|
|
Homology
BLAST of mRNA_H-paniculata_contig8942.16812.1 vs. uniprot
Match: D8LPQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ1_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 1.150e-18 Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 3
Query: 36 MARKDHPEALTLERFASGKDGQANAFKKKKQANKRKLFEKAQLKRQYAKLLKKEAQAA 209
MARK+ P+ALTLE+FA+GKDG+ANAFKKKKQA KRKLFEKAQLKRQYAKLLKKEA A
Sbjct: 1 MARKELPQALTLEKFAAGKDGRANAFKKKKQAKKRKLFEKAQLKRQYAKLLKKEAVTA 58
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 783 |
| Cds size | 675 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8942.16812.1 >prot_H-paniculata_contig8942.16812.1 ID=prot_H-paniculata_contig8942.16812.1|Name=mRNA_H-paniculata_contig8942.16812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MARKDHPEALTLERFASGKDGQANAFKKKKQANKRKLFEKAQLKRQYAKL
LKKEAQAADESRHGQTGDGEPSQQAHTAEDAGPGGGFVFQPHAMAGAGER
KIGVRAIDTKELEGGHDEIRPKKRGGGHEAGDEQAGGSRSQEKQKRKRQG
HRPDPFHEAKAKADQKRREAKERQNDRERQHQEKEGRVKKRKKQHALLSK
RTRVGQPVMKHTMQHLLEKIKAQS* back to topmRNA from alignment at H-paniculata_contig8942:2226..9396+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8942.16812.1 ID=mRNA_H-paniculata_contig8942.16812.1|Name=mRNA_H-paniculata_contig8942.16812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7171bp|location=Sequence derived from alignment at H-paniculata_contig8942:2226..9396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTTTGTCGCTCTCTTGAACTCACCATCGTAAACATGGCGCGAAAGGAT
CACCCCGAAGCGTTGACACTTGAACGATTTGCCTCTGGGAAGGATGGTCA
GGCTAATGCGTTCAAGAAAAAGAAGCAAGGTGATACCCGTTGGTACAATT
CGAGCCAGCAGCTTCCCCAGTACAGGCACCGCTGAGACTTTAATCAGTAG
AAACAGTACCGTATAGCCGTACCTGCACCGCTGTGCCGCCAGACAGCTAG
CTGCCCACCTGTCGTGCATTAATTATGCAGCGTGGTATTGCCCTTGTGGT
ATAGGAGTGCATCGCTGTCAGCTCAGTTTTTCCTTCGTCAGTATGTTTGA
TCGGATGCCGACTTACGTGTGTTCTGGAAGAAATGCTAATGCCACAAACT
ATTGTTAAACGATTTGGGTGCACGTTGCCATCTCACCCCTCAAGTCCCCG
ATGGAGCATCAGGCAAAGAAGGCCATATTTAGTCATTTTGTCTGGCACTT
CGCCTATCACATTCTTGATGGCGTGTTGTTTGGTTTACCTTGGTGTGTAT
ATATATAATAAATTGATGGAGGCATCATATTAGAACAGCAGGTGTACATC
CGAAAGATGCGACGTGACTCTCTACTGTTCAGTACAAATATCAGAAAAGG
TTGAGGTTTTCCCCTGGTCTCCTCGGTATCTTGAAGAAGAGAGAGCCAAG
GGTACAGACGGCAGAGAGTAGTTGGCATGGCTCTGTACGCTTAAACTGCA
GCGCTCGATGGGAACGCTTAGGCAAACCACACGCTGAGTGTCTGACTGTG
CACAGCGGTGATTGCGCCACACAAGGCTGTCTCATATTTTCACGGGGTCG
TATCCATGATGAAAACCATGCTCTCAGACGATGGGTAATGCCATGATGGA
TGCCACAGGTTCAGGGACCATGGCCCAGGCTTGGTTAATTTTGTTTCGAG
TTTTTTCCTCCATTCGATCGTTTGGCTGAGCCCCCTGGTTTCCCTGCGAG
AATGAAGCGGGGATTGGATTGAACAGGGAATTCATCCAATATATACTTGG
TACTCGGTAGTCCACTAGATGTTTGTGATTTACCGTATTTACATTGGTGA
ATCAAGATCGGTGATTGGCCATAATCCCGTAATATGCGGCCAAAGTCCCA
TCCTCTCCTTATGAACTCTACCCCCCGCTCTTCGGGGCGGGACTGTCAAA
TGCCTTGTTTATTTCAAACAGCATCCGGCTCTCACAGGGATTTCCTACGG
TTTACTCGTATTGTCTTTACACCCAAAGACACCTACCGCACTGCTTGAGT
GCTGTCCATTTTCAAGCTCACAAATTGACTTCTCTTGGCGCATTTCCCCC
CCCCCCCTCTATGTCTAACCAGCAAACAAGCGAAAACTATTTGAGAAGGC
CCAACTCAAGCGACAATACGCTAAGCTTTTGAAGAAAGAAGCTCAAGCTG
CTGATGAGTCCCGCCACGGGCAGACTGGCGATGGTGAGCCATCACAACAG
GCACACACCGCGGAAGACGCAGGACCTGGTGGGGGATTTGTTTTTCAACC
GCATGCCATGGCTGGCGCTGGTGAGCGAAAAATCGGCGTTCGTGCAATTG
ACACCAAGGAGCTAGAAGGAGGACATGACGAAATCCGTCCGAAAAAGAGG
GGGGGTGGACATGAAGCCGGAGACGAACAGGCAGGGGGAAGCCGAAGTCA
GGAGAAACAGAAAAGGAAACGACAAGGTCATCGACCAGACCCGTTTCATG
AGGCCAAGGTGCGACTACCGTACACTGTCAGTGTGCAGAGTACGTATCTA
CGGTATTTTGCTGGAGCTGAAGCTCTTGTCAAAGCACCAACTTATACCCT
TAAACCAAATATCGAGCGCATATATTGACGTGATAATTTGACCTGCATTG
TGATCTCCGTACATTACTAGACTCATGTCGACCTACCGATGACGTGGATT
TTTCTTGGTGTGCTAATTTTGGTGCACCGACTTTATCAAAAGTTTTTTCC
AGAGCTCGGCACGGTTACCGTTACCGTACGATTTACCGCGCTTAACGTTA
CGGTGACGTTAACCGTTCGTTATCGTGACAATTTACTTACTGTTTACCGT
TACTATTTGTTACTGCGCCGGCGGCTTACCGTGCATATGTTACCGTGCCG
GCACCATATTTCCATGCCATGAAGGTACCTACGATTGTACGCTCAAAGTC
CTGTGTCCAGGTTGAATGTAACATTAAAATTCAAATTATCTCTGTAATTG
CAGTCTCTTTTTTTGGGCTTCCAGTTGCTCCCAAAAACAGTTCTAGGTCA
TGTGTGGTCCAGAGTTGATAGTGCTTGTGCTCCAACTCACAGCAAGTATG
CACCGTGCACAAACGAGTGGCCGCGATCGGCGCATACCACATAACACAGG
ATAATGAGCACAAGCGATGGCACAGCGCATGATGCGCCAGATGAAGTGAC
TGTAGTGTCGTGCATTACCCCTGGCCACGACACAACCGTGTCATCGTTAG
TCGACGTGCTGACGCAAAGAGTGGCAACTGCCACAGTAGTTCAACCTCCG
GCAGGAATTCGCGTGAAGCTGGCAGCATGCTGGCAAGTGTTCAAGGAGTT
CTCTCCGCCCACGTTGGGCGGCAAAAACGTAGTGTGGCAAGCTTCAGCTG
TGCGGGTACACTGCGAAGTGGATCGCTGTGAATGGAACGTCGTCCATGAC
AGGTCACGTCATGAAGGTGCACCGTGCTATCTGGAAAGCAATCACAACCA
ACACCGCCACGACACCAGTAGGGAAGGAAGAGCTAAAAGAGGCTGTATCG
CAAGGTGAACCATTTGCAATGGGCATCCTTGCCTACTGTCGATTAACTGT
AGCAGTACCTCCAACCGGGAAGAGTAAGTCGAAGCATAACTGTAGCGTTT
TTAAGTACATAACTGCAACCTTGTACTGTACTGTATTCTACAACAATGCT
GTATGTAGGATAGAGTAGGTGTCGTCGTCTATGTACTCACCAGGTGGATA
TGTGCATAATTATACAACGGTCCTCAACTTGTATGCCTTGGGTACCTGTG
CCGATCTTACGTGTAATTCCGTAATTCCACTTCAATACCTGTAGCTCTAG
CTTTCCTGCTGCCTGTCTACACTATTGTGCATTGCTGCTGTGTTGTTGGT
TGCACCTTGCTTCGTCTATTGCTGTGTTGGTTGCCACTACTGTCTGTTGA
GTGAAATTTCGTGTTTCTTGCGCCTCCTCTTGTGTGTTACTTATGTGTTT
TTGGTTGTACTGCACAGTACCACTGTGGTACAACAGCGTTGTCGTCTGTT
GTTCCGTCTGTTTTCTGTTGGGTACAATTTTGTTAGGCAAGCACAAAGTT
TGTAAACACCTTCCTGGGTTTGTAGCTTCCGGCTGGCGTCGGGATGCGCC
ATACATTACTTGCTACAGTACTTCAACCCTACCCTTCCGAAATATTCGAT
ACTGGCGCTCGTTTAATGTTCACTGTTCGTTGTTTATTGACGTATGTACA
CTTCTATTTTTGCGATATTCCGCATACTCTACCGTGCAGGACCAGCGCAT
AGCAAAGGAAAGAGCAAAGCAACCCGCGGCCCGCTGGACGGTTTCTTGGC
CTGTGGCATCTCTGTAGAGCTCAATCGCGCCAACCGCATCTTCACGATCT
GGTCAGGCGTCAATTTGAGGTCGCAGAATATGATCAACGGCATCGGCTTC
AAGCTGTTCGTTGGCAAATTCGAGCCGTCGTATGTCACAGAAAACATGCA
CAAGAATATCTTCAACAAGATACTAGAGGGTCTGTCCGACGAGGCGAAGG
ATAACACCATGCAGGGCGTTAAAGATCACAAGAAATCGTGCGACGGACTG
GGGTGGAACGGGCCGTTCTTTTCTGGACAGATCGACCTGACCGCCGCCGC
AAACCTAGAGTACATCACCTTCACGGGCAGCTACGTCCCCCCGGGTGCAG
ATGAAGTCAAGCACATGGGGTTGTGACGAGGGGCTTTCCAGGGACCCACA
CGGCGTGCGACATTTCAGGGTGGATGAATGAGGTGGGGATTTGCTTCGTT
TTCGCTGCTCTTCATTCAACTACTTAACATATACAAACTACTATATATAC
CATACCTATTTCGTCGTTTGTGAGCTGTGGTCGTTGCATGTAGGGGCAGC
TCTGATTTTGCGCTTTTGTACTGTTACATTCTCTTGGGTTTCATTTACTA
AATATCTAGTGATATTATGTTATCACATGAACCACTCGTTTTCTCATTTC
TGTGCTGTTGCGCTATTCCCCGTCATATATCAGGTTGTAGCGGAGTTCTT
TGGCGACATGATGGGAGCAACCGTCGCGCTGGCCGACGTCTTCAATGTCA
TCGACAGCATGGGTATTCCTGTCCTTCAGTGCAATGCGCATCGTCTGAAC
ACAGGAATGATGTGGGCGCTGGGGATTGCTGGCAACACCAATACATCCAA
GAACAAACCAGGAGAAGGTCACGACGAGGCTCGCGGCTTTGGTTGGCGTC
TTCAATCATTCTGCTGTCAACGACGATGAGCTGAAGGTCTAGGAGGTGTT
GGAAGAACTAGATAACACCCTCGAATTGATGAGGCACAACGACACCAGGT
GATGTGAAACATTTGTGGGAAAGTGGTGGTTCTTGTATGCAGTATGTGCT
CGATTGATTCTGCCGATACTGTACTGCAACGGCATGAAGTATTGCGACTA
CAGCAGTTCAATTTTTTTGTTGCTCTTCGCCTCAGCAATGTATCGTATTT
CCCTTACCCCTTGCGCAGGTGGACGTCTCTGAGAAATGTGATGGATAAGG
TCCTGAAGTTGAAGAACGCCATTGTTGCGTACTTTAGAGCCCACCCGAAC
AACACCCGGAAGCTGAGCACTAACGAGTGGTAAGTCACCGAGGAGTTGTG
CAGCTTGCTTGATCCTGTGGCCGAAGTGACAACTACGATTCAGGGCGGGG
CGGGCGGCTTCCTAGGCATACAACGTTCCTCATGCAAGAGCTGCTGTCAG
TGCTGGACGGACCCATGCAAGACATTCGTACAGGAGAGTATGTTAATGGT
ATCCCCAAAACGGAGGCCATAGAGGTGGACGAACTGAAAAGTGAGGCACA
AATGACGAGGGAGGTGCTTGTGGAGATGATGAGGACAAAGAAGCTGGGGT
TAGTGTCCAGCTCTATGGAGCGCGTTACCCTGGTTCTTGACTCGCGGTAC
AAACTCTGTTGGAAGCAAATTGTGCGCAGGTGGCGGGGGAAAGTTCAAGG
CGAAGTGCATGACAGCAGCAAGGGACGACATCGCAGCCCACTTTGTGACC
GTAAGGTCCCCACTCACGTCGCCAGGATCTGAGCTGGCCGCCGCCGCCGG
CGGAAGCGTACGACCTCCTGCCGCGAAGAAAGCCAAGCTGAGTAAGATGG
AACAGCGACACTAGGATTGTCTACAAGCTGTAATTAGGGATAGGCCTGCT
AGTAGAGGCGGTCGAGCAGGCCGTGCGGAGAAGCACGGCGACCTCTTCAG
AGTGGAGCTGGCATCTTACATCGCCGAGAGCGCTACGGCGGAGACAGAGG
ACTTTTCTCTTCTTCGCTTCTGGGTCCGCAGATCTTCTACGATGATAACG
TCAGGCACGAACGATGCCACTGTGCGGGCCAAGTCGCCGCATCTCGCGTT
AGTCGCCCGCCTTTACCACTCGGTTTGTGCTACAAGATTCCAGGCGGAGA
GGGACTTATCTTCTCTGTCTCTCTGCCTCGGCAATTTGCGTGCGAGCATG
TCGGCAACCAAAGTCGAGCAGATGATGTTCCTCCAGCTCAACCAGGAGAG
CATCCCGGAGGTTCAGGCTCTCAAGGCGATAATGCGCAAGCAGCAGGGGT
TGGCTCTTGAAGTGAAGGAGGCTATTGAAGAGTTTCAAACGGCTTCGGCT
GGCCAGTCTTTAGAAGTAGCACTCTGAGTACTCTTGAAAACAGGTACAAT
TGTTGAATCGCTTCATCAGGAGTACCATCAAGGGCGGGGTGAACCTCCAA
ATTATTGGGAGTCATCTTTCAGCAGTGTATGGATGGTCGAGTAGAATCCG
GTACACCTGGTTCAGCGTAGAGAAGAATATCTCTTGAGAATATGCAGGCG
CGATTGTGACGGTCTTACTAATTTAATTCTAAACCATTATCTGGTTAAGG
CGATCAAGTAATTGTTGAGAACACTGTAGTAGATTGCACCTCTGGATGAA
ATCTTCTTTTGTACCCGATGAAATTGGATTCAATACAGCAGTTGAAAACC
AAGAATGAGCTCTGGTTGTGAGTATTACAGTAGTACCACCATAGTACCAC
CGTGGGCTTCACCAGACCAGGAAGAAACGGGAAACAAACAAACCCCTCGT
TAACAGCCGCTCATGAAAAAGAGAAAACAACTTTTTCGATGGGAACGAAG
TCCTATTGATTTTTCATTGAAAACTTCGAAAATGGTGCGACCTGATGGTA
CACGCAGGGCTGATCTTTTCGATTTTCTTTCAATGAAAAAGCAATGGGAC
TTCGTTCCCAGGGAAAAGTTGGTTCCCCTTTTTCATGAGCGGCTGTCCAT
TGAAGTGTCAACAATGTTCGACGAGTTTACGCCAGGTACCGCTGCCATCA
GGCGTCAACATGGTTGTGTTTTTATCCAGGTACTCATTTTTGTGGACCGC
CACAACGACTCCGCTTCCATCTCTTTGCCTCAAAAACCGTTGTCCCAAAC
TCCCCCGTGCCGGCGACCAATTTACTGTTTCGTTGCAGTTTTGATGTCAA
CAGAAATCAGAGTTTCCCTCATTCGATGTGGCGCATTCTTTGGGATGGGA
AATGTTTCGTCGTTGCCATATCCGGTAAACAGTATGTGATTGCGATGCGC
GTCTTGTGAAAGGCATCGGTAACGAAGGAATTTCCCTTATTGCTTTTCGG
CAGGCCAAGGCTGACCAGAAAAGAAGGGAGGCAAAGGAGAGGCAAAACGA
CCGAGAGCGGCAACATCAGGAGAAAGAGGGAAGGGTCAAGAAGAGAAAGA
AGCAACACGCTTTGTTGTCCAAACGAACACGCGTGGGACAGCCGGTGATG
AAGCACACCATGCAGCACCTCTTGGAAAAGATAAAGGCTCAGAGCTAAAC
GTTAGGAATACCTATTGTAAGAGAAGCGCCATAGAATTGATGAAACGCGC
ACCGGAGGTGGTTTTTAGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig8942:2226..9396+ >mRNA_H-paniculata_contig8942.16812.1 ID=mRNA_H-paniculata_contig8942.16812.1|Name=mRNA_H-paniculata_contig8942.16812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig8942:2226..9396+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGAAAGGATCACCCCGAAGCGTTGACACTTGAACGATTTGCCTC
TGGGAAGGATGGTCAGGCTAATGCGTTCAAGAAAAAGAAGCAAGATGGCG
CGAAAGGATCACCCCGAAGCGTTGACACTTGAACGATTTGCCTCTGGGAA
GGATGGTCAGGCTAATGCGTTCAAGAAAAAGAAGCAAGCAAACAAGCGAA
AACTATTTGAGAAGGCCCAACTCAAGCGACAATACGCTAAGCTTTTGAAG
AAAGAAGCTCAAGCTGCTGATGAGTCCCGCCACGGGCAGACTGGCGATGG
TGAGCCATCACAACAGGCACACACCGCGGAAGACGCAGGACCTGGTGGGG
GATTTGTTTTTCAACCGCATGCCATGGCTGGCGCTGGTGAGCGAAAAATC
GGCGTTCGTGCAATTGACACCAAGGAGCTAGAAGGAGGACATGACGAAAT
CCGTCCGAAAAAGAGGGGGGGTGGACATGAAGCCGGAGACGAACAGGCAG
GGGGAAGCCGAAGTCAGGAGAAACAGAAAAGGAAACGACAAGGTCATCGA
CCAGACCCGTTTCATGAGGCCAAGCAAACAAGCGAAAACTATTTGAGAAG
GCCCAACTCAAGCGACAATACGCTAAGCTTTTGAAGAAAGAAGCTCAAGC
TGCTGATGAGTCCCGCCACGGGCAGACTGGCGATGGTGAGCCATCACAAC
AGGCACACACCGCGGAAGACGCAGGACCTGGTGGGGGATTTGTTTTTCAA
CCGCATGCCATGGCTGGCGCTGGTGAGCGAAAAATCGGCGTTCGTGCAAT
TGACACCAAGGAGCTAGAAGGAGGACATGACGAAATCCGTCCGAAAAAGA
GGGGGGGTGGACATGAAGCCGGAGACGAACAGGCAGGGGGAAGCCGAAGT
CAGGAGAAACAGAAAAGGAAACGACAAGGTCATCGACCAGACCCGTTTCA
TGAGGCCAAGGCCAAGGCTGACCAGAAAAGAAGGGAGGCAAAGGAGAGGC
AAAACGACCGAGAGCGGCAACATCAGGAGAAAGAGGGAAGGGTCAAGAAG
AGAAAGAAGCAACACGCTTTGTTGTCCAAACGAACACGCGTGGGACAGCC
GGTGATGAAGCACACCATGCAGCACCTCTTGGAAAAGATAAAGGCTCAGA
GCTAAGCCAAGGCTGACCAGAAAAGAAGGGAGGCAAAGGAGAGGCAAAAC
GACCGAGAGCGGCAACATCAGGAGAAAGAGGGAAGGGTCAAGAAGAGAAA
GAAGCAACACGCTTTGTTGTCCAAACGAACACGCGTGGGACAGCCGGTGA
TGAAGCACACCATGCAGCACCTCTTGGAAAAGATAAAGGCTCAGAGCTAA back to top
|