mRNA_H-paniculata_contig90.16851.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig90.16851.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.580e-31 Identity = 236/419 (56.32%), Postives = 267/419 (63.72%), Query Frame = 3
Query: 414 DVKSEESEIHNFAQAGDVEGVRRCLVNGY-RVDEQDELGCTPVHLAGAMGHTNVVRFLVQEHGAAXXXXXXXXXXXXXXXXXXXXXDMVVLLLRLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHGADPIARDSNGMQPSDAVGARRPMDQGARLELLENLERYQLGEYAGMRAPTSSMSSMRRMWMERDNDNTSPSQGQ---GNLDNSA-----------------------------------------AIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRH---GTSAEWEMGNAVAGRLDEMRARELGASLRATVQENEAMRRNLE 1526
+VK EESEIH++AQAGDVE VRRCL+ G+ +VDE DELGCTPVHLAGAMGHTNVV+ LV+EH AA XXXXXXXXXXXXXXXX LLRLGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ADP A+D++G Q D VGA R + QG + +++ LERYQ+GEY RAP SS S+R++W +RD+ ++P G+L + A + G GR G S W +G AVAGRL+ MRARELGASLRA VQENEAM+R +E
Sbjct: 75 EVKVEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHTNVVKLLVEEHRAAVDARDXXXXXXXXXXXXXXXXXXXXXLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSAKDAHGKQAVDMVGAGRRIPQGLKFDIINTLERYQMGEYGIARAPLSSTRSLRQIWRDRDSGESTPRASTARAGSLPSGAGGEAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAGGEGGGPLSVRGAAMRHSSRGFSEGDGRGNGGGRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVE 493
BLAST of mRNA_H-paniculata_contig90.16851.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 2.690e-17 Identity = 111/248 (44.76%), Postives = 137/248 (55.24%), Query Frame = 3
Query: 996 ADPIARDSNGMQPSDAVGARRPMDQGARLELLENLERYQLGEYAGMRAPTSSMSSMRRMWMERDNDNTSPSQGQGNLDN--SAAIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG-------------------------------RHGT---------------------SAEWEMGNAVAGRLDEMRARELGASLRATVQENEAMRRNLEFAQEQVRVLQQKVSQQA 1577
ADP A+D++G Q D VGA R + QG R +++ LERYQ+GEYA RAP SS S+R+MW +RD+ ++P + S+A+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S RH + S W +G AVAGRL+ MRARELGASLRA VQENEAM+R +E E++R LQQK+SQQ+
Sbjct: 148 ADPSAKDAHGKQAIDMVGAGRRIPQGLRFDIINTLERYQMGEYAIARAPLSSTRSLRQMWRDRDSGESTPRASTARAGSLPSSAVGGAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAGGEGGGPLSVRGAAMRHSSRGFSEGDXXXXXXXXXXXXXRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQS 395 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig90.16851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig90.16851.1 >prot_H-paniculata_contig90.16851.1 ID=prot_H-paniculata_contig90.16851.1|Name=mRNA_H-paniculata_contig90.16851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=503bp MSAPELPGSFTNQSEERIGREAPPEARPPAESRAEEKQEEMLEREAGAHEback to top mRNA from alignment at H-paniculata_contig90:16752..32381+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig90.16851.1 ID=mRNA_H-paniculata_contig90.16851.1|Name=mRNA_H-paniculata_contig90.16851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15630bp|location=Sequence derived from alignment at H-paniculata_contig90:16752..32381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig90:16752..32381+ >mRNA_H-paniculata_contig90.16851.1 ID=mRNA_H-paniculata_contig90.16851.1|Name=mRNA_H-paniculata_contig90.16851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3018bp|location=Sequence derived from alignment at H-paniculata_contig90:16752..32381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |