mRNA_H-paniculata_contig8992.16844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU) HSP 1 Score: 192 bits (487), Expect = 1.000e-52 Identity = 104/226 (46.02%), Postives = 139/226 (61.50%), Query Frame = 1
Query: 34 LELVHTDIAGPVDKP-FEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTE-AFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
LELVH DI GP P F + + I+FVDD+S M VY L KSEA KQF+ S +K LR+D+GGEFT F ++C NGIK+E +A YTPQQNGVAE R++ +M RS + ++ ++WAEA TAV+ LNR+PT+ + TP+E WH PK+D ++FGCT Y SQ+R K D+K F G S YR+ +P KS+ +SR+ FDE
Sbjct: 183 LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 408
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU) HSP 1 Score: 192 bits (487), Expect = 1.810e-52 Identity = 104/226 (46.02%), Postives = 139/226 (61.50%), Query Frame = 1
Query: 34 LELVHTDIAGPVDKP-FEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTE-AFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
LELVH DI GP P F + + I+FVDD+S M VY L KSEA KQF+ S +K LR+D+GGEFT F ++C NGIK+E +A YTPQQNGVAE R++ +M RS + ++ ++WAEA TAV+ LNR+PT+ + TP+E WH PK+D ++FGCT Y SQ+R K D+K F G S YR+ +P KS+ +SR+ FDE
Sbjct: 420 LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 645
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 192 bits (487), Expect = 1.820e-52 Identity = 97/231 (41.99%), Postives = 142/231 (61.47%), Query Frame = 1
Query: 19 QTTERLELVHTDIAGPVDKP-FEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTEA-FRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
+ TE+L+LVHTD+ GP+ G + ++F+DDY+ M V+ L+ KS+ +F+ + + Q+KRLRSD G E+T F++FC + GI+ + + YTPQQNGV+E R+V +M R + + +++WAEA T+VY LN PT+ TP+E WH TP ++HL+VFGC Y + +R KLD K+ VG F G S YRIYNP K + +SRN +FDE
Sbjct: 450 RATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI) HSP 1 Score: 187 bits (476), Expect = 6.980e-52 Identity = 99/232 (42.67%), Postives = 146/232 (62.93%), Query Frame = 1
Query: 19 QTTERLELVHTDIAGPV-DKPFEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTEA-FRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKA----WVG-CFWGTSYRIYNPGKKSVQLSRNARFDEE 693
+ TE LELVH D+ GP+ + G + ++FVDDYS M VY L+ KSEA +F+ + K +K LR+D+GGEFT F Q+C ++GI +E +A YTP+QNGVAE R++ +M RS + + + ++WAEA TAVY +N +PT+ TPYE W P ++HL++FGC VYV+ + +R KL++K+ ++G C +YR+YNP V +SRN F+EE
Sbjct: 344 RATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPATGKVIVSRNTVFNEE 575
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR) HSP 1 Score: 189 bits (479), Expect = 1.820e-51 Identity = 103/232 (44.40%), Postives = 139/232 (59.91%), Query Frame = 1
Query: 19 QTTERLELVHTDIAGPVDKPFEG-RHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTE-AFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDEE 693
+ +E+LELVH DI GP+ EG + + I F+DDYS VY L +KS+A K F+ + K + IK LR+D+GGEFT F+++C NGIK++ +AAYTPQQNGVAE R+V M RS + N+ R +WAEA A Y LNR PT E TP E W P + HLRVFGC Y +R KL+DK+ +G S YR+Y+P K + +SR+ F+E+
Sbjct: 183 RASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEED 414
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU) HSP 1 Score: 187 bits (475), Expect = 7.840e-51 Identity = 101/232 (43.53%), Postives = 138/232 (59.48%), Query Frame = 1
Query: 19 QTTERLELVHTDIAGPVDKPFEG-RHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTE-AFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDEE 693
+ +E+LELVH DI GP+ EG + + I F+DDYS VY L +KS+A K F+ + K + IK LR+D+GGEFT F+++C NGIK++ + AYTPQQNGVAE R+V M RS + N+ R +W EA A Y LNR PT E TP E W+ P + HLRVFGC Y +R KL+DK+ +G S YR+Y+P K + +SR+ F+E+
Sbjct: 487 RASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEED 718
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF) HSP 1 Score: 184 bits (468), Expect = 6.520e-50 Identity = 98/231 (42.42%), Postives = 136/231 (58.87%), Query Frame = 1
Query: 19 QTTERLELVHTDIAGPVDKPFEGR-HFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEF-TEAFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
Q LELVH+DI GP+ P GR + I+F+DDY+ M +Y L KSEA QF+ + S F IK LR+D+GGE+ + F ++C NGIK++ + +YTPQQNGVAE R++ +M RS + + YWAEA TA Y +NR+PT+ + TPYE WH P +DH ++FG Y + SQ+R K D K F G S YR+ +P + +SR+ FDE
Sbjct: 473 QAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTFKIIVSRDVIFDE 703
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF) HSP 1 Score: 184 bits (466), Expect = 7.620e-50 Identity = 97/231 (41.99%), Postives = 136/231 (58.87%), Query Frame = 1
Query: 19 QTTERLELVHTDIAGPVDKPFEGR-HFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEF-TEAFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDE 690
Q LELVH+DI GP+ P GR + I+F+DDY+ M +Y L KSEA QF+ + S F IK LR+D+GGE+ + F ++C NGIK++ + +YTPQQNGVAE R++ +M R+ + + YWAEA TA Y +NR+PT+ + TPYE WH P +DH ++FG Y + SQ+R K D K F G S YR+ +P + +SR+ FDE
Sbjct: 503 QAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARNMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTLKIIVSRDVIFDE 733
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: A0A151QYN6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QYN6_CAJCA) HSP 1 Score: 178 bits (452), Expect = 1.220e-49 Identity = 100/232 (43.10%), Postives = 134/232 (57.76%), Query Frame = 1
Query: 19 QTTERLELVHTDIAGP-VDKPFEGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEF-TEAFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDEE 693
+ T RLEL+H+DI GP R + I F+DD+S V+ L K+EA K+F + K S I LR+D+GGEF + F +FC NGI+++ +AAYTPQQNGVAE R++ M R+ + A + +S+W EA R VY LNR PT + TP E W S P + HL+VFGC YV R KLDDK+ F G S YR+YNP K + +SR+ F E+
Sbjct: 150 RATRRLELIHSDICGPSTPTSNSNRRYFITFIDDFSRKTWVFFLCEKAEAFETFKRFRLMVEKESNCVISCLRTDRGGEFNSNDFNEFCTMNGIRRQLTAAYTPQQNGVAERKNRTIMDMVRTMLCEAKIHKSFWPEAVRWTVYLLNRCPTVAVKDLTPEEAWSSIKPSVRHLKVFGCIAYVHIADANRKKLDDKSSKCVFLGVSEESKAYRLYNPSTKKIVISRDVIFAED 381
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH) HSP 1 Score: 183 bits (465), Expect = 1.650e-49 Identity = 97/232 (41.81%), Postives = 146/232 (62.93%), Query Frame = 1
Query: 19 QTTERLELVHTDIAGPVDKPF-EGRHFAIIFVDDYS*MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEF-TEAFRQFCAENGIKQEFSAAYTPQQNGVAESSWRSVFKMTRSKMTTANMDRSYWAEAARTAVYYLNRAPTRPHNEGTPYEKWHSTTPKLDHLRVFGCTVYVMFQSQQRCKLDDKAWVGCFWGTS-----YRIYNPGKKSVQLSRNARFDEE 693
++T+ L+LVHTDI GP++ G+ + + F+DD+S Y L KSE K+F+ ++ + S ++ LRSD+GGE+ + F ++C E GIK++ +AAYTPQQNGVAE RSV MTR + ++ R +W EA + AVY LNR+P++ N+ TP EKW S P ++HLR+FG Y + Q+R KLD+K+ +G S YR+Y+P + +SR+ +FDEE
Sbjct: 491 KSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDEE 722 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8992.16844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8992.16844.1 >prot_H-paniculata_contig8992.16844.1 ID=prot_H-paniculata_contig8992.16844.1|Name=mRNA_H-paniculata_contig8992.16844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp MRKVYALRHKSEAVWALKQFEQDITKASRFQIKRLRSDQGGEFTEAFRQFback to top mRNA from alignment at H-paniculata_contig8992:8185..8877- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8992.16844.1 ID=mRNA_H-paniculata_contig8992.16844.1|Name=mRNA_H-paniculata_contig8992.16844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at H-paniculata_contig8992:8185..8877- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8992:8185..8877- >mRNA_H-paniculata_contig8992.16844.1 ID=mRNA_H-paniculata_contig8992.16844.1|Name=mRNA_H-paniculata_contig8992.16844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig8992:8185..8877- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |