mRNA_H-paniculata_contig8939.16807.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8939.16807.1
Unique NamemRNA_H-paniculata_contig8939.16807.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: D7FNU5_ECTSI (Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU5_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.010e-52
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 QDFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLDC 285
            Q+FVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFV+YKVRYTNS TRIPEF IEPELALELLMAANFLDC
Sbjct:    6 QEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 100
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: L8GYQ9_ACACA (Elongin-C n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYQ9_ACACA)

HSP 1 Score: 137 bits (344), Expect = 2.440e-35
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    4 DFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGG--FGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLD 282
            D VKL+SA+G EF VDRK AMVSGTIK+MLSG   F E A G+++F EISTPILEKVIQ+ +YK+RYTNS T IPEFPIEPE+ALELLMAANFLD
Sbjct:    8 DTVKLISADGHEFVVDRKAAMVSGTIKSMLSGPGTFTEQAMGEINFREISTPILEKVIQYFYYKLRYTNSTTEIPEFPIEPEVALELLMAANFLD 102
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: A0A7S2XYA0_9STRA (Elongin-C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA0_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.020e-35
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:   10 VKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLDC 285
            VKLVS+EG EF+ DR+CAMVSGTI AMLSG F E+  G+V F EIS+ ILEK+IQ+ +YKVRYTNS +RIP+FPIEPE+ALELLMAANFLDC
Sbjct:   15 VKLVSSEGHEFYCDRRCAMVSGTINAMLSGQFAESR-GEVTFPEISSAILEKIIQYCYYKVRYTNSTSRIPDFPIEPEIALELLMAANFLDC 105
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: A0A6G0WB49_9STRA (Elongin-C n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB49_9STRA)

HSP 1 Score: 135 bits (340), Expect = 9.160e-35
Identity = 65/94 (69.15%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    4 DFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLDC 285
            D+VKL+SAEG EF+V RKCAMVSGTIKAML+G F E+  G+V F +IS PILEK+IQ+ ++KVRY+NS  R+P+F IEPE+ALELLMAAN+LDC
Sbjct:   11 DYVKLISAEGQEFYVARKCAMVSGTIKAMLTGHFSES-KGEVRFPDISAPILEKIIQYFYFKVRYSNSNARLPDFTIEPEIALELLMAANYLDC 103
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: A0A6U1KLA4_9STRA (Elongin-C n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1KLA4_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.040e-34
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    7 FVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLDC 285
            +VKL+SAEG EF+VDR+CA  SGTIKAMLSG F E+ SG++ F EISTPILEKVIQ+ +YK  Y NS  RIPEF IEPE+ALELLMAANFLDC
Sbjct:   27 YVKLISAEGHEFFVDRQCAQTSGTIKAMLSGSFTES-SGEIKFPEISTPILEKVIQYFYYKASYKNSQVRIPEFAIEPEVALELLMAANFLDC 118
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: K8Z122_NANGC (Elongin-C n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z122_NANGC)

HSP 1 Score: 134 bits (336), Expect = 3.040e-34
Identity = 65/93 (69.89%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    7 FVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLDC 285
            +VKL+SAEG EF VDRKCA VS TI+AML+G F E+  G+++F EIST ILEKVIQ+++YKVRYTNSP ++P+F +EPE+ALELLMAANFLDC
Sbjct:    8 YVKLISAEGHEFIVDRKCACVSKTIEAMLAGNFAES-KGEINFPEISTNILEKVIQYLYYKVRYTNSPQKVPDFKMEPEIALELLMAANFLDC 99
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: A0A1V9Z8H2_9STRA (Elongin-C n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z8H2_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.230e-34
Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    4 DFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLDC 285
            ++VKL+SAEG EF+V RKCA+VSGTIKAMLSG F E+  G+V F +IS PILEKVIQ+++YK RY+NS  RIP+F IEPE+ALELLMAAN+LDC
Sbjct:    9 EYVKLISAEGHEFFVARKCALVSGTIKAMLSGHFSES-KGEVRFPDISAPILEKVIQYMYYKKRYSNSNARIPDFGIEPEMALELLMAANYLDC 101
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: F0YER3_AURAN (Elongin-C (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YER3_AURAN)

HSP 1 Score: 131 bits (329), Expect = 2.470e-33
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:   22 SAEGAEFWVDRKCAMVSGTIKAMLSGGFGEA----ASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLDC 285
            SAEG EFWVDRKCA  SGTIKAMLSG  G      +SG++ F EISTPILEKVIQ+ +YK+RYTNS  RIPEF I+PE+ALELLMA+NFLDC
Sbjct:    1 SAEGHEFWVDRKCANTSGTIKAMLSGPRGPRQFTESSGEIKFPEISTPILEKVIQYFYYKLRYTNSQVRIPEFQIDPEMALELLMASNFLDC 92
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: A0A1W0A8X8_9STRA (Elongin-C n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8X8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 7.050e-33
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    4 DFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLDC 285
            ++VKLVSAEG EF+V RKCA+VSGTIKAML G F E+  G++ F +IS PILEKVIQ+++YK RY+NS  RIPEF IEPE++LELLMAAN+L+C
Sbjct:   13 EYVKLVSAEGHEFYVARKCALVSGTIKAMLLGQFSES-KGEIRFPDISAPILEKVIQYLYYKKRYSNSNARIPEFNIEPEMSLELLMAANYLEC 105
[Close]
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Match: A0A485K8T6_9STRA (Elongin-C n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8T6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.620e-32
Identity = 61/94 (64.89%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:    4 DFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPTRIPEFPIEPELALELLMAANFLDC 285
            ++VKL+SAEG EF++ RKCAMVSGTIKAML+G F E+  G++ F +I   +LEKVIQ+++YK RY+NS  RIP+F IEPE+ALELLMAAN+LDC
Sbjct:   13 EYVKLISAEGHEFYIARKCAMVSGTIKAMLTGHFSES-KGEIRFPDIGASVLEKVIQYMYYKKRYSNSNARIPDFAIEPEIALELLMAANYLDC 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8939.16807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNU5_ECTSI1.010e-5295.79Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN... [more]
L8GYQ9_ACACA2.440e-3574.74Elongin-C n=1 Tax=Acanthamoeba castellanii str. Ne... [more]
A0A7S2XYA0_9STRA5.020e-3573.91Elongin-C n=1 Tax=Fibrocapsa japonica TaxID=94617 ... [more]
A0A6G0WB49_9STRA9.160e-3569.15Elongin-C n=1 Tax=Aphanomyces euteiches TaxID=1008... [more]
A0A6U1KLA4_9STRA1.040e-3473.12Elongin-C n=1 Tax=Pelagomonas calceolata TaxID=356... [more]
K8Z122_NANGC3.040e-3469.89Elongin-C n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
A0A1V9Z8H2_9STRA3.230e-3470.21Elongin-C n=3 Tax=Saprolegniaceae TaxID=4764 RepID... [more]
F0YER3_AURAN2.470e-3371.74Elongin-C (Fragment) n=1 Tax=Aureococcus anophagef... [more]
A0A1W0A8X8_9STRA7.050e-3368.09Elongin-C n=1 Tax=Thraustotheca clavata TaxID=7455... [more]
A0A485K8T6_9STRA2.620e-3264.89Elongin-C n=1 Tax=Aphanomyces stellatus TaxID=1203... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8939contigH-paniculata_contig8939:6532..9479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.4e-31
Seed eggNOG ortholog2880.D7FNU5
Preferred nameTCEB1
KEGG koko:K03872
KEGG Pathwayko04066,ko04120,ko05200,ko05211,map04066,map04120,map05200,map05211
KEGG ModuleM00383,M00388
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000153,GO:0000280,GO:0000578,GO:0000819,GO:0001666,GO:0002009,GO:0002165,GO:0003002,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005705,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007135,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0008023,GO:0008150,GO:0008152,GO:0008595,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009948,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016344,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019904,GO:0022402,GO:0022414,GO:0030891,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031461,GO:0031462,GO:0031463,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033554,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035282,GO:0035295,GO:0036211,GO:0036293,GO:0036294,GO:0040020,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043618,GO:0043620,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045132,GO:0045144,GO:0045787,GO:0045836,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051276,GO:0051303,GO:0051305,GO:0051321,GO:0051445,GO:0051446,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0051759,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060429,GO:0060562,GO:0061418,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070449,GO:0070482,GO:0070887,GO:0070911,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097659,GO:0098687,GO:0098813,GO:0140013,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901987,GO:1901989,GO:1901993,GO:1901995,GO:1902099,GO:1902101,GO:1902102,GO:1902104,GO:1902494,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:1905132,GO:1905134,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2000241,GO:2000243,GO:2001141
EggNOG free text desc.positive regulation of transcription elongation from RNA polymerase II promoter
EggNOG OGsKOG3473@1,KOG3473@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Exons3
Model size1519
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8939.16807.1prot_H-paniculata_contig8939.16807.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8939 6595..8248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.7223463-UTR-H-paniculata_contig8939:6531..65941622931117.7223463-UTR-H-paniculata_contig8939:6531..6594Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8939 6532..6594 +
1691481598.1750796-UTR-H-paniculata_contig8939:6531..65941691481598.1750796-UTR-H-paniculata_contig8939:6531..6594Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8939 6532..6594 +
1622931117.7923896-UTR-H-paniculata_contig8939:8248..94791622931117.7923896-UTR-H-paniculata_contig8939:8248..9479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8939 8249..9479 +
1691481598.216228-UTR-H-paniculata_contig8939:8248..94791691481598.216228-UTR-H-paniculata_contig8939:8248..9479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8939 8249..9479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.74426-CDS-H-paniculata_contig8939:6594..66281622931117.74426-CDS-H-paniculata_contig8939:6594..6628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8939 6595..6628 +
1691481598.1856518-CDS-H-paniculata_contig8939:6594..66281691481598.1856518-CDS-H-paniculata_contig8939:6594..6628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8939 6595..6628 +
1622931117.7653394-CDS-H-paniculata_contig8939:7782..78741622931117.7653394-CDS-H-paniculata_contig8939:7782..7874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8939 7783..7874 +
1691481598.194952-CDS-H-paniculata_contig8939:7782..78741691481598.194952-CDS-H-paniculata_contig8939:7782..7874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8939 7783..7874 +
1622931117.779608-CDS-H-paniculata_contig8939:8149..82481622931117.779608-CDS-H-paniculata_contig8939:8149..8248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8939 8150..8248 +
1691481598.2040868-CDS-H-paniculata_contig8939:8149..82481691481598.2040868-CDS-H-paniculata_contig8939:8149..8248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8939 8150..8248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8939.16807.1

>prot_H-paniculata_contig8939.16807.1 ID=prot_H-paniculata_contig8939.16807.1|Name=mRNA_H-paniculata_contig8939.16807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVHYKVRYTNSPT
RIPEFPIEPELALELLMAANFLDC*
back to top

mRNA from alignment at H-paniculata_contig8939:6532..9479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8939.16807.1 ID=mRNA_H-paniculata_contig8939.16807.1|Name=mRNA_H-paniculata_contig8939.16807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2948bp|location=Sequence derived from alignment at H-paniculata_contig8939:6532..9479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATTTCGTCAAGCTGGTGAGCGCGGAGGGCGCGGAGTTCTGGGTAGA
CCGAAAGTGTGCCATGGTGTCGGGCACCATCAAAGCCATGCTTAGCGGTG
AGTATTACCGCTGTAATTGTTTTGGTGTACAGTGCTTAACCTCTGCTATT
AGTGCGCGACTCAGTTTGGATCATTTTTGCGGAGACTATCGTGTATGTAA
TGAATCAATATACAAGAACGTTTAGCCATGGATGGGGACCACAGGATTTC
CTCAGGTCGCGCACCACAAGAGGGGTTAATCCCTTTGGGATGCGGTACTT
TTCTAAACAACGTGGAAGATTTATGTCCGATTCGTTGTGTCAATCAGCAG
TTTTTCAAGCGTCCCAGAGGAGTGCCGAAAATCAGATCCGGGTGCCCAGA
AATACAGCTTCGATGGGTTGCGTCCCGAGGTTTGATATAACATAGTTTCT
ATTATATGATTTCCTCCCCTCAAACACAGATCTCAGAAGGCAGATCTCTG
TAAGCAGGTCTCTGTAAGCAAGTCTCTGAGAGCTGCATCTAAGGAAGCAA
CAAATTGAGCATAATGAGAGAGGATAGAAAGTTAGCGCTTTATGAGGGCC
CATAGCCAAACGACAAGTCTAGCAGCATAGTGAAATGCCTTGGCAGCGTA
TTGTGTTGGGGTGCAACATAAGTCAGTGTAAATATAGACGCCTTCCGAGG
CGGCAGCGTTGATTGTACTGTACTGTAGTGTTGACTACAGCGACGGAAGC
CCAACGAGGGTAGGCGCTTGAGTTAGCCGTCAGCTCTGACTTGTCAGTCC
AGTACTCTACACTTCGTATTAATATGTGAATCACCCTCGACATGACTCGA
AGTCGCTTCAATACAGTACCTCAAGGTGAACAATAGCACAGAGGAGGACA
ATAGTAGCCCCCGTAGTGTTGTCGTATAGTACCTCCCCCTTCCCGCGCCA
TTCATGCGTTAAATTACCTCTGAATTCCTGCGTCTAATAGCTTTACATGC
AGCCAAGCACACCTATAGAATGGTTAGTTTTATAGAAGAGACCGTTTTGC
ACTCTAAGAATTGGATCTACACATTGTCTTCTTAGCGCTGACACTGCACA
CTTTGAACCCAAGTAGATACGCGTTTTGCGGTTGGTGGCATGGCCAGTAT
TCTCTCGATGCATCTGACTTCCTTGCCGTTCATCTCGCACCCCCCCACCT
ACTGCCTCAATGTCCATTCCGTTTGTTGCTTGGGGTTTGTATTTTACGCA
GGCGGTTTCGGGGAGGCGGCGTCAGGACAGGTACATTTCGCGGAGATTTC
CACGCCGATATTAGAGAAGGTCATCCAGTTTGTCCACTACAAGGTGACTC
GTCATGTTCTTATGGTCTCGCGGCGTGATGCATTTTGCTCGTATTACTCT
AGAGTGGACTGGTCAACATATGGTCAGTGATAAACTTCACAAAATTGTAC
AGGTAGTACTTTTATATTATTCAACATTACTAGTTCTTCATGATGTACTG
TCGTCAAAAGCAGAAATCTGTATCGAGGTTTGAGCGCCCGCTCAGAGTTT
CTAGTTGCCGATCAATCGTCGTCCCATCTCATCCTATTCTATCCCACTTA
CCCCCGGTTTCTCTGCAGGTGCGATACACGAACAGCCCAACTCGCATTCC
AGAGTTCCCCATCGAGCCAGAATTGGCCTTGGAGTTGCTCATGGCTGCCA
ACTTCCTCGACTGCTGACGCCACCTACAGACATACACATGGACATGGGGA
GCTGTGCTACCCGGTCCTAACCTGCAGAGTGCCACCACCACGAGCGAGGC
TTGATGTCTGATGCATGCCACAAAACGAGTACGAACGAATAGAGTGCATG
GAGGGCTGGCCCTGCGATTTTTGTTTGGGACTGCCCAGTTCAACCTCCTT
GGTTTTTCCTGATTTCGCTTTTTAAAAGATGCAGCGGTTGTCGCATACCT
CCAGCAAACCTGCTCTCGCCGGAAACTTAGATGTGGCTGTGTGTCTAACT
GCTACTTGTTATGCTGTACACACACCGACGCACCATTTTCCCTGTAGGGG
ACGACCGCCCGCGAGAGGGTTTGAAAAAATTGCTCTCCCAATCCAGGGTT
GCTTTTGGTGGACAATTCGAGCATTCGGGTCCTGCGGTAGTGTTTGTCGG
CAGCTGTTATATGCCCGCGGCAGGCCAAGCCTCGAAAATTGATTTTACTA
TGGTGCGCTGTTTTGCGGTTCGCGGGGTGTGCGGGAGTGCTTTGTGCGAA
TTGATTGGCCTTGTGGGAAGGCGTGGGCATCCGGCTTTCGGTTGCTAAGG
AAGCTGCTGCGGCCACTTGGTGACTACAGGTCGTCATGGCTCTGGTGTAC
TATGCAGTGTGTAGTCTCAGGTTATACTAAGAGTTTCTGGGCCTGGAGTT
TATGCATAATTAGTTGGCTACTGAGCGGCTAAGCGACGGGAAGATACACA
CATTCGTCTTTCTTCGTTTTGCAAGCGCTCCCGTTAGAGCAAAGTCCTTG
GGTACTGTGACGTTGACCAAGTAGTGGCGTTCTTGTGCTGGAAGGGGGGA
TAAAACTGTAGCCATAGTTTTTTATTCGCATACATGGATCGTATTTGCGA
ATTTAGCACCGTTAGATCGGCGAACATCGTAGGATATATACCGTGGCTGA
GACTCGTACAACTTTATGGATAATGTTCGCCTCGGAAATTGTAAACCCCT
TCAATCGGGCAATTGACACAAACAGGTATACCTATACCATTTTCACCATT
TTCTGACATAATTCGGTACACCGTGGACTGCAATATAGTCCGCCTCATTT
TCGGCGGTCTGATTGACCAAAACAGCCTCGTTCCTGCTGCGGAAGATGAG
AGGTGAAGATATACCTGTTTGTGTTCAGTCGTTTCTAAAACGTGTACCTC
AACGTCGGCCTTTCACTGTTTGTGTTCAAAATTATATCTCTGTCCGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8939:6532..9479+

>mRNA_H-paniculata_contig8939.16807.1 ID=mRNA_H-paniculata_contig8939.16807.1|Name=mRNA_H-paniculata_contig8939.16807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig8939:6532..9479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTCGGGCACCATCAAAGCCATGCTTAGCGATGGTGTCGGGCACCA
TCAAAGCCATGCTTAGCGGCGGTTTCGGGGAGGCGGCGTCAGGACAGGTA
CATTTCGCGGAGATTTCCACGCCGATATTAGAGAAGGTCATCCAGTTTGT
CCACTACAAGGCGGTTTCGGGGAGGCGGCGTCAGGACAGGTACATTTCGC
GGAGATTTCCACGCCGATATTAGAGAAGGTCATCCAGTTTGTCCACTACA
AGGTGCGATACACGAACAGCCCAACTCGCATTCCAGAGTTCCCCATCGAG
CCAGAATTGGCCTTGGAGTTGCTCATGGCTGCCAACTTCCTCGACTGCTG
AGTGCGATACACGAACAGCCCAACTCGCATTCCAGAGTTCCCCATCGAGC
CAGAATTGGCCTTGGAGTTGCTCATGGCTGCCAACTTCCTCGACTGCTGA
back to top