mRNA_H-paniculata_contig9065.16899.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9065.16899.1
Unique NamemRNA_H-paniculata_contig9065.16899.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9065.16899.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.160e-28
Identity = 71/153 (46.41%), Postives = 92/153 (60.13%), Query Frame = 1 
Query:    1 ALVDAGEKTGVEVSYCSAYDPT-----GCGSSGCHCGLTRDNDYNSPTSRWSCKYDLIEKDCKVCYTFDEPQDIEELGVSFYKGDKRKRTITLKLDNTNGVDDKTYEFTSSGDSTSYEYFDLSSDETKKLCIEAEDLDSSEWLSIKEVVFLVD 444
            ALVDA ++T V   + +AYD       GC   GC   LTRD  +    SRWSC   L +  CK+ Y F+EPQDI  + + FYKGD+R RT+ LK     G D      TSSG S+ YE +D+++DETK L +EA +LD  EW+SI EV F+VD
Sbjct:    3 ALVDARKRTTVN-KWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDE-SRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLK-----GSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRFMVD 148
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BLAST of mRNA_H-paniculata_contig9065.16899.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.200e-13
Identity = 56/148 (37.84%), Postives = 79/148 (53.38%), Query Frame = 1 
Query:    1 ALVDAGEKTGVEVSYCSAYDPT-----GCGSSGCHCGLTRDNDYNSPTSRWSCKYDLIEKDCKVCYTFDEPQDIEELGVSFYKGDKRKRTITLKLDNTNGVDDKTYEFTSSGDSTSYEYFDLSSDETKKLCIEAEDLDSSEWLSIKEV 429
            ALVDA ++T V+  + +AYD       GC   GC    TRD  +    SRWSC   L +  C + Y F+EPQDI  + ++     + K+ IT                 SSG S++YE +D+++DETK L +EA +LD  EW+SI EV
Sbjct:  607 ALVDARKRTAVK-KWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDE-SRWSCSEKLEDAQCNITYNFEEPQDIVRIKIN----GEFKKIIT-----------------SSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEV 731
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BLAST of mRNA_H-paniculata_contig9065.16899.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.350e-12
Identity = 51/146 (34.93%), Postives = 82/146 (56.16%), Query Frame = 1 
Query:   13 AGEKTGVEVSYCSAYDPTGCGSSGCHCGLTRDNDYNSPTSRWSCKYDLIEK--DCKVCYTFDEPQDIEELGVSFYKGDKRKRTITLKLDNTNGVDDKTYEFTSSGDSTSYEYFDLSSDETKKLCIEAEDLDSSEWLSIKEVVFLVD 444
            A   TG +     A    GCG  GC   L  D   +   SRWSC  D++     C++ +TF  PQ++++L V F+KG++R RT+ +K+   NG  +K  EF S   S +  YFD+ + +   + +E+  LD+ EW+S+ EV+F+V+
Sbjct:  201 AASATGFDERPGQASGDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKI---NG--EKFGEFDSHPGSVT-SYFDVIAYDVHTVTLESLGLDTDEWISLLEVIFMVE 340
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9065.16899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G122_ECTSI4.160e-2846.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E8_9PHAE3.200e-1337.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFX1_9PHAE1.350e-1234.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9065contigH-paniculata_contig9065:5585..8943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue5.1e-14
Seed eggNOG ortholog2880.D7FL48
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1328
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9065.16899.1prot_H-paniculata_contig9065.16899.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9065 6462..8943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.7893825-UTR-H-paniculata_contig9065:5584..64611622931130.7893825-UTR-H-paniculata_contig9065:5584..6461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9065 5585..6461 -
1691481604.2471771-UTR-H-paniculata_contig9065:5584..64611691481604.2471771-UTR-H-paniculata_contig9065:5584..6461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9065 5585..6461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.8073297-CDS-H-paniculata_contig9065:6461..64851622931130.8073297-CDS-H-paniculata_contig9065:6461..6485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9065 6462..6485 -
1691481604.2620766-CDS-H-paniculata_contig9065:6461..64851691481604.2620766-CDS-H-paniculata_contig9065:6461..6485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9065 6462..6485 -
1622931130.8221483-CDS-H-paniculata_contig9065:7670..78951622931130.8221483-CDS-H-paniculata_contig9065:7670..7895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9065 7671..7895 -
1691481604.2751646-CDS-H-paniculata_contig9065:7670..78951691481604.2751646-CDS-H-paniculata_contig9065:7670..7895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9065 7671..7895 -
1622931130.837036-CDS-H-paniculata_contig9065:8742..89431622931130.837036-CDS-H-paniculata_contig9065:8742..8943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9065 8743..8943 -
1691481604.2866526-CDS-H-paniculata_contig9065:8742..89431691481604.2866526-CDS-H-paniculata_contig9065:8742..8943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9065 8743..8943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9065.16899.1

>prot_H-paniculata_contig9065.16899.1 ID=prot_H-paniculata_contig9065.16899.1|Name=mRNA_H-paniculata_contig9065.16899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
ALVDAGEKTGVEVSYCSAYDPTGCGSSGCHCGLTRDNDYNSPTSRWSCKY
DLIEKDCKVCYTFDEPQDIEELGVSFYKGDKRKRTITLKLDNTNGVDDKT
YEFTSSGDSTSYEYFDLSSDETKKLCIEAEDLDSSEWLSIKEVVFLVDE*
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mRNA from alignment at H-paniculata_contig9065:5585..8943-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9065.16899.1 ID=mRNA_H-paniculata_contig9065.16899.1|Name=mRNA_H-paniculata_contig9065.16899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3359bp|location=Sequence derived from alignment at H-paniculata_contig9065:5585..8943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTTGTTGATGCTGGCGAGAAGACTGGTGTGGAAGTCTCGTACTGCAG
CGCCTACGACCCGACCGGTTGTGGATCATCAGGCTGCCACTGCGGTCTAA
CCCGCGACAACGATTATAACTCCCCTACTTCTCGCTGGTCCTGCAAGTAC
GACCTCATTGAAAAGGACTGTAAGGTGTGCTACACCTTCGACGAGCCTCA
GGTGACACCCACGCATCTCCGTATACTACATATACGTCTCGCTGTTCTCC
CACATGCTCCATGATATGTAATAACAGCATGTTGTAGATTAGACCGTCGG
GAGGTAGATGATGCCACATGAGAATAGGTGGTGACTCCTTCAGGGTGGGG
CTTCCTTCAAAAGAATGCCTCGTCTCGTTTGAAAAAAGAGATGAATATAT
TCCGAGCGATAGTGGCCCTGACCATCTGCTTGATAGTCTTGCTGACCGCT
CTCCAACCACTGGACACCTGCTGAGGGGATCCAAGTACATGCAACTTGAT
GTATATAGTGTGGTAAAAGTCGGGATGAACTATAATGTGCACAGCATACA
CGCGTGCCGGCAGCGCCAATGTTCCAAATTACGTTTTCTACGCGCCTTCA
GAAGACGTGAGGAAAGGAAAATGTGAACTCCTACACCCTTCTCATGATCT
ATTATTGGCGGTGACTGGGCCACATATCTCTTGCATACAGCTCTTTACTC
CCGCCTCAGAGAACTTACTTCATTGGGGGACGACCCATGTGTCTGTTGTT
GTGGGTTAATGATTCCAGAATACTCCCTTGTGAGCCTTTGCCGTACCATA
GCATCTTTGAAGCATGTTCTCTGTGCACGTTACACGCTGCACACCTCGGC
GGAACTCTTGCGTACTTAGTGTCTAATCGAGTTACCACCCTTCTACCTCC
TTGAGCCATGAATATATGCTGCCAAAACTCAACCATTACCGTGCTTGGGC
TATTATATAGGAAGCCAGCGAACACAGAGCATGTACGAAACAACTGCTCT
GACCAGTCGCTTCACGTGCACCTCGTTTCGTTGCCTGGATGGAATCAGGA
TATCGAAGAGTTGGGCGTGTCGTTCTACAAAGGCGACAAACGCAAGAGGA
CTATCACCTTGAAGCTAGACAACACCAACGGCGTCGACGATAAGACCTAC
GAATTCACCTCCAGCGGAGATTCCACCTCCTACGAATACTTCGACCTGTC
TAGCGACGAGACTAAGAAGCTGTGCATCGAGGCCGAGGACCTGGACAGCT
CGGAGTGGCTCAGCATCAAAGAGGTCTGTTCATGTTGCGGAGAGATGCTG
TTAGGATAGATCCAAGTCATTTATTGGTGTTGATGTTGACATGATCGTCC
ATTTGCTGCACATGAGCGACATGTTTATGCATGTGTTCGTGCACATATTT
TCTCTCCAGGAATAATAAACACGATAGTACAACTTCAACACGTCCGCGAG
CGGCGCTCCTAGTACGATGTATTGTCCCTAGTCTTACATCAATATAGAAT
TTCGAGAGGCCTATTGAATTGTGGTATATAAGACTGCACTGAAAACATCT
ATGGATCCGCGCTGGCAAATATTGTTATCAGTATTATCCTCTCCACAATA
CTCTGCATCCAGGAATACACAGTAGTGTGTAGCATGGTCTATAAGTGAAC
AAGTCGTTGAGTAGGAGGTAGCCATTGAGCACGATACCAGCGGTCAAGAC
CGTCTGCCTGAACGGTGCCCCCGTACCCAGTAGTGTCGTCCTTTTCGCGC
TGCACACCTGCTTCCTCTGTCTCATCTGTATGCTTAGTTATGATAGAGGA
GTTTGAAAATCTCCGATTTTTCTAAAGCTCGACTTCTACATATTTTTGGG
GTTGAAACCTCAAAAAATAAGTCAAAACGTTGACTTTTAGTACTAAAACA
CGCGCCGTGAAAAATCGTGCTCGGTCGAAAACCCCCAAGACCTTTTCCCA
TAGAACTCGAAGAAAGACGTGCATTATTTGGCGTTTTCCGGCAGAATGCT
TCTTTTCACGGTGTGTGTTTTGGTGTTGAAAATAATCTATTTAACTCCAT
AGTTTGGGGTCCAACCTCCAAAAAGTGTAGGTTTGTAATTATTATAAAAT
CAATATAATCTGAGATAGTTGAAATGCGCCTCTAATCACAACGCACTGTA
CTTGTGGGAAACGTACCGTAAGTCCCAAAAAATACCTTTCTTCGGCTGTG
TATATTTCTTCGCGCTGCGTGTTTAGGTGTTAAAGTTCAACTGTTTGACC
CAATTTTTGGGTCAACGAGAAAGCACGGAGCAAACATTAGAACTCCGTTA
AAAATAAATCGGAGACGTTTAAATACCTCTATAATCACAATTGAGTATAC
TTGTATGAGATAGAGCAAGAACAAGAAGAAACCCAAACCATGCCCTTCTT
TCCCCTTTCCCCTCTCCTCGGCTGGGCATGTGTGAAAAATGTTTTGTTCT
GCTGACAGGTGGTCTTCCTTGTGGACGAGTAATGTTGGTTATCCCACCAG
CATCGCCGTCGACGCACCGCACGCAGCAAGGTGTCAAACATGTCTAACTT
CCTGAAGCCACTGTGCATATTCGAGCGTTTAGATATCCTCTTCGACTTGC
TGGTATCGGTGCAGCATGTATATAGATAGCAACGAAGAAACACACCTTCT
TCGAGGGTAAACTAGCAGAGTTCGTGGTTCGTTGGCATTTCTCTTCGTGA
TTCCGCTGCTCAATTGTTGTGTCTTAAGTGAACAACAAATCATAAGTTGG
AAATATCAAATTAAGACGGGGTGTGTCCAACTAGTTTTAGTATAGTCTAA
ACTAGGATCTTCGCAGGTTGTTCTTTGTGTTTCATGTATAGTCTTATCGC
GCTGCGCAAGGTCGGACGACTGGGTAGGGGTGCCAAAGAGCTGTCCGACG
TGGGACTAAGTTGCTCTGTCATCTGATTCATCGAGCTAGAGGGGTTAAGC
CAACAACATCTAACATACTAAACTGGTGGTGTCGTCCTACGTGAAAATGT
ATGTATACTTTTCCGGTTTGGAGCTTGGGAGTGCGGTACCAAATTTGCTT
GCTGCTGAGCAGAATGTGAGTAGTGTTGGGAGATCAGGTGGTGGCAGGCG
ATTGAGAGTTGTGTAGAGCCCCGACAGAAGGCGACCGTAACAGACTACAG
GCCGTTCGCACCACCGGTCGGCCAGCCTATCTTACTTGATTGGTAGATAC
CAAGGTAGAGGGTGCGAACGATAAGAAAGCGGGAGTGGGGGTAAGGCGTT
GAGTGAATTGAGGCTTTATTGGCTTGATTGAGTTGTCTCCGTCCAGCAGA
GAGGGTGTTTGGTATGCACACAATGCATTGACCTAAAATATATTGACTAT
AGAAACCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig9065:5585..8943-

>mRNA_H-paniculata_contig9065.16899.1 ID=mRNA_H-paniculata_contig9065.16899.1|Name=mRNA_H-paniculata_contig9065.16899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig9065:5585..8943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTTGTTGATGCTGGCGAGAAGACTGGTGTGGAAGTCTCGTACTGCAG
CGCCTACGACCCGACCGGTTGTGGATCATCAGGCTGCCACTGCGGTCTAA
CCCGCGACAACGATTATAACTCCCCTACTTCTCGCTGGTCCTGCAAGTAC
GACCTCATTGAAAAGGACTGTAAGGTGTGCTACACCTTCGACGAGCCTCA
GGCGCTTGTTGATGCTGGCGAGAAGACTGGTGTGGAAGTCTCGTACTGCA
GCGCCTACGACCCGACCGGTTGTGGATCATCAGGCTGCCACTGCGGTCTA
ACCCGCGACAACGATTATAACTCCCCTACTTCTCGCTGGTCCTGCAAGTA
CGACCTCATTGAAAAGGACTGTAAGGTGTGCTACACCTTCGACGAGCCTC
AGGATATCGAAGAGTTGGGCGTGTCGTTCTACAAAGGCGACAAACGCAAG
AGGACTATCACCTTGAAGCTAGACAACACCAACGGCGTCGACGATAAGAC
CTACGAATTCACCTCCAGCGGAGATTCCACCTCCTACGAATACTTCGACC
TGTCTAGCGACGAGACTAAGAAGCTGTGCATCGAGGCCGAGGACCTGGAC
AGCTCGGAGTGGCTCAGCATCAAAGAGGATATCGAAGAGTTGGGCGTGTC
GTTCTACAAAGGCGACAAACGCAAGAGGACTATCACCTTGAAGCTAGACA
ACACCAACGGCGTCGACGATAAGACCTACGAATTCACCTCCAGCGGAGAT
TCCACCTCCTACGAATACTTCGACCTGTCTAGCGACGAGACTAAGAAGCT
GTGCATCGAGGCCGAGGACCTGGACAGCTCGGAGTGGCTCAGCATCAAAG
AGGTGGTCTTCCTTGTGGACGAGTAAGTGGTCTTCCTTGTGGACGAGTAA
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