mRNA_H-paniculata_contig8885.16770.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8885.16770.1
Unique NamemRNA_H-paniculata_contig8885.16770.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 3.490e-62
Identity = 107/116 (92.24%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKFAKSSKNTGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK AK+ K  G+KK  NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.090e-56
Identity = 99/118 (83.90%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 MAKTPSKKFAKSSKNTGEK--KTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK AK+ K TGEK    K KR+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 185 bits (470), Expect = 3.230e-56
Identity = 96/116 (82.76%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKFAKSSKNTGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK AK+ K  G+K  K KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.720e-55
Identity = 99/117 (84.62%), Postives = 105/117 (89.74%), Query Frame = 1 
Query:    1 MAKTPSKKFAKSSKNTGE-KKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK AK+ K   + KK K KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 182 bits (461), Expect = 4.320e-55
Identity = 95/115 (82.61%), Postives = 106/115 (92.17%), Query Frame = 1 
Query:    1 MAKTPSKKFAKSSKNTGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTPSKK AK+ K  G K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 113
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.110e-53
Identity = 99/117 (84.62%), Postives = 105/117 (89.74%), Query Frame = 1 
Query:    1 MAKTPSKKFAKSSKNTGE-KKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK AK+ K   + KK K KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: A0A7S4ACZ1_9STRA (Histone H2B n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ACZ1_9STRA)

HSP 1 Score: 176 bits (446), Expect = 9.410e-53
Identity = 95/119 (79.83%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:    1 MAKTPSKKFAKSSKNTGEKKT---KNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK A ++KN  +K     K KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKKAAPAAKNPPKKGPGGKKKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 119
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 176 bits (446), Expect = 9.720e-53
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 1 
Query:    1 MAKTPSK----KFAKSSKNTGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTPSK    K AK +    +KK   KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 119
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 174 bits (442), Expect = 3.450e-52
Identity = 92/116 (79.31%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:    1 MAKTPSKKFAKSSKNTGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+ AK+ K         KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
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BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Match: M4B6M3_HYAAE (Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B6M3_HYAAE)

HSP 1 Score: 174 bits (442), Expect = 3.560e-52
Identity = 93/116 (80.17%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 MAKTPSKKFAKSSKNTGEKKTKN-KRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTPSKK AK+   TG       KR+ESYS+YIYKVL+QVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:    1 MAKTPSKKAAKTVAKTGXXXXXXXKRVESYSTYIYKVLRQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8885.16770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI3.490e-6292.24Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A485K2U0_9STRA1.090e-5683.90Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A6U0X3U9_9STRA3.230e-5682.76Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA1.720e-5584.62Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU4.320e-5582.61Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJT3_9STRA1.110e-5384.62Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S4ACZ1_9STRA9.410e-5379.83Histone H2B n=1 Tax=Pseudo-nitzschia australis Tax... [more]
B8BX20_THAPS9.720e-5378.99Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
B7FWR8_PHATC3.450e-5279.31Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
M4B6M3_HYAAE3.560e-5280.17Histone H2B n=49 Tax=Oomycota TaxID=4762 RepID=M4B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8885contigH-paniculata_contig8885:4549..5332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.0
Seed ortholog evalue7.7e-50
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size784
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.5356233-CDS-H-paniculata_contig8885:4548..48991622931111.5356233-CDS-H-paniculata_contig8885:4548..4899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8885 4549..4899 +
1691481595.2773354-CDS-H-paniculata_contig8885:4548..48991691481595.2773354-CDS-H-paniculata_contig8885:4548..4899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8885 4549..4899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.557576-UTR-H-paniculata_contig8885:4899..53321622931111.557576-UTR-H-paniculata_contig8885:4899..5332Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8885 4900..5332 +
1691481595.2896361-UTR-H-paniculata_contig8885:4899..53321691481595.2896361-UTR-H-paniculata_contig8885:4899..5332Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8885 4900..5332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8885.16770.1prot_H-paniculata_contig8885.16770.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8885 4549..4899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8885.16770.1

>prot_H-paniculata_contig8885.16770.1 ID=prot_H-paniculata_contig8885.16770.1|Name=mRNA_H-paniculata_contig8885.16770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MAKTPSKKFAKSSKNTGEKKTKNKRLESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at H-paniculata_contig8885:4549..5332+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8885.16770.1 ID=mRNA_H-paniculata_contig8885.16770.1|Name=mRNA_H-paniculata_contig8885.16770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=784bp|location=Sequence derived from alignment at H-paniculata_contig8885:4549..5332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAGACACCGTCGAAGAAGTTCGCCAAATCCTCCAAGAACACTGG
AGAGAAGAAGACGAAGAACAAGAGGTTAGAGTCGTACTCGTCGTACATCT
ACAAGGTGCTGAAGCAGGTGCATCCCGATACGGGTATCTCTAAGCGTGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTTGCGGG
CGAGTCCGGCAAGCTGACCCGCTACAACAAGAAGGCCACCCTCTCCTCTC
GCGAGGTGCAGACGGCTGTGCGTCTTATGCTCCCCGGAGAGCTGGCCAAG
CACGCCGTGTCTGAGGGTACCAAGGCCGTCACCAAATTTACTTCGTCTTA
GAAAGCTATTGACCAGTCCCCGACACTCCCAAGTGCAGGCAGACTTGTGT
GTCCTTCTTATTTGCTTACCCCGATAATGTAATTGCACTCCCGTGCGAGC
TATTCCATAAAAAACTATGGTGTTTACTCAACATCGCCCCATCCACAAAA
AGAAAAACGCACACGTCCTCGGCATCCTGTCTACAACACGAGCCGTCTGG
CACCGGACGACACTTTGGTGCAGCTTTGGTGGTTACGTGGTTCATGCGGG
AAGGTGCGAGGTCTTGTTCTGGAGTTGTGTACACGTCCAGCACCGTCAGA
GGGTAACTAGCTGACTATAAACTAACACTTGGAGAGTTAAGTTGGTCCAG
GGGTTGTTTGGTATTGAAAGGGCTGTCAGAGTTTAAGTAGTCTTGAACTT
TAGATGGAAGGAAATTCAAATTTGAAAAATCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8885:4549..5332+

>mRNA_H-paniculata_contig8885.16770.1 ID=mRNA_H-paniculata_contig8885.16770.1|Name=mRNA_H-paniculata_contig8885.16770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig8885:4549..5332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAGACACCGTCGAAGAAGTTCGCCAAATCCTCCAAGAACACTGG
AGAGAAGAAGACGAAGAACAAGAGGTTAGAGTCGTACTCGTCGTACATCT
ACAAGGTGCTGAAGCAGGTGCATCCCGATACGGGTATCTCTAAGCGTGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTTGCGGG
CGAGTCCGGCAAGCTGACCCGCTACAACAAGAAGGCCACCCTCTCCTCTC
GCGAGGTGCAGACGGCTGTGCGTCTTATGCTCCCCGGAGAGCTGGCCAAG
CACGCCGTGTCTGAGGGTACCAAGGCCGTCACCAAATTTACTTCGTCTTA
GATGGCCAAGACACCGTCGAAGAAGTTCGCCAAATCCTCCAAGAACACTG
GAGAGAAGAAGACGAAGAACAAGAGGTTAGAGTCGTACTCGTCGTACATC
TACAAGGTGCTGAAGCAGGTGCATCCCGATACGGGTATCTCTAAGCGTGG
CATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTTGCGG
GCGAGTCCGGCAAGCTGACCCGCTACAACAAGAAGGCCACCCTCTCCTCT
CGCGAGGTGCAGACGGCTGTGCGTCTTATGCTCCCCGGAGAGCTGGCCAA
GCACGCCGTGTCTGAGGGTACCAAGGCCGTCACCAAATTTACTTCGTCTT
AG
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