mRNA_H-paniculata_contig9073.16908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9073.16908.1
Unique NamemRNA_H-paniculata_contig9073.16908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9073.16908.1 vs. uniprot
Match: A0A6H5JLI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI6_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.270e-40
Identity = 131/379 (34.56%), Postives = 170/379 (44.85%), Query Frame = 1 
Query:   10 RECEVRVCQARHLTARNGAEYANKRDKRPQVTAMCVQVLITHDGRHVPTELCRNIESPYWQKIASFPL--------VLRDSVEEPEGISEESSGMKRHMEVEHENKEEQVMQ------------------------------------SLNPFA-------------KNFVPPESMPTQPAPPXXXXXR------PVMVDGPLRTSVVVHFHVLSDNLISRELIGDVAVDLVPILETADKKMSVLATDRLGHVEE------------NVQLAGLRADATIATDTWVPLRQTNGELRIQMLIKPESDGRASSAGFLTRPQ--GFLLPTAEFDMMAREGMVKVSVPASHGSLDKRLLEVQEQYDFSAARGYREGTPDQDAG 915
            R+CEVRVCQARHL  +      N  DK   + A  V  L++ DG H  TE CRNIE P W+++A F L        + R +  +P   S  ++G                                                      SLNPFA              NFVPP + P    PP     R      P      LR S+V+H  VL   L S+E++GDVAVDLVP+L +   +   LATDRL  +EE            +  +        +A DTWV LRQ   ELR+Q+L+K   +  +S+ G   R Q  G     A FD ++ +G+VK S+     SLD+RLLEVQE YDFSA  GYREG PD+D G
Sbjct:    6 RQCEVRVCQARHLVPKGRKR--NGDDKPAVLVADAVWALMSIDGVHNTTESCRNIEHPSWERVAVFDLNLCRAAEGIARGAPVKPPRDSNPTAGAXXXXXXXXXXXXXXXXXFERPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLNPFAVAEAETQXXXXFASNFVPPAATPLSSPPPQAASPRSKSSCPPAAAAWVLRASMVLHLRVLHGRLRSKEVLGDVAVDLVPLLRSGGDR---LATDRLEWLEEEDGAPLLPLGNGDAGVITTHPPPVVAVDTWVSLRQGTAELRVQILMKTPREPASSNVGS-QRAQVGGDEAWAAAFDALSADGLVKTSLDLEQRSLDERLLEVQETYDFSAGSGYREGKPDEDEG 378
[Close]
BLAST of mRNA_H-paniculata_contig9073.16908.1 vs. uniprot
Match: A0A836CAD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.180e-9
Identity = 74/268 (27.61%), Postives = 106/268 (39.55%), Query Frame = 1 
Query:  109 MCVQVLITHDGRHVPTELCRNIESPYWQKIASFPL---------VLRDSVEEPEGISEESSGMKRHMEVEHENKEEQVMQ-SLNPFAKNFVPPESMP-TQPAPPXXXXXRPVMVDGPLRTSVVVHFHVLSDNLISRELIGDVAVDLVPILETADKKMSVLATDRLG-------------------------------------HVEENVQLAGLRADAT--------IATDTWVPLRQTNGELRIQMLIKPE-SDGRASSAGFLTRPQ 741
            +CV   IT   +HV TE C +++ P W K+ASF                  EP   + E + M R M +     E    Q  L P +    PP +    Q              D   R   + H  V SD+L+S++L+G+V VD+  ++ T     ++L TDR+G                                     H  E V   G  A A         +A DTWV LRQ +GELR+Q+L++P+ S   A+ A  L R Q
Sbjct:   60 LCVS--ITLGDKHVLTEQCADLQRPVWDKVASFTYDPCPPPADAAAAPHEVEPSAAAVEMTDMFRAMGLPSRAAEPHDQQLPLEPHSGKPSPPAAAAGLQQLSASATAGAAPTADAHARRRAL-HLRVFSDSLVSKDLLGEVTVDVAALVATGG---ALLVTDRIGYTDSGGAGSRGEEDDGDSSGAFMVPLALAASPTPPRSHHSERVSANGAAAAAVASAVDFEPLAVDTWVALRQGDGELRVQVLVRPDPSAATAALAAALLRDQ 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9073.16908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLI6_9PHAE1.270e-4034.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAD2_9STRA6.180e-927.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9073contigH-paniculata_contig9073:8212..9402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size915
Cds size915
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.886238-CDS-H-paniculata_contig9073:8211..83631622931131.886238-CDS-H-paniculata_contig9073:8211..8363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 8212..8363 -
1691481604.7652128-CDS-H-paniculata_contig9073:8211..83631691481604.7652128-CDS-H-paniculata_contig9073:8211..8363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 8212..8363 -
1622931131.9004495-CDS-H-paniculata_contig9073:8639..94021622931131.9004495-CDS-H-paniculata_contig9073:8639..9402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 8640..9402 -
1691481604.7746527-CDS-H-paniculata_contig9073:8639..94021691481604.7746527-CDS-H-paniculata_contig9073:8639..9402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9073 8640..9402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9073.16908.1prot_H-paniculata_contig9073.16908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9073 8212..9402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9073.16908.1

>prot_H-paniculata_contig9073.16908.1 ID=prot_H-paniculata_contig9073.16908.1|Name=mRNA_H-paniculata_contig9073.16908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=305bp
MLYRECEVRVCQARHLTARNGAEYANKRDKRPQVTAMCVQVLITHDGRHV
PTELCRNIESPYWQKIASFPLVLRDSVEEPEGISEESSGMKRHMEVEHEN
KEEQVMQSLNPFAKNFVPPESMPTQPAPPPSPPPRPVMVDGPLRTSVVVH
FHVLSDNLISRELIGDVAVDLVPILETADKKMSVLATDRLGHVEENVQLA
GLRADATIATDTWVPLRQTNGELRIQMLIKPESDGRASSAGFLTRPQGFL
LPTAEFDMMAREGMVKVSVPASHGSLDKRLLEVQEQYDFSAARGYREGTP
DQDAG
back to top

mRNA from alignment at H-paniculata_contig9073:8212..9402-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9073.16908.1 ID=mRNA_H-paniculata_contig9073.16908.1|Name=mRNA_H-paniculata_contig9073.16908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1191bp|location=Sequence derived from alignment at H-paniculata_contig9073:8212..9402- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTACCGCGAGTGCGAGGTGCGGGTGTGCCAAGCCAGACACCTCAC
GGCTCGAAACGGCGCAGAGTATGCGAACAAGAGAGACAAGAGACCTCAGG
TGACAGCCATGTGTGTGCAAGTGCTCATCACGCACGACGGGCGGCATGTC
CCAACGGAGCTTTGCCGCAACATCGAGAGCCCATACTGGCAAAAAATCGC
GTCGTTCCCACTAGTCCTTCGCGATAGCGTCGAAGAACCAGAGGGGATAT
CGGAAGAGTCGTCCGGGATGAAGAGACATATGGAGGTTGAACATGAAAAT
AAAGAGGAACAGGTGATGCAATCACTTAATCCTTTTGCGAAGAATTTCGT
GCCGCCAGAGTCTATGCCGACACAACCTGCCCCACCGCCAAGCCCTCCTC
CGCGTCCTGTTATGGTGGATGGTCCTCTAAGGACGTCAGTGGTGGTCCAT
TTCCATGTGTTGAGCGATAATCTCATTTCTAGAGAGCTTATTGGGGATGT
AGCTGTTGACTTGGTGCCGATTCTGGAAACGGCGGACAAGAAGATGAGCG
TCCTAGCGACAGATCGGCTGGGCCATGTTGAGGAGAATGTTCAACTAGCA
GGCCTTCGTGCAGATGCGACTATCGCTACAGACACATGGGTTCCTCTTCG
CCAAACGAACGGGGAACTTCGAATACAGATGTTAATTAAGCCGGAGTCCG
ATGGGCGCGCGAGTAGTGCGGGATTCTTGACAAGGCCACAAGGGTTTCTA
CTGCCCACTGCTGGTGAAGTACAGCCAATAATACCCCGCGTATTGTCGAG
CGCGAACTTCAGAAGCCCATCCAAGGCCTTCGGGGCAGATCATCCTCGCG
CTCTACAGCCACGGCGTAACTCTGATGAGGAAATTCCTGGCCATGCTCAA
AATGTCAGCCAGGATATCAGAAGGCGACAGGGTGCCTCGCCTTACAGTAC
TAATATGTCGGGTCGAACGGCTGGTGAACCTCCCCCCGACCGAGCGTCTT
TTGGATATCTGAAATATGCTCCCATTGGCTTGTGGCCAGAATTTGATATG
ATGGCCAGGGAAGGAATGGTTAAGGTTAGTGTGCCGGCCTCTCATGGCTC
CCTCGACAAACGTCTGCTGGAAGTTCAAGAGCAGTACGACTTTAGTGCCG
CGCGTGGATACCGAGAGGGCACGCCAGATCAAGATGCCGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9073:8212..9402-

>mRNA_H-paniculata_contig9073.16908.1 ID=mRNA_H-paniculata_contig9073.16908.1|Name=mRNA_H-paniculata_contig9073.16908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at H-paniculata_contig9073:8212..9402- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTACCGCGAGTGCGAGGTGCGGGTGTGCCAAGCCAGACACCTCAC
GGCTCGAAACGGCGCAGAGTATGCGAACAAGAGAGACAAGAGACCTCAGG
TGACAGCCATGTGTGTGCAAGTGCTCATCACGCACGACGGGCGGCATGTC
CCAACGGAGCTTTGCCGCAACATCGAGAGCCCATACTGGCAAAAAATCGC
GTCGTTCCCACTAGTCCTTCGCGATAGCGTCGAAGAACCAGAGGGGATAT
CGGAAGAGTCGTCCGGGATGAAGAGACATATGGAGGTTGAACATGAAAAT
AAAGAGGAACAGGTGATGCAATCACTTAATCCTTTTGCGAAGAATTTCGT
GCCGCCAGAGTCTATGCCGACACAACCTGCCCCACCGCCAAGCCCTCCTC
CGCGTCCTGTTATGGTGGATGGTCCTCTAAGGACGTCAGTGGTGGTCCAT
TTCCATGTGTTGAGCGATAATCTCATTTCTAGAGAGCTTATTGGGGATGT
AGCTGTTGACTTGGTGCCGATTCTGGAAACGGCGGACAAGAAGATGAGCG
TCCTAGCGACAGATCGGCTGGGCCATGTTGAGGAGAATGTTCAACTAGCA
GGCCTTCGTGCAGATGCGACTATCGCTACAGACACATGGGTTCCTCTTCG
CCAAACGAACGGGGAACTTCGAATACAGATGTTAATTAAGCCGGAGTCCG
ATGGGCGCGCGAGTAGTGCGGGATTCTTGACAAGGCCACAAGGGTTTCTA
CTGCCCACTGCTGATGCTGTACCGCGAGTGCGAGGTGCGGGTGTGCCAAG
CCAGACACCTCACGGCTCGAAACGGCGCAGAGTATGCGAACAAGAGAGAC
AAGAGACCTCAGGTGACAGCCATGTGTGTGCAAGTGCTCATCACGCACGA
CGGGCGGCATGTCCCAACGGAGCTTTGCCGCAACATCGAGAGCCCATACT
GGCAAAAAATCGCGTCGTTCCCACTAGTCCTTCGCGATAGCGTCGAAGAA
CCAGAGGGGATATCGGAAGAGTCGTCCGGGATGAAGAGACATATGGAGGT
TGAACATGAAAATAAAGAGGAACAGGTGATGCAATCACTTAATCCTTTTG
CGAAGAATTTCGTGCCGCCAGAGTCTATGCCGACACAACCTGCCCCACCG
CCAAGCCCTCCTCCGCGTCCTGTTATGGTGGATGGTCCTCTAAGGACGTC
AGTGGTGGTCCATTTCCATGTGTTGAGCGATAATCTCATTTCTAGAGAGC
TTATTGGGGATGTAGCTGTTGACTTGGTGCCGATTCTGGAAACGGCGGAC
AAGAAGATGAGCGTCCTAGCGACAGATCGGCTGGGCCATGTTGAGGAGAA
TGTTCAACTAGCAGGCCTTCGTGCAGATGCGACTATCGCTACAGACACAT
GGGTTCCTCTTCGCCAAACGAACGGGGAACTTCGAATACAGATGTTAATT
AAGCCGGAGTCCGATGGGCGCGCGAGTAGTGCGGGATTCTTGACAAGGCC
ACAAGGGTTTCTACTGCCCACTGCTGAATTTGATATGATGGCCAGGGAAG
GAATGGTTAAGGTTAGTGTGCCGGCCTCTCATGGCTCCCTCGACAAACGT
CTGCTGGAAGTTCAAGAGCAGTACGACTTTAGTGCCGCGCGTGGATACCG
AGAGGGCACGCCAGATCAAGATGCCGGCAATTTGATATGATGGCCAGGGA
AGGAATGGTTAAGGTTAGTGTGCCGGCCTCTCATGGCTCCCTCGACAAAC
GTCTGCTGGAAGTTCAAGAGCAGTACGACTTTAGTGCCGCGCGTGGATAC
CGAGAGGGCACGCCAGATCAAGATGCCGGC
back to top