mRNA_H-paniculata_contig8992.16844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8992.16844.1
Unique NamemRNA_H-paniculata_contig8992.16844.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 192 bits (487), Expect = 1.000e-52
Identity = 104/226 (46.02%), Postives = 139/226 (61.50%), Query Frame = 1
Query:   34 LELVHTDIAGPVDKP-FEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTE-AFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
            LELVH DI GP   P F  + + I+FVDD+S M  VY L  KSEA    KQF+      S   +K LR+D+GGEFT   F ++C  NGIK+E +A YTPQQNGVAE   R++ +M RS +   ++  ++WAEA  TAV+ LNR+PT+   + TP+E WH   PK+D  ++FGCT Y    SQ+R K D+K     F G S     YR+ +P  KS+ +SR+  FDE
Sbjct:  183 LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 408          
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 192 bits (487), Expect = 1.810e-52
Identity = 104/226 (46.02%), Postives = 139/226 (61.50%), Query Frame = 1
Query:   34 LELVHTDIAGPVDKP-FEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTE-AFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
            LELVH DI GP   P F  + + I+FVDD+S M  VY L  KSEA    KQF+      S   +K LR+D+GGEFT   F ++C  NGIK+E +A YTPQQNGVAE   R++ +M RS +   ++  ++WAEA  TAV+ LNR+PT+   + TP+E WH   PK+D  ++FGCT Y    SQ+R K D+K     F G S     YR+ +P  KS+ +SR+  FDE
Sbjct:  420 LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 645          
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 192 bits (487), Expect = 1.820e-52
Identity = 97/231 (41.99%), Postives = 142/231 (61.47%), Query Frame = 1
Query:   19 QTTERLELVHTDIAGPVDKP-FEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTEA-FRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
            + TE+L+LVHTD+ GP+      G  + ++F+DDY+ M  V+ L+ KS+      +F+  +   +  Q+KRLRSD G E+T   F++FC + GI+ + +  YTPQQNGV+E   R+V +M R  +    + +++WAEA  T+VY LN  PT+     TP+E WH  TP ++HL+VFGC  Y +    +R KLD K+ VG F G S     YRIYNP  K + +SRN +FDE
Sbjct:  450 RATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI)

HSP 1 Score: 187 bits (476), Expect = 6.980e-52
Identity = 99/232 (42.67%), Postives = 146/232 (62.93%), Query Frame = 1
Query:   19 QTTERLELVHTDIAGPV-DKPFEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTEA-FRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKA----WVG-CFWGTSYRIYNPGKKSVQLSRNARFDEE 693
            + TE LELVH D+ GP+  +   G  + ++FVDDYS M  VY L+ KSEA     +F+  + K     +K LR+D+GGEFT   F Q+C ++GI +E +A YTP+QNGVAE   R++ +M RS + +  +  ++WAEA  TAVY +N +PT+     TPYE W    P ++HL++FGC VYV+  + +R KL++K+    ++G C    +YR+YNP    V +SRN  F+EE
Sbjct:  344 RATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPATGKVIVSRNTVFNEE 575          
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR)

HSP 1 Score: 189 bits (479), Expect = 1.820e-51
Identity = 103/232 (44.40%), Postives = 139/232 (59.91%), Query Frame = 1
Query:   19 QTTERLELVHTDIAGPVDKPFEG-RHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTE-AFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDEE 693
            + +E+LELVH DI GP+    EG + + I F+DDYS    VY L +KS+A    K F+  + K +   IK LR+D+GGEFT   F+++C  NGIK++ +AAYTPQQNGVAE   R+V  M RS +   N+ R +WAEA   A Y LNR PT    E TP E W    P + HLRVFGC  Y      +R KL+DK+     +G S     YR+Y+P  K + +SR+  F+E+
Sbjct:  183 RASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEED 414          
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU)

HSP 1 Score: 187 bits (475), Expect = 7.840e-51
Identity = 101/232 (43.53%), Postives = 138/232 (59.48%), Query Frame = 1
Query:   19 QTTERLELVHTDIAGPVDKPFEG-RHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTE-AFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDEE 693
            + +E+LELVH DI GP+    EG + + I F+DDYS    VY L +KS+A    K F+  + K +   IK LR+D+GGEFT   F+++C  NGIK++ + AYTPQQNGVAE   R+V  M RS +   N+ R +W EA   A Y LNR PT    E TP E W+   P + HLRVFGC  Y      +R KL+DK+     +G S     YR+Y+P  K + +SR+  F+E+
Sbjct:  487 RASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEED 718          
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF)

HSP 1 Score: 184 bits (468), Expect = 6.520e-50
Identity = 98/231 (42.42%), Postives = 136/231 (58.87%), Query Frame = 1
Query:   19 QTTERLELVHTDIAGPVDKPFEGR-HFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEF-TEAFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
            Q    LELVH+DI GP+  P  GR  + I+F+DDY+ M  +Y L  KSEA     QF+    + S F IK LR+D+GGE+ +  F ++C  NGIK++ + +YTPQQNGVAE   R++ +M RS +    +   YWAEA  TA Y +NR+PT+  +  TPYE WH   P +DH ++FG   Y +  SQ+R K D K     F G S     YR+ +P    + +SR+  FDE
Sbjct:  473 QAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTFKIIVSRDVIFDE 703          
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF)

HSP 1 Score: 184 bits (466), Expect = 7.620e-50
Identity = 97/231 (41.99%), Postives = 136/231 (58.87%), Query Frame = 1
Query:   19 QTTERLELVHTDIAGPVDKPFEGR-HFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEF-TEAFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
            Q    LELVH+DI GP+  P  GR  + I+F+DDY+ M  +Y L  KSEA     QF+    + S F IK LR+D+GGE+ +  F ++C  NGIK++ + +YTPQQNGVAE   R++ +M R+ +    +   YWAEA  TA Y +NR+PT+  +  TPYE WH   P +DH ++FG   Y +  SQ+R K D K     F G S     YR+ +P    + +SR+  FDE
Sbjct:  503 QAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARNMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTLKIIVSRDVIFDE 733          
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A151QYN6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QYN6_CAJCA)

HSP 1 Score: 178 bits (452), Expect = 1.220e-49
Identity = 100/232 (43.10%), Postives = 134/232 (57.76%), Query Frame = 1
Query:   19 QTTERLELVHTDIAGP-VDKPFEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEF-TEAFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDEE 693
            + T RLEL+H+DI GP        R + I F+DD+S    V+ L  K+EA    K+F   + K S   I  LR+D+GGEF +  F +FC  NGI+++ +AAYTPQQNGVAE   R++  M R+ +  A + +S+W EA R  VY LNR PT    + TP E W S  P + HL+VFGC  YV      R KLDDK+    F G S     YR+YNP  K + +SR+  F E+
Sbjct:  150 RATRRLELIHSDICGPSTPTSNSNRRYFITFIDDFSRKTWVFFLCEKAEAFETFKRFRLMVEKESNCVISCLRTDRGGEFNSNDFNEFCTMNGIRRQLTAAYTPQQNGVAERKNRTIMDMVRTMLCEAKIHKSFWPEAVRWTVYLLNRCPTVAVKDLTPEEAWSSIKPSVRHLKVFGCIAYVHIADANRKKLDDKSSKCVFLGVSEESKAYRLYNPSTKKIVISRDVIFAED 381          
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 183 bits (465), Expect = 1.650e-49
Identity = 97/232 (41.81%), Postives = 146/232 (62.93%), Query Frame = 1
Query:   19 QTTERLELVHTDIAGPVDKPF-EGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEF-TEAFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDEE 693
            ++T+ L+LVHTDI GP++     G+ + + F+DD+S     Y L  KSE     K+F+ ++ + S  ++  LRSD+GGE+ +  F ++C E GIK++ +AAYTPQQNGVAE   RSV  MTR  +   ++ R +W EA + AVY LNR+P++  N+ TP EKW S  P ++HLR+FG   Y +   Q+R KLD+K+     +G S     YR+Y+P    + +SR+ +FDEE
Sbjct:  491 KSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDEE 722          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y1QWW3_PRUDU1.000e-5246.02Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R9H3_PRUDU1.810e-5246.02Transposable element protein (Fragment) n=1 Tax=Pr... [more]
A0A151T355_CAJCA1.820e-5241.99Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7BCE9_9LAMI6.980e-5242.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3KY79_TRIPR1.820e-5144.40Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A2Z6P4L8_TRISU7.840e-5143.53Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A8J5F3N7_ZINOF6.520e-5042.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5GP83_ZINOF7.620e-5041.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A151QYN6_CAJCA1.220e-4943.10Retrovirus-related Pol polyprotein from transposon... [more]
Q9C7Y1_ARATH1.650e-4941.81Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8992contigH-paniculata_contig8992:8185..8877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score148.3
Seed ortholog evalue3.7e-33
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size693
Cds size567
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.5068285-CDS-H-paniculata_contig8992:8184..87511622931122.5068285-CDS-H-paniculata_contig8992:8184..8751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8992 8185..8751 -
1691481600.3283937-CDS-H-paniculata_contig8992:8184..87511691481600.3283937-CDS-H-paniculata_contig8992:8184..8751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8992 8185..8751 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.5222623-UTR-H-paniculata_contig8992:8751..88771622931122.5222623-UTR-H-paniculata_contig8992:8751..8877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8992 8752..8877 -
1691481600.3428206-UTR-H-paniculata_contig8992:8751..88771691481600.3428206-UTR-H-paniculata_contig8992:8751..8877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8992 8752..8877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8992.16844.1prot_H-paniculata_contig8992.16844.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8992 8185..8751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8992.16844.1

>prot_H-paniculata_contig8992.16844.1 ID=prot_H-paniculata_contig8992.16844.1|Name=mRNA_H-paniculata_contig8992.16844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp
MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTEAFRQF
CAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEA
ARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQ
RCKLDDKAWVGCFWGTSYRIYNPGKKSVQLSRNARFDEE
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mRNA from alignment at H-paniculata_contig8992:8185..8877-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8992.16844.1 ID=mRNA_H-paniculata_contig8992.16844.1|Name=mRNA_H-paniculata_contig8992.16844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at H-paniculata_contig8992:8185..8877- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAGTGTCGGGAAGAGCAAACAACGGAGCGACTGGAGCTAGTACATAC TGACATCGCAGGACCGGTAGACAAACCTTTCGAGGGACGCCATTTCGCCA TTATCTTCGTGGACGACTACAGTTGAATGCGTAAGGTCTACGCCCTGAGA CACAAATCAGAGGCGGTATGGGCTCTGAAACAGTTCGAGCAGGACATCAC GAAAGCAAGCAGGTTCCAAATAAAACGTCTTCGGTCAGATCAAGGAGGAG AATTTACGGAAGCGTTCCGACAATTTTGTGCGGAAAATGGCATAAAGCAA GAATTTTCTGCTGCCTACACGCCGCAGCAGAATGGTGTGGCGGAGAGCAG CTGGCGTAGCGTTTTCAAGATGACCCGAAGTAAGATGACCACCGCCAACA TGGACCGCAGTTATTGGGCGGAGGCGGCGCGCACGGCTGTGTACTACCTA AATCGCGCCCCGACGCGACCGCACAACGAAGGGACGCCGTATGAGAAATG GCACAGCACGACACCAAAGCTTGACCACCTTCGTGTCTTCGGCTGCACGG TGTACGTGATGTTCCAGTCGCAGCAGAGATGCAAACTCGATGACAAAGCA TGGGTGGGGTGTTTCTGGGGTACGAGTTATCGCATATATAACCCGGGAAA AAAGAGCGTCCAGTTGAGCAGGAACGCAAGATTTGATGAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8992:8185..8877-

>mRNA_H-paniculata_contig8992.16844.1 ID=mRNA_H-paniculata_contig8992.16844.1|Name=mRNA_H-paniculata_contig8992.16844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig8992:8185..8877- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTAAGGTCTACGCCCTGAGACACAAATCAGAGGCGGTATGGGCTCT
GAAACAGTTCGAGCAGGACATCACGAAAGCAAGCAGGTTCCAAATAAAAC
GTCTTCGGTCAGATCAAGGAGGAGAATTTACGGAAGCGTTCCGACAATTT
TGTGCGGAAAATGGCATAAAGCAAGAATTTTCTGCTGCCTACACGCCGCA
GCAGAATGGTGTGGCGGAGAGCAGCTGGCGTAGCGTTTTCAAGATGACCC
GAAGTAAGATGACCACCGCCAACATGGACCGCAGTTATTGGGCGGAGGCG
GCGCGCACGGCTGTGTACTACCTAAATCGCGCCCCGACGCGACCGCACAA
CGAAGGGACGCCGTATGAGAAATGGCACAGCACGACACCAAAGCTTGACC
ACCTTCGTGTCTTCGGCTGCACGGTGTACGTGATGTTCCAGTCGCAGCAG
AGATGCAAACTCGATGACAAAGCATGGGTGGGGTGTTTCTGGGGTACGAG
TTATCGCATATATAACCCGGGAAAAAAGAGCGTCCAGTTGAGCAGGAACG
CAAGATTTGATGAAGAGATGCGTAAGGTCTACGCCCTGAGACACAAATCA
GAGGCGGTATGGGCTCTGAAACAGTTCGAGCAGGACATCACGAAAGCAAG
CAGGTTCCAAATAAAACGTCTTCGGTCAGATCAAGGAGGAGAATTTACGG
AAGCGTTCCGACAATTTTGTGCGGAAAATGGCATAAAGCAAGAATTTTCT
GCTGCCTACACGCCGCAGCAGAATGGTGTGGCGGAGAGCAGCTGGCGTAG
CGTTTTCAAGATGACCCGAAGTAAGATGACCACCGCCAACATGGACCGCA
GTTATTGGGCGGAGGCGGCGCGCACGGCTGTGTACTACCTAAATCGCGCC
CCGACGCGACCGCACAACGAAGGGACGCCGTATGAGAAATGGCACAGCAC
GACACCAAAGCTTGACCACCTTCGTGTCTTCGGCTGCACGGTGTACGTGA
TGTTCCAGTCGCAGCAGAGATGCAAACTCGATGACAAAGCATGGGTGGGG
TGTTTCTGGGGTACGAGTTATCGCATATATAACCCGGGAAAAAAGAGCGT
CCAGTTGAGCAGGAACGCAAGATTTGATGAAGAG
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