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Homology
BLAST of mRNA_H-paniculata_contig9000.16857.1 vs. uniprot
Match: A0A6H5JZF2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZF2_9PHAE) HSP 1 Score: 113 bits (283), Expect = 3.170e-24 Identity = 66/137 (48.18%), Postives = 82/137 (59.85%), Query Frame = 2
Query: 245 SRALSHTPPLLPTHAVENEASALVANPLNEFSLEACRTAVSDRCLEAACSLLHFEIAEVWTYTGDYSAAEGKAVEPMLLHVYTSPATIESFGGKLKGVWSGGGEGARHSLSPSV----RSPCTLSWSRTEYGNRLLH 643
SR++SHTPPL PT + + + +PL +FS + +D CL A CSLL F+IAEVWTYTGD SAAEGK +EPM LHVY PATIESF + G ARHSLSP + R L W + + + LH
Sbjct: 47 SRSISHTPPLPPTDSQDGGRTTF--DPLEDFSHDTSNLDATDGCLAAVCSLLQFQIAEVWTYTGDISAAEGKPLEPMCLHVYARPATIESFK-DVHGALRDDNTSARHSLSPGLVDEARKQERLLWFTSMHPDTPLH 180
BLAST of mRNA_H-paniculata_contig9000.16857.1 vs. uniprot
Match: A0A836C8Q0_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q0_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.690e-10 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 2
Query: 335 FSLEACRTAVSDRCLEAACSLLHFEIAEVWTYTGDYSAAEGKAVEPMLLHVYTSPATIESFGGKLKGVWSGGGEGARHSLSP 580
FS++A + DRCL+AAC+ L F++ EVW++ G+ GKA+EP+ L Y PATIE++G ++K RHSLSP
Sbjct: 4 FSMDAMNMSAVDRCLDAACASLGFDLGEVWSFCGEVQ--RGKALEPVCLRAYARPATIETYGSRVKLGLDHESVSQRHSLSP 83
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 996 |
| Cds size | 651 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9000.16857.1 >prot_H-paniculata_contig9000.16857.1 ID=prot_H-paniculata_contig9000.16857.1|Name=mRNA_H-paniculata_contig9000.16857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
MSAPLSSLPPPGQERNVSHAGASSEFTQPLSSASPPSRALSHTPPLLPTH AVENEASALVANPLNEFSLEACRTAVSDRCLEAACSLLHFEIAEVWTYTG DYSAAEGKAVEPMLLHVYTSPATIESFGGKLKGVWSGGGEGARHSLSPSV RSPCTLSWSRTEYGNRLLHPPPRISYGTVYYSALCRYGVDFIMAGKNERI NHFPFFSTASIEILSN* back to topmRNA from alignment at H-paniculata_contig9000:1787..9223- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig9000.16857.1 ID=mRNA_H-paniculata_contig9000.16857.1|Name=mRNA_H-paniculata_contig9000.16857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7437bp|location=Sequence derived from alignment at H-paniculata_contig9000:1787..9223- (Halopteris paniculata Hal_grac_a_UBK monoicous) CTATCTCAACGAGAGACAACGCAACGGTAACTAGTTTGTAATAATATCAC
ATCAGTCGTGGTTGATCTACTACCCTCTCTAGCGTGCGACATTAGACAGA
CAGAAAGACACAAAGAAGTCGACCAGCGATCAAGAAATGAGTGCTCCTCT
TTCGTCGCTGCCTCCACCAGGGCAGGAAAGGAACGTGTCTCACGCGGGAG
CTTCCAGTGAATTTACCCAGCCCCTCTCCTCTGCATCCCCACCCAGCAGA
GCTTTATCTCACACCCCGCCACTGCTACCGACTCACGCTGTCGAGAATGA
AGCTAGCGCTCTGGTGGCGAATCCACTGAACGAGTTCAGCCTCGAGGCGT
GCCGTACGGCGGTATCTGACCGGTGCTTGGAGGCTGCGTGCTCCTTGTTG
CACTTCGAGATTGCTGAGGTACTGTACTGTAATCACATGATATTATCGTT
GTATGTATACTGTATGTATCTATGTATGTATCTATCTATGTATGTATCTA
TCTATGTATTTTTCCGTGCCAGTGGGCAAAATTCGTCTTGAAAGAATGGA
AGAGACCAGGCGTTTGAAGTTGGTCCGTAAGGGTTGAGGCTTCTTTCCCA
GTCGAGCGTCGAGATGTCAATATACTATTATATAACGTCTAAAATAGACC
TTTCGGGTTCCAGAAGACGAAGAGTGAAAGGTAGTTGTAGGTATGGAGGT
TTTTTATGTGTCTGGTCTGGTCTGTCTGCCTGTGTCTGTCCATCTCAGCT
TTCTCTGCATCTCTCAGCGAGGGTATACCCTCCTTGTCGGGTCCTAAATA
TGAAATAGAAGATTGAAGATTACATTTCGACTTGTTTGTGTGGGCTATTG
GGTCTCCGTTTGTATTAACTGTTCAGAAAGTGCCATATGGTCGTATTGAT
GGTACTGTATATTACGAGAGAACGGCATCCCGCTACGTGCACGAGCACTC
TGCAGTACTTAGTGTGCTGTTTGTACGTGCCAAGATCTGTAAGATGCACA
AGATGTCTCTCTGTTGATGGTCCGATTGCACGCAACAATCCGAAGTTCAG
CAACCAGCAAACAGGCGATCGTGTTCGGCCGCACGGCAGCCTCTTTCACG
AGGCTGTGTATTTTCCAAGGGGGATACTGTGGATTCCACGATAATTGAAT
GTTGTACAGTGAAAGTCAACATAAATCCATTGAGCTGCGGAAAAGAGGTG
CCTGTGAGGGAAATCTAATGGTATACATTCATCAAGTAAAATGTATTTAC
GTCGACAAGGAATTACGAAATTACGCAGCTTGCAATGTGTGCTTTGCCCC
CCGCGCTTGCTAAATATTCCGAACGTGCCCAGCTGACAGTCCCAGGGTTT
GGGGAGGGGGGAGGGGGGGGAACGTGGGGGTAATGTAGTTTTGGATTGAC
CACGTGCGTTATGGGGCTGTCAGTCAGAACGAGCGAGCAGCTATCGATAT
CAGTTCTCGACGTGGGAGGTGAAGGTGGCCGCGTCCAGGAGCCGCAGGAT
GTGCTTCGTGGTCTACATAGATGCTGACCTGGTTTAGCCCTGCTTTCTGT
GGGTCAACGTTGCCGACAGAGGAAACGTAGCAAGCAGGACAGTATCTGCA
TACTTTGCAATGTTTGCACATACTGCGCCGCCTGGACGCGGCCGCTTGCT
CGCCCTAAAGCTGACTGCCCTGCAACGCAGGTCCGCATGTATGTCTCGCC
GTTCTTGCGGGCTGTGGATGTAGTCTGTGCCGCGCATCCCTCGTGCGCTG
CCTTCCTGACCAGTGCGTCGCATACGCTCCCGACTTTCGGGAGGCGGTCG
GTAGCACGGTCACCACCGTTCGAGTTTTACCTTTTTATCACTTGCGTGGT
TTCCGACGACATGTCCGCCGACGAACTTCTGCAAGGTCCTGCCTGGGGAG
TGGATCGCGGCTGCCACAGGCGATGACTCTACCGCTCGGCCTCCGGCGGC
CGCCAGCCGTCGTCGGCAAAGTCGTCAGTGGACTTCGATTCGCCGCCCAC
CGAGAGTTGCTACGGGTGACCTCGTTGTTCGCAATCGGCTTTCGGCGTTT
GGCCTCCTTGAAAAGAGAATGTTCATCTGTCAACTTGAAAAATATTTTTC
CAGGAGTCGAGGGTTAGGAAACGTAGGGTCAACTAACAACTCCAAGCGAA
AGCATATCTTGACGTGATGGGTAATTTAGCGTTGGACTTTCTGAGATGCA
CCTCGAGACACCACTAAAGTCGCAAGCCGGACACGGCACACTCTGCGGCG
CAGAATGTCTGACCTACTTGCAGGCGTTGTGTCTGACCCGGACGGGGTAA
AACCTTCCCGGGGAATGAGCTACCTTGCGGAGGGTGCTCGGGCTCTAGAC
CCTCCTTGGATGCTGCCCTCGGAATAGATGCCGAGCGCGTGGAACGTCAA
AACATGCAACGCGTGGTATTGTAACCCGGGCTCGCGCTGGCACAGCTCAA
CACGTCATGGTGAAGAACTGCTTCGCATGCTGCCCGCGGGTTATGAGGGT
ACAGGTGTGAGTAGAGGATAGCTTCGCTATGACGACCGGCTTCGTGGATG
TCGTCCTTTCCCCTCGGCGCCTTGCCGGATGCCACCCTGCCCAACTACAG
GGGATAACGGCCTACTAGTATATAGACCTTAGCTTCCCGGACCCACAAGC
AGCTTCGCACCTGTGGAGCGCCCGGCCGCCTGTCCGATAGCGCATGTACG
GATGGAGCCGCCACCGCCAGCCATACCGAAGCAATGAAACATAAGCACTC
TTTGCACGCGCGTCCCAGGAGTCCAGCTTTCGACACGCGGAGCTTATGTC
GCTCGTGGTCGAATCGTTCGGGTGCGACGGTGAGGAGGGGGGAGCCGGTT
TTTGAACCATCTGGCGACCAACGTCGCGCGTCGCAACGATTGTGCTGGTT
TTCTTGGACGTTAAAGCGTTGTTTCTTGAACACCAAGGCCTGCATCTTGT
CGTGTGTCTCTGCAGGTAGCGTATCACGGGGTGACAAAGGTTCATCCGGC
ACCGTGACGCATACCGACGAGCCAGCGGTTTATGGCCCTCGGTCGAGAGG
TTCTACCTCCGATAGTGGGGGCGTGGGGCCAGAGTCTCTTTGGTCGATAT
TTCGATCTTTACACTTGAATGCACCCCTCTCTTTGCCTTCTTGAACATCG
AGCAGTCAGCGAAAAAGCGGGAGCGTTCGATCAAGTCGTTAGCTCAAATC
GTTTGATTAAATCGAGTGAACATCTTGCAACATAAGGCTCATGATTTCCA
TGACATGACCAGCTCAATGCTTCTATAGTTTTCGCCATAGCGTCAGCGCG
GTAGTCTGTCTCGCGACACCATACAGCAGACCCAAAGACGAGATAATCAA
TCGGATTCAAGAAGTGTTCGCACCCCCCTCCCCCCCCGATGGAATATATA
CCTTCATTGGAATTTCACAGTTTGTGTATACTTGAACGAAGTAATATATC
TGAACGTGGGTTGTTCCACATCTCATTTCTCTTGCTATATTTTATCGTCG
CCGACCTCGGTCTTTATCCGCCCCGGATTTTTAATCGTCACCGGTATATT
TTTTTTCGGGTGTTTTTTTTTTTTTTTTCGGATGATCCGTCTGTGGATCA
CTTTTTGGGGCAGTGGCACAGTATTGGGAGTTCGTTTTGGTGTTTTTTTT
TGTTTTTAATGTTTGGTTGAACATTAATTAATAGGTCAGCCGCGCGGCTG
GCAGTCCGTATGATGTCCCTGGGACCCTTTTGTGCGAAACTGACGTGACC
CCAAGCGCAGCGAATCGTGACAGTTTCTAGAATAGAAGCCACTTGTAGTG
CGTACATTTAAACAAGAAATTGGAATATATATATATTGTGTATACATGTT
TTCCCTTTGGGACATGGAAAGCGAAGGGATTGCGAAATGAACAAGGAGGG
TCTGTGCCGAAGCATCAGACGGAAGCAAGCCACAGAGTATTGAGACAAGG
CCGCACGCATCATGTTTACGTGTGGTATGTGGGTCCTATTACTGTCCATA
CACGTTATTGTTATTTCACAAAGCCTGTAACGGCCCGGAAATGTCAACAT
GACACAGGATGACTGTGTCGGAATGTGATTGTCTACGGACAGTAGCACTA
AATTGTAGTCTAGGCCGGAGCATCATGACACAAACCCGCATTTCGTAGTT
CTTATTCTGGAATTGTGAAAATACAGTAAATTATGTTCGATGTTCTTCCT
GTATGTTAACTTCAGTATCATTTTGATCCCATCGAAAAAATATGAAAAGG
TTCGCAAAACGTTGAGCACCATAGTTTGATCGACACTATGTATAGTGATG
TCCAGTGGTGTTTGGTCCGCATATAGCACAGTTAAGGGTGTGCCTAACCC
CGATTTGAGGCCCATTTTTGGTGACCACGACCACGTAATAAAGTGCCGCA
TAAAAAAATAAAAAAAATAAAAAAGTGTTCGTTCCCTGACAGATAACGCC
ACCTACATCCCGCGAAATACTTGTATTCAGTGTCAGGTTTCCACGCACTT
GTAACCTGAATTATTCGATACGGGTTAGGAGTTGGCTCGTGAGACTCAAC
ACACACTTGGGTATGTGCCTAATCTAAGGCTTGATCTTCTGGTACTTTTA
ATCCGCATCACGAGAATTCCAAACGACCCTATAAATAGTGTTTTGTTTTT
TGCTACTTCCTCTGTATAGATGTTTCGTCCTCATGACTTTAAAGATACAT
AAGATGAACCCCTAGCTGTGGTTTTCGCGCACACGATGCAAAAAACCTCG
CCCCAATCGACGACCTTGCTGAGGGGTATATTTATTTACAAGATAGGCTA
TCAACACGAACAAGTACCCCAAACTACTCAAATTTCAAGTGACCCATCAA
AACCAAAAAAGCACCCAAAACTACTCGAATTTAGAGTGCAGGAGAGGGCA
TCATTTTCGAATGTAAATATGGTCCACACATCTGGTCGTTAGAGAACGAT
TGGGTGGTCGCAGGTGAGTGCTTCATGGGCACCCTTGAGACGGGGTCGTG
GCATGAGTGGCCGCATCAATATTTTGTACAATTCCGGCAGAGGCGACTTC
AACAATTATCCGATGCGCGAAGAAGCAGAGGGTGCTGCTGCTGCGTTAAC
CACGTTGTCCCCTTTTATCATAAGCTGGTGCAGCTCACAGGGGCATAATT
CGCGTTGCATATTGCAATGGTTGTAGCTCGTCGTTGTAACCGGTATTCTC
AGGGTCCCGAAGCACTCGAAACCTAGCTTGCTCGGCCTTTTCACCGTGCA
GCTGTGAGCTGCACCAGTACATTATCTTCGAGATCAGCTCTTTGGCAAAC
ATTGCGTGCAGGCGAATGGATGGATTGTTTATCATCACGTACGATTTATA
CCAATAGCTCATGCTCATGGAGGGCGTAGCTAGCAGGTTTTTCGGCGCCC
ATTCTCCTACCAGCCGTGCAACAACATCCCGACGTTCCTCGGGAAGATTC
GCGCCGTCCCAAATTACTATCCACCGCGTTTCGGTGTGCCGCACAAACGT
TTCCTGCCACCTCGCACCGATATTTGCGGAAACCAACCCCTTCATCTGAG
ACCATCCTATATTTGAAGAGTTGCTTCTGCTGCTGTTGTACCAGACAGAA
CCAAGCAATGCTACAAAATGTTGATGCGACCACTCATGCCATGATCCCAT
GCCAAGGGTGCCCATGAAGCACTCACTATCGATCCCTGACGTCACGGCGA
TGTGGGGAACATGCAGGAGACGACCAATGCGTGTTGCATAGATGGTGGGA
GGTGCGATCGCTGCTGTTGCTTTTACTGCTGTATGATGGCATGTCGTAGC
AGCGGTTGGGAGCGGCTGCTCTTGCTTGCGCTCGGCCATTTCCCCAGTGC
TGTCCGGCCACTGGATGCGGTCTACTCGGGCTGGTGTGGGATGCCGTGCG
TGCTGTGTGCGCAGGCGCTACTGCTGTTGCACTCAGAGGGAGGCAGTGAG
AGGCAGCTCTCGCATGTGGAGCAGTTTCTCCGTTCTGTCTTTAGTTCGTC
AGTCTTTCTGATGGCTTCTTCGGGGTTGTTCATGTTTTCGTATCTTTGGG
ACATCCTGCCTCTTTCGGGACTATTCATTTTTTAGTGTGTTTAGTATACA
CTGGTTCTCTCGGTGTTTATTATGATTATTTTTATTATTGTTAGGTGACG
TTGGGTCTGTCTCTCCATGGTTATGTGTGTGTGTGTGTGTGTGTGTGTGC
TTTAGTGAAGTCAACTTTTTTTTTTCTTTATTTGGCCCAAACCCTCTAAA
AACCCGGCAGTAAATATGTGGCCGTTGCGAAGAATTTCGTCGTCTTTGCG
ACACAATTACCGCACTATAGAGGGCTTAGGTGCACCGGTAACAGTAGTAG
TTAGTCTCTACATGGCACATGTGCAGAGCCACTATATTATTGCTGGTGTC
TTGGCAATGTATCCCAAATTTTCCGCGGGCCTCCTGTTGCTGCCCTCGCT
TTTGGAGTCCCTGCCGTCACTTGTGCGTCAGTCACGGGTCAACCATGAAC
TAACTCATCCAGCGTACACATTTACCACCGGCGTTGCCCGCACACGCTCG
CCGCTGGAAGACGCGAGATATACCTCCGGTCGCGAATCTGGGGCGCGAGA
CATTTTCAAACGAAGTTACATGTGTTTCCAGTTATATAGGAATTACTGAA
TTTTTCGAGACTTTTGTTCGATCATCTCTAGCCGTACTACCGAAGAGGGA
CATTTTCTGTTCATGATATTTGAAGCACAGACAACCGGCACCGACCAATC
GTTCCCTACGGCACATCCACCACCTGCCTCAAAATGGTCATCACTTTCGT
AAAGTGATTGGAAAAGCAAAGTTTAACGAAGTGTTTTTTTTTGTTTTTTT
TGTCGTCAGGTTTGGACGTACACGGGCGACTACAGCGCTGCCGAAGGAAA
AGCGGTGGAGCCTATGCTCCTGCACGTCTACACCAGCCCCGCCACGATCG
AAAGCTTCGGTGGCAAGCTCAAGGGAGTCTGGTCTGGGGGCGGAGAGGGG
GCGCGCCACTCGCTATCGCCCTCGGTTCGTTCTCCCTGCACATTGTCGTG
GTCGAGAACAGAGTACGGTAACCGTTTGCTTCATCCTCCCCCGCGAATAT
CGTACGGTACTGTGTACTACAGTGCATTATGTAGGTACGGCGTAGATTTT
ATCATGGCCGGTAAAAACGAACGAATCAACCATTTTCCTTTCTTCTCAAC
TGCGTCGATAGAGATACTCTCGAACTAAAAAAAAATACGGCTTTATTTTA
TGTGGAACTCTTCAGTGAAATACGAAGTTTTGTCATTAGACAGATCTTGT
AATATTGTTTTGAATAAAATGTGGGAAAAAAAACAACAAAACAACAACAA
CAAAAAAACGCCAACCTTTGATGTTTAGTGCAAAAAAAAAAAAAAGCGTT
ACCATCCGTCATTGAGTATTTTTTAATTGTTTTGTGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig9000:1787..9223- >mRNA_H-paniculata_contig9000.16857.1 ID=mRNA_H-paniculata_contig9000.16857.1|Name=mRNA_H-paniculata_contig9000.16857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig9000:1787..9223- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAGTGCTCCTCTTTCGTCGCTGCCTCCACCAGGGCAGGAAAGGAACGT GTCTCACGCGGGAGCTTCCAGTGAATTTACCCAGCCCCTCTCCTCTGCAT CCCCACCCAGCAGAGCTTTATCTCACACCCCGCCACTGCTACCGACTCAC GCTGTCGAGAATGAAGCTAGCGCTCTGGTGGCGAATCCACTGAACGAGTT CAGCCTCGAGGCGTGCCGTACGGCGGTATCTGACCGGTGCTTGGAGGCTG CGTGCTCCTTGTTGCACTTCGAGATTGCTGAGATGAGTGCTCCTCTTTCG TCGCTGCCTCCACCAGGGCAGGAAAGGAACGTGTCTCACGCGGGAGCTTC CAGTGAATTTACCCAGCCCCTCTCCTCTGCATCCCCACCCAGCAGAGCTT TATCTCACACCCCGCCACTGCTACCGACTCACGCTGTCGAGAATGAAGCT AGCGCTCTGGTGGCGAATCCACTGAACGAGTTCAGCCTCGAGGCGTGCCG TACGGCGGTATCTGACCGGTGCTTGGAGGCTGCGTGCTCCTTGTTGCACT TCGAGATTGCTGAGGTTTGGACGTACACGGGCGACTACAGCGCTGCCGAA GGAAAAGCGGTGGAGCCTATGCTCCTGCACGTCTACACCAGCCCCGCCAC GATCGAAAGCTTCGGTGGCAAGCTCAAGGGAGTCTGGTCTGGGGGCGGAG AGGGGGCGCGCCACTCGCTATCGCCCTCGGTTCGTTCTCCCTGCACATTG TCGTGGTCGAGAACAGAGTACGGTAACCGTTTGCTTCATCCTCCCCCGCG AATATCGTACGGTACTGTGTACTACAGTGCATTATGTAGGTACGGCGTAG ATTTTATCATGGCCGGTAAAAACGAACGAATCAACCATTTTCCTTTCTTC TCAACTGCGTCGATAGAGATACTCTCGAACTAAGTTTGGACGTACACGGG CGACTACAGCGCTGCCGAAGGAAAAGCGGTGGAGCCTATGCTCCTGCACG TCTACACCAGCCCCGCCACGATCGAAAGCTTCGGTGGCAAGCTCAAGGGA GTCTGGTCTGGGGGCGGAGAGGGGGCGCGCCACTCGCTATCGCCCTCGGT TCGTTCTCCCTGCACATTGTCGTGGTCGAGAACAGAGTACGGTAACCGTT TGCTTCATCCTCCCCCGCGAATATCGTACGGTACTGTGTACTACAGTGCA TTATGTAGGTACGGCGTAGATTTTATCATGGCCGGTAAAAACGAACGAAT CAACCATTTTCCTTTCTTCTCAACTGCGTCGATAGAGATACTCTCGAACT AA back to top
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