mRNA_H-paniculata_contig9070.16905.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9070.16905.1
Unique NamemRNA_H-paniculata_contig9070.16905.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9070.16905.1 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.010e-48
Identity = 102/234 (43.59%), Postives = 131/234 (55.98%), Query Frame = 1 
Query:    1 RTQVRRQLFREDAQAKPLVFCPFCGDGVLKSGGLKGHLEGCFVFNRCRGGATHAEVGIAIACVCVWWPPQMRQKECRGTCSSQHN----QEKQVLLSRNVAYAGLPEANASTAXXXXXXXXXXXTGAIAGPSPVKTGSDFAGQHIGDLPNSPIPTVEIPAEISVDEFERCGDCGRTFAPGRLQAHAKACRSVFLERRTPYDPRAMRAKGTPLEFFQQPLEAPVANGSPELPAAG 690
            R +VRRQLF ED++A+PLVFCPFCG+GV+++GGL+ HL+ C+V +RCRG  TH +V +AI  V V            G  +S  N    Q+   LL   +                         G +     V TG    G   G++    +            E ERCGDCGRTFAPGRL++HAKACRSVFLERR PYDP+AMRA+GTPLEFFQQP+ A  ++G+P     G
Sbjct:  903 RHRVRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIRAVSVEHQMHTSATNTHGKGASSLNGGSFQDSSTLLQHALPPFVSKGNGPENVLAPAVASENSELGGV-----VATGGG-RGAAAGEVSGVGLEVSLGGGGAGGAEEERCGDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPSTSGTG 1130
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BLAST of mRNA_H-paniculata_contig9070.16905.1 vs. uniprot
Match: A0A6H5KQR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.370e-46
Identity = 103/234 (44.02%), Postives = 134/234 (57.26%), Query Frame = 1 
Query:    1 RTQVRRQLFREDAQAKPLVFCPFCGDGVLKSGGLKGHLEGCFVFNRCRGGATHAEVGIAIACVCVWWPPQMRQKECRGTCSSQHN----QEKQVLL----SRNVAYAGLPE--ANASTAXXXXXXXXXXXTGAIAGPSPVKTGSDFAGQHIGDLPNSPIPTVEIPAEISVD-------EFERCGDCGRTFAPGRLQAHAKACRSVFLERRTPYDPRAMRAKGTPLEFFQQPLEA 651
            R +VRRQLF ED++A+PLVFCPFCG+GV+++ GL+ HL+ C+V +RCRG  TH +V +AI  V V            G  +S  N    Q+   LL    S  V+    PE     + A           TG + G +    G + +G               + +E+S         +FERC DCGRTFAPGRL++HAKACRSVFLERR PYDP+AMRA+GTPLEFFQQP+ A
Sbjct:  105 RHRVRRQLFSEDSEARPLVFCPFCGEGVVRARGLRDHLQECYVLDRCRGSETHKQVEVAIKAVSVENQMHTSATNTHGRRASSLNDGSFQDSSTLLQHALSPFVSKGNDPENVLAPAVASENSELGRVVATGGLRGTA----GGEVSG---------------VSSEVSSGGGGAGGAKFERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGA 319
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BLAST of mRNA_H-paniculata_contig9070.16905.1 vs. uniprot
Match: A0A835Z7V0_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.470e-9
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  490 ERCGDCGRTFAPGRLQAHAKACRSVFLERRTPYDPRAMRAKGTPLEFFQQ 639
            E+C DCGRTFA GR+ AHA+ CR VF  RR  +D R  R +GTPL F Q+
Sbjct:  786 EQCADCGRTFAEGRIDAHARVCRRVFGARRPVFDGRERRLRGTPLAFMQR 835
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9070.16905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFQ9_ECTSI1.010e-4843.59WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KQR3_9PHAE1.370e-4644.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7V0_9STRA6.470e-958.00WW domain-containing protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9070contigH-paniculata_contig9070:1400..6318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size690
Cds size690
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9070.16905.1prot_H-paniculata_contig9070.16905.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9070 1400..6318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.5058968-CDS-H-paniculata_contig9070:1399..15401622931131.5058968-CDS-H-paniculata_contig9070:1399..1540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9070 1400..1540 -
1691481604.5728574-CDS-H-paniculata_contig9070:1399..15401691481604.5728574-CDS-H-paniculata_contig9070:1399..1540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9070 1400..1540 -
1622931131.521969-CDS-H-paniculata_contig9070:3679..40221622931131.521969-CDS-H-paniculata_contig9070:3679..4022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9070 3680..4022 -
1691481604.5866773-CDS-H-paniculata_contig9070:3679..40221691481604.5866773-CDS-H-paniculata_contig9070:3679..4022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9070 3680..4022 -
1622931131.5396116-CDS-H-paniculata_contig9070:5191..52801622931131.5396116-CDS-H-paniculata_contig9070:5191..5280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9070 5192..5280 -
1691481604.5993204-CDS-H-paniculata_contig9070:5191..52801691481604.5993204-CDS-H-paniculata_contig9070:5191..5280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9070 5192..5280 -
1622931131.5665667-CDS-H-paniculata_contig9070:6201..63181622931131.5665667-CDS-H-paniculata_contig9070:6201..6318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9070 6202..6318 -
1691481604.6070702-CDS-H-paniculata_contig9070:6201..63181691481604.6070702-CDS-H-paniculata_contig9070:6201..6318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9070 6202..6318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9070.16905.1

>prot_H-paniculata_contig9070.16905.1 ID=prot_H-paniculata_contig9070.16905.1|Name=mRNA_H-paniculata_contig9070.16905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
RTQVRRQLFREDAQAKPLVFCPFCGDGVLKSGGLKGHLEGCFVFNRCRGG
ATHAEVGIAIACVCVWWPPQMRQKECRGTCSSQHNQEKQVLLSRNVAYAG
LPEANASTAAAAAAAAAAAGTGAIAGPSPVKTGSDFAGQHIGDLPNSPIP
TVEIPAEISVDEFERCGDCGRTFAPGRLQAHAKACRSVFLERRTPYDPRA
MRAKGTPLEFFQQPLEAPVANGSPELPAAG
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mRNA from alignment at H-paniculata_contig9070:1400..6318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9070.16905.1 ID=mRNA_H-paniculata_contig9070.16905.1|Name=mRNA_H-paniculata_contig9070.16905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4919bp|location=Sequence derived from alignment at H-paniculata_contig9070:1400..6318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACTCAGGTGCGACGGCAGCTGTTCAGGGAGGATGCCCAGGCGAAGCC
CTTGGTGTTCTGTCCATTCTGCGGCGACGGCGTGCTCAAGTCGGGCGGGC
TTAAGGGGCACTTGGAGGTGACGGACCGACCTGTCTCCTCCTTAGCACCA
ACCACCCGTCCTCTAATGCTGATTCGACTCATTCGTTGATAACTATCTTT
TGGCAGTTCTTGTGTCTGCCGTTTCTATACTCACTGTCACCGCCATCATC
ATCGTCAACGTCATCGTCATGGGGCATTTTCCCCCAAGATTTATAAACAG
GGCTCTGGTGGTGGTGGTGGTAGTGTGTGTGTGTGTGTGTGTATGTGTGT
GTGTAGAACGATCGCCGCTCCGCAGAGTGGCCGCCAAAAACTCAAATTAA
ACCCCCATTCAATGGCATGCGATCACACACCCCTAAAGGTCCACAACGAA
CGATTCGGAATGGTCGTACCGTACCCATCCAGGGGTGGGGAGATATTTTG
CCTAGCCGCTCCACAAAGGGACTCAAAACTTGGAACAAACTGTGTTGAAT
TAACCGCCCCTGAACTCCCCCCCTTCCTACCGTACATTTTACATTTTAGA
GCAAGACAATACTCCATGCGTTCTGCATGGGTCTGGAATCGGAACACAGT
AAAAAGTGTTGTGGGCTTAAGCTTCTTCCCTCTCGATGCTGCTGATACAG
ATTTTTTTTTTTTTGTGTCTGGGGTAGAAAGAAACAAAAGGCCAAGTTTT
GCAACGCAGGAAAGAGCGAGGTGCTATCGGAAATCGCTCTGATACAGAAG
CAAAGCTCCATCCTCCCAAGGCTACAGGTGTGGACAATGACCTAACAACC
ACGACATGCGAAATATGACTACGCTTCCCCCTGCCATAGTTGTACATAAC
ACTACAGCATTACTTCTATGGTATATTTATTACCTCTCCAAACAAGCCTA
TACGTTTGAAGTATTTCATATAATTGCAGCCTTTTGTCTTTTTTTTGCAG
CACATCACCGCCCCTCCGTTAACTGCTCGTTCCGGCAGGGCTGTTTCGTG
TTCAACAGGTGCCGTGGAGGTGCAACACACGCCGAGGTGGGGATAGCAAT
AGCGTGTGTGTGTGTGTGGTGGCCACCGTAGGAAACACCTCAAAAGGGAT
AGTAATCACCCAACGTCTGTCGAGGACAGTTACTTCATTTTCATATATAT
ATATATATAGTCGTTTTCTAGAGGGAAGTCGATAGATCCGCGAAATCACT
CACGCCGGATGGAATAGCAATACTTGGGGAGAAATTTGCAACGTTTTTTT
TTTCTCATGTATACGCTCGATGGGTTCAGCCTGGGCATGTGTTATGATGA
ATGTATATGTATGTTTGGGAGAGGGGGGGGGAGCAGAAAAGGATGGCAGA
AAACATCCCAAAACAAGTCATTCCAACCTGTCCTATTTTTTTTTTGGCGT
CATTTTGTGAACTGGTTGATGACGGTGGACTGACTGTATTATGGTCATGT
TCTAGCGGTACTAGGTATCTCATGTATTTTTTAGGTCGAAATTGAAGGGG
GATACGAGGGGAATTGGCGCAACTTCCAGGGGTTCTAACAGTAACTTGAA
TGGTCATGTTCCAGGTGATGGCAGCTCTCGGTGCTTTGTCATTATCCAGC
GACCCCGTCCGCAAGTCTCAAGATCGGGACGGGAGCAGAAACAGGAGCGT
AGCGATACACAGCAGCTCTACCAAATCCCAAGCAAGAGAAATTTTGCAGT
CCCAAGGTGAAAGAGTGATTAAATACATGGATCGAGCTACGGTAGAGGGG
TGGGGGTGGGAGGTTACTGTTTTGCATCCCATGGTTGTTGGACCATCGAC
GAGGCATGTAGTCCTCGACCACAGACCTACGCCCGAACGGGTAGGGTAGC
TCGTGAACTGAGCATGACTGGAAGTCTAGTCAGAGGTCTTTTAGTGGGTG
CAACCCCCATACTACCTACTTGGTTCGGCCGAACCGGGGTGGTGCCTACC
CCGCAGAGGAATAAATAACTCTTTTCTGTTGAAGGAAATGTAGACATACT
ATGGTAAAGTACTTGAGAGTATGGAAGCATCGGTAGAGGTTTTGGCCTCA
GCCTTCCGGGGGTTAAAAAAAAAAATGAACCATACGTGAACAAAATTCTC
AACCAGGGCTCTAGACTATTGCCTGTTTTTAGTGCATCTCCGAATGATGC
ACGGGAGTCATCTTTCGTCATTTTGGGGACTTTTACTTGAATATTAGTGA
GGCGTCTTTGATACAGCGAGAACGGGCAAACATTACTAATTTCCAGACAA
ATGAGGCAAAAAGAATGCAGAGGCACTTGTAGCTCCCAGCACAATCAGGA
AAAGCAAGTCCTACTCTCTCGTAATGTTGCTTATGCAGGTCTTCCTGAGG
CAAACGCGTCAACAGCGGCAGCAGCAGCAGCGGCGGCGGCGGCAGCAGGA
ACAGGAGCAATAGCAGGCCCATCGCCGGTGAAAACAGGCTCTGATTTTGC
CGGTCAGCACATCGGGGACTTGCCGAATTCCCCGATACCAACCGTGGAAA
TTCCTGCAGAAATTTCCGTGGATGAGTTTGAGCGGTGCGGGGATTGCGGG
AGAACGTTTGCGCCCGGGAGGCTTCAGGCGCATGCCAAGGTACTTTTAAA
CGCCGGCGGAGATAGAGGAGTCGTATTTTCACAATTATTATGTGGTGTCA
GTTGTTACAAGCATCCGTGGTACTGGCCTGGCCCTGTATGGGACATGAGT
CGGGCTGCGGTGGGAGGCGAGGGGTGGGCGTGTTCCGAGCCACGTGTTTA
AGGAAGGGTCATTTTTAAGAGCGCTCCACCCCCCCCTACTGAAGCCCTAC
TCTTCGGTACATGAATTACATGTTTGGTCTGCACCTAGTTTACCTTTTGC
AGGGTCACCTGCTGTACTTTGCATTGCATACCTCTAGTGGAGGTGGCCAG
GTGACGCACAGCTGTCAAGAAGTAACTGTACATCGTTATCATACAGAATA
AGTGAAATAACAGATATATACATGAGTGGGCATTAGACTTACGGCGGTGA
TAGATTCATGGCAGGCCAAGTTGACTTTTCGCCGATCACATCCCTTCGTT
ATCTAATATATATATATATATATTATTCAAGGTAACAATATTTCAACATA
TGAACAATACTAGTTAAATACTCAAGTATGGAAGCATCGGATAAAGGGTT
TTTGCCTTAGCGTTCCGGGGGTTAAAAAAACTCACGAAAAAACGCATGGA
CAAGGGAGCAGCAAAGGCTTCAAAATCAAAGTATAGGTCTAGGCTAAGCA
ACAAAATAGGGTCAGTAGAGGTAGGTAACAGCCGGCGCGACTTATTACAG
AAAAAGAATCACGCTAGCATGGTACTGCCAGAAACATCATTAAATATTCA
TACCCTATTCGTATCGGAAACCAGCAGTTCTTCGAGCGTTCCAAACGAGC
GTTCCAAAACAAATCATCTGAACCATCTCCGATGGGTTGCATCCCGAGGT
CTGATCTAAATATATGTTGTATTATTACATGCAAAAACAGATCTCAGAAA
GCAGACCTCAAAGGTCGACGTCTCACAAGGGTTAATTAGCGGAATAGAAA
ATAGACATATCGAAACCCCCGCCTACACTTGGCGATGGTAAATGCATTCA
GAGGTTGATTGTGTACTTCACTAGCCCTTTTGCCCCAAGTTTTTCGCGGC
GGTGAGTGATTCACGGTGCTGGTTCGTACTTGGTCATTTACCTGTCTTCT
GCTTGATACACTATTGCATGTGAGTCGGGCGGCTGCAGTAGGGGACGGGG
GGGATACGCTGAGCCGCTTTTTTTACAATTTGAGCCATTTTTGGGAGCGG
CTCGGGACGATATCTTGTTACACCCTTGAATGTACTAGTATGGTCGTTCC
GAAGCGTGCAGTGTGCTCCTCTAGGGATACCTGAACGCGCGCCATTAGAT
AGGTTTGAATCTTTTTTATTTGAATTTTATTAGAGCCGCTTTTCGAAATG
GCCCTTCGTCGAAGAGATGGCTAGAAACACGCCTCACCCCACACAACCGT
AGCCCGACTCGGCGACTCAGGGATTGTATGATATGTTGGGCTTCCGGAGG
AAATAATTAATAGTATGCCGTCTGTTGGATCGGTCTTCGATGTGTTCTTG
TGGTTTTCGGTAACTTTCCACCCTGCGAACACGATAATGAAACAAGTTGC
TCATGTGAGTCAGATGTCGTTCCCTTTAGCGTAGGTATTTTTTACATTAT
ATTATAATATACTATATACCGTAAACAGAGATGATTTTCGATAAAGGGCT
TTTTGTCACATATCGCCCATCTTTCATATGGGTACACACCGTAAGTATGG
GGAGATATGTACTTGTTCTCAGAAACAGACGGCAAGGCACAGGGACTCAA
ATACACCGCTGCTGTGTGTGGACCATTGTCGCCGCTACCGCTTTGAGAAT
AATTCGATGCGAGCGTCTCGTTCAGTGGAGGCACTAATTGCTTCAAGTTC
ACGGGTAAAGTGCTTCCTTCAACGACCCACGCTGATATGGCAACTTAATT
GAAAAGATGCCAAAAAACTGTGTGTGTGTTTTTTTTTTTGAAAATCGAAG
TAAAATAAAGTTTGTAGTTGAGAATTTGGATTTTGCTGCCGCCCCGCAGC
AGATTCAGTGACAGTCGATATCGTACAGGAAGTGTGATTGCGTTCTGTAC
CCTCGCGGTGAACAGCTGGGCCCACATTAAACTGACATTTTGAACACTCT
TCAATCGTTGAACGATTATCGTCACCAGGCATGCCGCAGCGTGTTCTTGG
AACGTCGCACCCCCTACGACCCAAGGGCCATGAGGGCTAAGGGCACTCCG
CTTGAATTTTTCCAGCAGCCGCTAGAAGCTCCAGTCGCGAACGGGTCGCC
TGAGCTTCCTGCCGCCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9070:1400..6318-

>mRNA_H-paniculata_contig9070.16905.1 ID=mRNA_H-paniculata_contig9070.16905.1|Name=mRNA_H-paniculata_contig9070.16905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig9070:1400..6318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACTCAGGTGCGACGGCAGCTGTTCAGGGAGGATGCCCAGGCGAAGCC
CTTGGTGTTCTGTCCATTCTGCGGCGACGGCGTGCTCAAGTCGGGCGGGC
TTAAGGGGCACTTGGAGCGCACTCAGGTGCGACGGCAGCTGTTCAGGGAG
GATGCCCAGGCGAAGCCCTTGGTGTTCTGTCCATTCTGCGGCGACGGCGT
GCTCAAGTCGGGCGGGCTTAAGGGGCACTTGGAGGGCTGTTTCGTGTTCA
ACAGGTGCCGTGGAGGTGCAACACACGCCGAGGTGGGGATAGCAATAGCG
TGTGTGTGTGTGTGGTGGCCACCGGCTGTTTCGTGTTCAACAGGTGCCGT
GGAGGTGCAACACACGCCGAGGTGGGGATAGCAATAGCGTGTGTGTGTGT
GTGGTGGCCACCACAAATGAGGCAAAAAGAATGCAGAGGCACTTGTAGCT
CCCAGCACAATCAGGAAAAGCAAGTCCTACTCTCTCGTAATGTTGCTTAT
GCAGGTCTTCCTGAGGCAAACGCGTCAACAGCGGCAGCAGCAGCAGCGGC
GGCGGCGGCAGCAGGAACAGGAGCAATAGCAGGCCCATCGCCGGTGAAAA
CAGGCTCTGATTTTGCCGGTCAGCACATCGGGGACTTGCCGAATTCCCCG
ATACCAACCGTGGAAATTCCTGCAGAAATTTCCGTGGATGAGTTTGAGCG
GTGCGGGGATTGCGGGAGAACGTTTGCGCCCGGGAGGCTTCAGGCGCATG
CCAAGACAAATGAGGCAAAAAGAATGCAGAGGCACTTGTAGCTCCCAGCA
CAATCAGGAAAAGCAAGTCCTACTCTCTCGTAATGTTGCTTATGCAGGTC
TTCCTGAGGCAAACGCGTCAACAGCGGCAGCAGCAGCAGCGGCGGCGGCG
GCAGCAGGAACAGGAGCAATAGCAGGCCCATCGCCGGTGAAAACAGGCTC
TGATTTTGCCGGTCAGCACATCGGGGACTTGCCGAATTCCCCGATACCAA
CCGTGGAAATTCCTGCAGAAATTTCCGTGGATGAGTTTGAGCGGTGCGGG
GATTGCGGGAGAACGTTTGCGCCCGGGAGGCTTCAGGCGCATGCCAAGGC
ATGCCGCAGCGTGTTCTTGGAACGTCGCACCCCCTACGACCCAAGGGCCA
TGAGGGCTAAGGGCACTCCGCTTGAATTTTTCCAGCAGCCGCTAGAAGCT
CCAGTCGCGAACGGGTCGCCTGAGCTTCCTGCCGCCGGGGCATGCCGCAG
CGTGTTCTTGGAACGTCGCACCCCCTACGACCCAAGGGCCATGAGGGCTA
AGGGCACTCCGCTTGAATTTTTCCAGCAGCCGCTAGAAGCTCCAGTCGCG
AACGGGTCGCCTGAGCTTCCTGCCGCCGGG
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