC
AGCGGTTCCAGCAGACCGAACTTCGTCTGAACACGCGAGGGTTGAGATGG
ACAACGTAGGTAAAATATTTTTGAGTCACATTTAGCAAAGTGGTGAAGAG
CGATTGGCCATCGGAAATCGCTCTGGTAGGAACACTGCTCCGTCCTCCCG
GGGACGCGTAGTCAATGGTCAACACTTGCGATATTTTAAAGCATGAATAT
GCGCCACGCCCCCGCCTCCCTACCGTAGCCCTACTCAGGACGAAGCGCTC
TCTTTGTTGTTTCACTTCGTCGTGTATGCTCAGGTGACAGAAGTGGTAGT
TACCACAGACCCGAAGATCGCCTTTCAGGGGGCGGACGCTGTGGTACTGC
TTGGAGGCTTCCCGCGGCTACCGGTGTAGATTCACTACAAACTTGAAAAC
GGTTCATATTTTAGTCGCAGGGGGTCTGTCTGCCCGCTGCCAGAGATGTG
ATGTGTGTCGGGTGTTTTTTATATATGTCTGGTTTTTCTTCCCGAAACTT
TTGTCCTCTGACCACGGGCCTGGGAAATTGGACTGAACCAAGCATAGAGA
AACAAATCTCAATGTCCTCCCGCGTTTTGCTGTGCTGGTATGTGTTTCGT
TGCAATACCTATATTGCATCTCGTCGATTCTGTATCCCCTACCATGCCGT
AGCCAATTGGAAGATTGGAAGTGAAGGCTCCCATAGGCCCAGAAAACATC
CACGCACCTTCAAACGTGGCACGAGCGGCCGCGTTCCAAGGAGTTGCCAT
GGTTACCCCGTCGAACCCGATCTACACACCGGCCAATCCGCTCCTTGTCA
CGGGACCTTATTCCCGCCTTTATGCAAGATAATTAACAGATGTAATTTTC
CGAGAGAGTCCCTATTGCTTGCCGATGGTACAGTTGGTAAAGTTCGGTGC
GATGGACACCCTGTTGGAGGGATGCCGTACTTAGCATAGGTAAACCCGTA
ACCTGTAGGGTTTGGGTGTCACTGAGCCGTCTTTTTCACGTTTTGAACTA
CTTTCGGGAGTGCCTCGGCATAGTATCTTTTCCCCATTGAACAGTACGGT
CTCAAAGAATCGTGCTTTTTGCGCCGCTATAGATACATGAATGCACACCA
TCGAATAGGTTTGAATTTGTTTTGTTTTGAGAAATATCGAGCCGCTTTTC
GAAATATCCCTTCGTCAAAGAAGTGGCTTGAAATACCCCCGCCCCCTTAC
AGTAGCCCGACTCAAGAACAGAAAGGAATGATGAGGGATTGTCCATCGGC
AGGCAGGAAAAATGCTCCGTTCTCTGAAGGTTACGTGATCAACGATCTCC
CCTGCTGAGGCATGCGAAGCATGAGTACCCCCCGCCCCCTTCTCGTGCCG
TGTGTGTGCCACACGCTTCGGCTGCGGACTTCGTTCCAGGGCATGGAACG
ACGGGATCTGATAGCGAAGAACGTCCCCATTATGGCCGAGCATGGCAAAG
AAATTGCCGAGTGCGCCAGCAAGAGTGTGCGGGTGTTGGTCGTGGCGAAT
CCGGCATGCACCAACTGCCTCGTGGTAAGTAAGTGCCGCGCAGACCGAGG
GTACGGAGTTAAACTCGCGGCTAAGGAAGGGCCTTCGGTAACTGTTTGTG
ATTCAGGTTTACGATCGCAAATTCCAAATAAAGTAGTAATAGTAATAGTC
GGTGAAACGGATCTGCGCTCGCGAACGCCTTGTGGGCTGCATGACTACGA
CACGGTAGTGTATTGTACAGTCACGTCATGGTTTGGCGCGATTTTTTTAC
GCAAAAATATCGATTCTTTGGTGATGGCAAGCTGCAGCAAATTAGGCCGA
CCAAAGCGGCGCAGTTACCCACTCTCACGGGATGTTTTGGTGCACGGGTT
TTCACACACAAATCAATCATCTGGCTTATATTCGCGTGTGGGCCATACTC
TCGCGGATAGCGGGTAACAACCTATGGCTAGTACGGTAATACACGGAGTT
TTTGTGGGGGTAGTTCGGTACCAGGTCCTTTGTTGATATTTTGGGTGATG
TCAAAATACAATCTGTGTCTCCACTGCAGCAGAGCTTCGACGTAAAGTAT
GGTGGGATCTTAAAATTGTACCTGCTTTCGTGAAAGTTCGTGATATTTGG
GCTCCACTTGTTCGAGGCACGCGCACATATGTGGTGAACTGAGAAAGATT
AAATATATCTTGAGTCAGATATGGTACAGATTCCGCGACTTTAGATGTTC
CAAACAAAATATCAACCTCTAGCTGCGCGCCATCCCCGGCGTTATGCGAC
CTCGCGCTGTAGTAGGGTAGTTTTATCCACCGTCGGGTGTCAGCTTCTCT
TGTACACCCACATCTGCCGCCGTAATCGTACGCTACTTTTTTTCCCATTC
ATTCTTCGATTGTCATATGTACTAACTGTTTCGTTTCAGGCCTCGGCTTG
TGCCCCTTCAATACCCAAGAGCCAATTCTCAAGTCTCAGTCGTTTGGACC
ACGACCGTCTATCAGCGATGTTGGCGGAGGAAATTTCCGCGGATCTTCAC
GACGGCGTGGCTGCGGTGTCTCCAGTCCAAGTGAGGAAAGAGGGGGGAGG
TAAATCGATGCCGTGGTCTGTGTATTGCGTTGCGTGTGTGTGGTTGGTCC
CTCTCGATAGGTCTCGTAGGTTGCTTCTTTTTTGCTTGGATATAGATATT
AACTCTCGAGCCTTTTCACGTGGGATTTACAGTATATCCCGTGGTGGATT
TTCTGCGGTATTGTGCAGTATCACTGAATGGGGCATGGTCGTGTATATGG
TGCTGCCGGCGAGGTTGGAGATAAGCGTACAAAACGAAATGCCCGTGGTA
CAAACGGAAAATGTTTGAACCCCACGGATTCAATAGATCGATTCTGAGCG
GGAAAATGCCGCTACGAGATTGACATTTTCATGCAGGAGTACTACAACAT
ATGTACGTGTGTGCACGAGTGTCAACTGCCATTTGTTCCTTGTTCCGTAG
GATTCAGTTTCTAATTCGTCGAGAAATTCACTCTATTTTTGGAACAAGAT
ATTTGCTATGCTCTGTTTCATGGCGAACTTTTCGGTACCGCATAGGCAAC
CTGTAGCAAAAAAATCTCTACAATCATATATTATGACGTTGAACGCGACG
TGATTATCTGCTGCCATTCAATGAATCAATCAGAATGCAAGTCGGAGAAA
TCGGTGTTGTGATGCGTTAGTGTTACGGTATGCCCATTTTTCACCCCGCG
GGCGACCACGACCATTTGCGATTATTAAAAAACCGTTGCCTTAGCTTCAG
AATAAGCACTTTTTTCTATGTGCCGTCTACGACTGATCCAAATGCTGGTG
AAACGAAAAACAGGGGGTGAAATTTTTAACCTATGTGCCATAATCCATTC
CACATTCTGAAACTCAAGCGGTAGTTTTCCAAAATAGTCATCAGTAGTCG
TAGTCGTCCGGGGAGTGCCATTCTTATTGACTGTTTCTCGCCCGTTTTAT
CCCCCTCGCTGCCGCCCTTTCTCCTTGATGGATGTATGGTAACACACCAA
AGGTCATGCGGCCCCGAACTCATGTTGGTCAGATGCGCAGTCAGTATTTG
GTTACGAAACATGCGTATTCGGCAATTCTACTGGGACAAAAATAACCTAC
ATGTTTCTGACCATTCATTCCGTCTCCAAGACATGGCCGCGTTGCTGAAT
ATATATCTTGGACTATACAGCTTCGCCCTTGTACCATGCCCTACGTGCGA
TATCTTGAAGTGTCTCGTTTCGTACAACAGCATTACAGCGCAATCAATCC
TGTTCAAATACGGCTTGGACTCACCTGACCACACCCGCCACAGGTTCATG
CAAACACCTGTTTCGGAACCCCGCAAATAGGTACAGTATTTTTCGCGAAA
GCCTATCAAGTTTTCCCCCCCATTCTGCTTTTAAAAAAGGCTTAAAGCAC
TTTTTTTTTTTTTTTTTTTTCCAACTTTTTCGTTATCATATTTGATTTCG
TCACTTTGTCATGTCTTGATGATCGTACAATGGGTAGTTGAAACGTGGGG
AGACACTCTCACCCATAGCTATCGAAGTTTAAACAACACCATTCACGAGT
TCGTCTGGAGCCGCGCCAGCAAGTTGCAGGGGAGCGTAGGCAGTAGTTCA
CACGTCGGACGGATAAAGTTGGATCGTTCGCCGCTCGTATGGACTGACAT
GTGCGGGTAAATAGATCCGTCACCCCGCACATTGTTTTGCTCCTGCACGT
CTCATGTTTTGTCCATAACCAACCCGTCGGGGGCCGCCGGCTTCTTAAAT
ATGTATCCGTGACTTTCACCAGAAAAGAGACATGAGGGATCAGGCACACA
GGGGTTTACTTAGGGAAGAAAATCAAACCCTCGAATTAGCTGTGCAATAA
CCGTTCGGAAGGAAAAAGGAACGTGGGAGACAGGCAGGACGGGGGGCGGG
CGGGGGGGGATATGCAGGGTAGTTCTTGTCGTGATAATGTTGTGTAGCTT
GTACGTCAAAGTCGTCCATGTGCACTTCTCGACATCTGTTGGGTATACAG
GGGAGGGGAGGGAGGGTGGGGTGGGGTAGGGTAGCATCGTGACAATAGCG
CAACCATATATTCAGGGTGAAGTTATCCATGCTCCAACTCAATTCCGTCC
CAAGATTACGCAATATCTGTGACGTGTGCACTCTGAATACTGCAGGATGT
GGGACATCCTGACGTGCCGCATGAGAGCACTCGCGCGGACTCAAATGGCC
GGCGCCAGCCCTCTTTCGCAGGAAAGACAACGGGTTTTCTCGAGATTCGA
AACGTGTGCTTATGGGGCAATCACTCGCCCACAATGTGGCCGGACGTTTC
GATGGCAGAAGCGAGGATACCAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9075:213..6387+

>mRNA_H-paniculata_contig9075.16909.1 ID=mRNA_H-paniculata_contig9075.16909.1|Name=mRNA_H-paniculata_contig9075.16909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig9075:213..6387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGGACGTTGTGTGTGTTGCTATTACCGGCGGGGCGGGGCAGAT
AGCGTACGCTCTGTTGCCGCTGATAATGCAGGGGCGAGTGTTCGGCGAGG
GCCGTCGAGTGCACCTTCGGTTGCTGGACATAGACCCCTGCGCTGGGGTT
TTGGAGGGGGTCGCCATGGAGATTAGGGACTGCTGCTGCGACCTGGCAAG
ATTTTTCCGCTTAATGGATGAGGACGTTGTGTGTGTTGCTATTACCGGCG
GGGCGGGGCAGATAGCGTACGCTCTGTTGCCGCTGATAATGCAGGGGCGA
GTGTTCGGCGAGGGCCGTCGAGTGCACCTTCGGTTGCTGGACATAGACCC
CTGCGCTGGGGTTTTGGAGGGGGTCGCCATGGAGATTAGGGACTGCTGCT
GCGACCTGGCAAGATTTTTCCGCTTAGTGACAGAAGTGGTAGTTACCACA
GACCCGAAGATCGCCTTTCAGGGGGCGGACGCTGTGGTACTGCTTGGAGG
CTTCCCGCGGCTACCGGTGACAGAAGTGGTAGTTACCACAGACCCGAAGA
TCGCCTTTCAGGGGGCGGACGCTGTGGTACTGCTTGGAGGCTTCCCGCGG
CTACCGGGCATGGAACGACGGGATCTGATAGCGAAGAACGTCCCCATTAT
GGCCGAGCATGGCAAAGAAATTGCCGAGTGCGCCAGCAAGAGTGTGCGGG
TGTTGGTCGTGGCGAATCCGGCATGCACCAACTGCCTCGTGGGCATGGAA
CGACGGGATCTGATAGCGAAGAACGTCCCCATTATGGCCGAGCATGGCAA
AGAAATTGCCGAGTGCGCCAGCAAGAGTGTGCGGGTGTTGGTCGTGGCGA
ATCCGGCATGCACCAACTGCCTCGTGGCCTCGGCTTGTGCCCCTTCAATA
CCCAAGAGCCAATTCTCAAGTCTCAGTCGTTTGGACCACGACCGTCTATC
AGCGATGTTGGCGGAGGAAATTTCCGCGGATCTTCACGACGGCGTGGCTG
CGGTGCCTCGGCTTGTGCCCCTTCAATACCCAAGAGCCAATTCTCAAGTC
TCAGTCGTTTGGACCACGACCGTCTATCAGCGATGTTGGCGGAGGAAATT
TCCGCGGATCTTCACGACGGCGTGGCTGCGGTCACTCGCGCGGACTCAAA
TGGCCGGCGCCAGCCCTCTTTCGCAGGAAAGACAACGGGTTTTCTCGAGA
TTCGAAACGTGTGCTTATGGGGCAATCACTCGCCCACAATGTGGCCGGAC
GTTTCGATGGCAGAAGCGAGGATACCAGGGCACTCGCGCGGACTCAAATG
GCCGGCGCCAGCCCTCTTTCGCAGGAAAGACAACGGGTTTTCTCGAGATT
CGAAACGTGTGCTTATGGGGCAATCACTCGCCCACAATGTGGCCGGACGT
TTCGATGGCAGAAGCGAGGATACCAGGG
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