mRNA_H-paniculata_contig8865.16756.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8865.16756.1
Unique NamemRNA_H-paniculata_contig8865.16756.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8865.16756.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.170e-5
Identity = 34/94 (36.17%), Postives = 46/94 (48.94%), Query Frame = 2 
Query:  320 WGQQLATSCGQLVSGADSSSRRLCLVL--------NHRFRLPNKMGP-----------QQCASVDCPERPSYGIAGSRKAEFCAQHARAGMVNV 544
            WG  LA  C  L     +  R +            +HR R+ ++ G             QC   +C +RP+YG+AGS+K EFC+QHAR GMVNV
Sbjct:    4 WGANLAAGCLYLDCTPTNVQRPIFFPARRLLGHSYHHRTRVAHRRGXXXXXXXGGSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNV 97
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BLAST of mRNA_H-paniculata_contig8865.16756.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.430e-5
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:  440 QCASVDCPERPSYGIAGSRKAEFCAQHARAGMVNV 544
            QC   +C +RP+YG+AGS+K EFC+QHAR GMVNV
Sbjct:    3 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNV 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8865.16756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE1.170e-536.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI1.430e-565.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8865contigH-paniculata_contig8865:1825..4397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size2573
Cds size2223
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8865.16756.1prot_H-paniculata_contig8865.16756.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8865 1901..4123 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.2751315-UTR-H-paniculata_contig8865:1824..19001622931109.2751315-UTR-H-paniculata_contig8865:1824..1900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8865 1825..1900 +
1691481594.347682-UTR-H-paniculata_contig8865:1824..19001691481594.347682-UTR-H-paniculata_contig8865:1824..1900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8865 1825..1900 +
1622931109.3024118-UTR-H-paniculata_contig8865:4123..43971622931109.3024118-UTR-H-paniculata_contig8865:4123..4397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8865 4124..4397 +
1691481594.3653233-UTR-H-paniculata_contig8865:4123..43971691481594.3653233-UTR-H-paniculata_contig8865:4123..4397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8865 4124..4397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.2874463-CDS-H-paniculata_contig8865:1900..41231622931109.2874463-CDS-H-paniculata_contig8865:1900..4123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8865 1901..4123 +
1691481594.356753-CDS-H-paniculata_contig8865:1900..41231691481594.356753-CDS-H-paniculata_contig8865:1900..4123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8865 1901..4123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8865.16756.1

>prot_H-paniculata_contig8865.16756.1 ID=prot_H-paniculata_contig8865.16756.1|Name=mRNA_H-paniculata_contig8865.16756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=741bp
MSKGPSGKIFKLPTAHLKFSRQHSLIPPWIYRVEAFLPESVGSVCSICLH
TFTAYIALAEERWYSLPYPGTSSVFCCSGKYWGQQLATSCGQLVSGADSS
SRRLCLVLNHRFRLPNKMGPQQCASVDCPERPSYGIAGSRKAEFCAQHAR
AGMVNVVRRTCGNEGCSTTPSYGIAGSRKAQFCAQHRKVGMVGVVSKICG
NEDCSRYSSYGIAGSKKAEFCAQHARAGMVGVKNQRCKDEDCIIRPSYGI
AGSKKAEFCAHHARAGMVGVKNQRCKHEGCTTRPSYGIAGSKKTEFCSQH
ARAGMVNVKHQTCGNEGCFRLPSYAVAGSRKAEFCSQHAKAEMVDVMRKT
CGIEDCSTRPSYGVVGSKKAEFCSPHARAGMVDVVRKTCGNEDCTTTPTY
GIAGSRKAQFCSQHARAGMVDVKNQMCNHEGCTTSASHGLLSSRKAEFCS
PHAKAGMVDVRHQRCCHEGCSTQPSYGLASRRKAECCAKHATPDMVNVKN
PMCRHEGCITRPSYAIAGSRKAEFCSQHASTGMIQTKSKKCFNKGCSNWG
QYQGKFRHQHAAEMPNVLDEGERARDGGNSNRGVVEDGMDGAAGKRARKR
GRPADAYFHANNGDSSPCGMYAGARQGGTTLPLASGQAAAGEDENVGEAE
ASVKVELAVASPAHVVGGVSTRIGWNVPSSGRSNADDRSSSDGSGKRLRG
TTSSGHLFTVADVVTGEAGVKMELAVSNSPRSVCVPVTKY*
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mRNA from alignment at H-paniculata_contig8865:1825..4397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8865.16756.1 ID=mRNA_H-paniculata_contig8865.16756.1|Name=mRNA_H-paniculata_contig8865.16756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2573bp|location=Sequence derived from alignment at H-paniculata_contig8865:1825..4397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGAAGCTCAATGAACATTAGCACCTTGATGGGACCGCTCCCTCACCCA
AAGTGCGCTGAAATCAAAATTAAGATATGTCCAAGGGACCATCAGGGAAA
ATATTTAAATTACCAACCGCTCATCTCAAATTTTCAAGGCAACATTCCTT
AATACCACCGTGGATATACCGGGTAGAAGCCTTTTTGCCTGAATCAGTGG
GCTCAGTCTGTTCGATATGCTTACACACTTTCACTGCGTATATCGCGTTA
GCAGAAGAACGTTGGTACAGTTTGCCTTACCCTGGAACATCGTCTGTCTT
CTGTTGTTCAGGCAAGTACTGGGGACAACAGCTAGCTACTTCCTGTGGCC
AATTAGTTAGCGGTGCGGATTCTAGCAGCAGGCGGCTTTGTTTGGTTCTG
AACCATCGTTTTCGTTTGCCAAATAAAATGGGTCCTCAACAGTGTGCTAG
CGTAGATTGCCCTGAGCGGCCGTCATACGGCATAGCGGGCAGCAGGAAGG
CGGAGTTCTGCGCCCAACATGCAAGGGCAGGGATGGTGAATGTCGTGAGA
AGAACGTGTGGCAATGAGGGCTGCTCCACAACGCCGTCTTACGGGATAGC
TGGTAGCAGGAAGGCACAGTTTTGTGCCCAGCATCGAAAGGTAGGGATGG
TGGGCGTCGTGAGCAAAATATGTGGCAATGAGGACTGCTCCAGATACTCG
TCGTATGGGATAGCGGGCAGCAAAAAGGCAGAGTTCTGTGCCCAACACGC
AAGGGCGGGAATGGTTGGTGTAAAAAATCAGAGGTGTAAAGATGAGGATT
GCATCATAAGGCCGTCGTACGGGATAGCGGGCAGCAAGAAGGCGGAGTTC
TGTGCCCATCACGCAAGAGCGGGCATGGTTGGCGTCAAGAATCAGAGGTG
TAAACATGAGGGTTGTACCACAAGGCCGTCGTACGGGATAGCGGGCAGCA
AGAAGACGGAGTTTTGCTCCCAACACGCAAGGGCAGGAATGGTCAATGTC
AAGCATCAGACTTGTGGCAACGAGGGCTGCTTCAGACTGCCGTCGTATGC
GGTAGCGGGCAGCAGGAAAGCAGAGTTCTGCTCCCAGCATGCAAAGGCAG
AGATGGTGGATGTCATGAGAAAAACGTGTGGCATTGAGGACTGCTCCACA
AGGCCGTCGTACGGGGTAGTGGGCAGCAAGAAGGCAGAGTTCTGCTCCCC
GCATGCGAGAGCAGGGATGGTAGATGTCGTGAGGAAAACGTGTGGCAATG
AGGACTGTACCACAACGCCGACGTACGGGATAGCGGGCAGCAGGAAGGCA
CAGTTCTGCTCCCAACACGCACGGGCGGGAATGGTCGACGTCAAGAATCA
GATGTGTAACCATGAGGGCTGTACCACAAGTGCATCGCATGGTTTACTGA
GTAGCAGGAAAGCAGAGTTCTGTTCCCCGCATGCAAAGGCAGGGATGGTA
GATGTCAGGCATCAGAGGTGTTGTCATGAGGGCTGCTCCACACAGCCGTC
GTACGGTCTAGCCAGCCGGAGGAAGGCAGAGTGCTGTGCCAAGCACGCAA
CGCCAGATATGGTGAATGTCAAGAATCCGATGTGCCGTCATGAGGGCTGC
ATAACAAGGCCGTCATACGCAATCGCGGGCAGCAGGAAGGCAGAGTTCTG
CTCCCAGCACGCGAGCACGGGGATGATCCAGACCAAAAGCAAGAAGTGCT
TTAATAAAGGATGTTCCAACTGGGGTCAATACCAGGGAAAATTCCGCCAC
CAACATGCTGCAGAGATGCCCAACGTTCTCGATGAAGGTGAGCGTGCCCG
CGATGGGGGCAACTCCAACCGTGGCGTTGTTGAGGATGGAATGGATGGTG
CTGCTGGCAAACGGGCAAGGAAACGTGGTCGTCCCGCCGATGCCTATTTC
CATGCGAACAACGGTGATAGTTCTCCCTGCGGTATGTATGCTGGTGCTAG
GCAGGGTGGGACGACTTTACCACTGGCGTCAGGACAGGCAGCCGCAGGGG
AAGATGAGAATGTTGGCGAGGCTGAGGCTAGCGTGAAGGTGGAGTTGGCA
GTCGCTTCTCCTGCCCATGTTGTCGGGGGGGTAAGCACGCGCATTGGATG
GAATGTACCTTCGAGTGGTAGGAGCAATGCAGATGATCGTTCAAGCAGCG
ATGGAAGTGGGAAGCGTCTTCGTGGGACGACGTCGTCCGGACACCTTTTT
ACAGTGGCCGATGTGGTAACTGGAGAGGCCGGTGTGAAGATGGAGTTGGC
TGTGTCGAATTCTCCGCGTTCGGTGTGTGTCCCTGTGACAAAGTATTGAG
AGGAGGACGACGACGTGCGGCGGAGGGTACTCTTTGGTGGTTGGTGGTGG
TGAGGGCGTAGGGCCGTCTGTGTTTAGACCGAGGTGGTAGAGATCGTGTT
CGTGTCGTCAGCTCTTCGCACCCGATGTATAGTCAACGATGGAGTATTAC
TTTTTCGTGGAGGGTGAGTTGAGGGGTGGCGTATTTTGTTTCTCTTGTAT
TTTTTATCTATCTGAAGGTTTATGGATGTAAATGCCGCAGAGGACGAATG
TGTTGGTTCCGTTTCCAGGAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig8865:1825..4397+

>mRNA_H-paniculata_contig8865.16756.1 ID=mRNA_H-paniculata_contig8865.16756.1|Name=mRNA_H-paniculata_contig8865.16756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4446bp|location=Sequence derived from alignment at H-paniculata_contig8865:1825..4397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAAGGGACCATCAGGGAAAATATTTAAATTACCAACCGCTCATCT
CAAATTTTCAAGGCAACATTCCTTAATACCACCGTGGATATACCGGGTAG
AAGCCTTTTTGCCTGAATCAGTGGGCTCAGTCTGTTCGATATGCTTACAC
ACTTTCACTGCGTATATCGCGTTAGCAGAAGAACGTTGGTACAGTTTGCC
TTACCCTGGAACATCGTCTGTCTTCTGTTGTTCAGGCAAGTACTGGGGAC
AACAGCTAGCTACTTCCTGTGGCCAATTAGTTAGCGGTGCGGATTCTAGC
AGCAGGCGGCTTTGTTTGGTTCTGAACCATCGTTTTCGTTTGCCAAATAA
AATGGGTCCTCAACAGTGTGCTAGCGTAGATTGCCCTGAGCGGCCGTCAT
ACGGCATAGCGGGCAGCAGGAAGGCGGAGTTCTGCGCCCAACATGCAAGG
GCAGGGATGGTGAATGTCGTGAGAAGAACGTGTGGCAATGAGGGCTGCTC
CACAACGCCGTCTTACGGGATAGCTGGTAGCAGGAAGGCACAGTTTTGTG
CCCAGCATCGAAAGGTAGGGATGGTGGGCGTCGTGAGCAAAATATGTGGC
AATGAGGACTGCTCCAGATACTCGTCGTATGGGATAGCGGGCAGCAAAAA
GGCAGAGTTCTGTGCCCAACACGCAAGGGCGGGAATGGTTGGTGTAAAAA
ATCAGAGGTGTAAAGATGAGGATTGCATCATAAGGCCGTCGTACGGGATA
GCGGGCAGCAAGAAGGCGGAGTTCTGTGCCCATCACGCAAGAGCGGGCAT
GGTTGGCGTCAAGAATCAGAGGTGTAAACATGAGGGTTGTACCACAAGGC
CGTCGTACGGGATAGCGGGCAGCAAGAAGACGGAGTTTTGCTCCCAACAC
GCAAGGGCAGGAATGGTCAATGTCAAGCATCAGACTTGTGGCAACGAGGG
CTGCTTCAGACTGCCGTCGTATGCGGTAGCGGGCAGCAGGAAAGCAGAGT
TCTGCTCCCAGCATGCAAAGGCAGAGATGGTGGATGTCATGAGAAAAACG
TGTGGCATTGAGGACTGCTCCACAAGGCCGTCGTACGGGGTAGTGGGCAG
CAAGAAGGCAGAGTTCTGCTCCCCGCATGCGAGAGCAGGGATGGTAGATG
TCGTGAGGAAAACGTGTGGCAATGAGGACTGTACCACAACGCCGACGTAC
GGGATAGCGGGCAGCAGGAAGGCACAGTTCTGCTCCCAACACGCACGGGC
GGGAATGGTCGACGTCAAGAATCAGATGTGTAACCATGAGGGCTGTACCA
CAAGTGCATCGCATGGTTTACTGAGTAGCAGGAAAGCAGAGTTCTGTTCC
CCGCATGCAAAGGCAGGGATGGTAGATGTCAGGCATCAGAGGTGTTGTCA
TGAGGGCTGCTCCACACAGCCGTCGTACGGTCTAGCCAGCCGGAGGAAGG
CAGAGTGCTGTGCCAAGCACGCAACGCCAGATATGGTGAATGTCAAGAAT
CCGATGTGCCGTCATGAGGGCTGCATAACAAGGCCGTCATACGCAATCGC
GGGCAGCAGGAAGGCAGAGTTCTGCTCCCAGCACGCGAGCACGGGGATGA
TCCAGACCAAAAGCAAGAAGTGCTTTAATAAAGGATGTTCCAACTGGGGT
CAATACCAGGGAAAATTCCGCCACCAACATGCTGCAGAGATGCCCAACGT
TCTCGATGAAGGTGAGCGTGCCCGCGATGGGGGCAACTCCAACCGTGGCG
TTGTTGAGGATGGAATGGATGGTGCTGCTGGCAAACGGGCAAGGAAACGT
GGTCGTCCCGCCGATGCCTATTTCCATGCGAACAACGGTGATAGTTCTCC
CTGCGGTATGTATGCTGGTGCTAGGCAGGGTGGGACGACTTTACCACTGG
CGTCAGGACAGGCAGCCGCAGGGGAAGATGAGAATGTTGGCGAGGCTGAG
GCTAGCGTGAAGGTGGAGTTGGCAGTCGCTTCTCCTGCCCATGTTGTCGG
GGGGGTAAGCACGCGCATTGGATGGAATGTACCTTCGAGTGGTAGGAGCA
ATGCAGATGATCGTTCAAGCAGCGATGGAAGTGGGAAGCGTCTTCGTGGG
ACGACGTCGTCCGGACACCTTTTTACAGTGGCCGATGTGGTAACTGGAGA
GGCCGGTGTGAAGATGGAGTTGGCTGTGTCGAATTCTCCGCGTTCGGTGT
GTGTCCCTGTGACAAAGTATTGAATGTCCAAGGGACCATCAGGGAAAATA
TTTAAATTACCAACCGCTCATCTCAAATTTTCAAGGCAACATTCCTTAAT
ACCACCGTGGATATACCGGGTAGAAGCCTTTTTGCCTGAATCAGTGGGCT
CAGTCTGTTCGATATGCTTACACACTTTCACTGCGTATATCGCGTTAGCA
GAAGAACGTTGGTACAGTTTGCCTTACCCTGGAACATCGTCTGTCTTCTG
TTGTTCAGGCAAGTACTGGGGACAACAGCTAGCTACTTCCTGTGGCCAAT
TAGTTAGCGGTGCGGATTCTAGCAGCAGGCGGCTTTGTTTGGTTCTGAAC
CATCGTTTTCGTTTGCCAAATAAAATGGGTCCTCAACAGTGTGCTAGCGT
AGATTGCCCTGAGCGGCCGTCATACGGCATAGCGGGCAGCAGGAAGGCGG
AGTTCTGCGCCCAACATGCAAGGGCAGGGATGGTGAATGTCGTGAGAAGA
ACGTGTGGCAATGAGGGCTGCTCCACAACGCCGTCTTACGGGATAGCTGG
TAGCAGGAAGGCACAGTTTTGTGCCCAGCATCGAAAGGTAGGGATGGTGG
GCGTCGTGAGCAAAATATGTGGCAATGAGGACTGCTCCAGATACTCGTCG
TATGGGATAGCGGGCAGCAAAAAGGCAGAGTTCTGTGCCCAACACGCAAG
GGCGGGAATGGTTGGTGTAAAAAATCAGAGGTGTAAAGATGAGGATTGCA
TCATAAGGCCGTCGTACGGGATAGCGGGCAGCAAGAAGGCGGAGTTCTGT
GCCCATCACGCAAGAGCGGGCATGGTTGGCGTCAAGAATCAGAGGTGTAA
ACATGAGGGTTGTACCACAAGGCCGTCGTACGGGATAGCGGGCAGCAAGA
AGACGGAGTTTTGCTCCCAACACGCAAGGGCAGGAATGGTCAATGTCAAG
CATCAGACTTGTGGCAACGAGGGCTGCTTCAGACTGCCGTCGTATGCGGT
AGCGGGCAGCAGGAAAGCAGAGTTCTGCTCCCAGCATGCAAAGGCAGAGA
TGGTGGATGTCATGAGAAAAACGTGTGGCATTGAGGACTGCTCCACAAGG
CCGTCGTACGGGGTAGTGGGCAGCAAGAAGGCAGAGTTCTGCTCCCCGCA
TGCGAGAGCAGGGATGGTAGATGTCGTGAGGAAAACGTGTGGCAATGAGG
ACTGTACCACAACGCCGACGTACGGGATAGCGGGCAGCAGGAAGGCACAG
TTCTGCTCCCAACACGCACGGGCGGGAATGGTCGACGTCAAGAATCAGAT
GTGTAACCATGAGGGCTGTACCACAAGTGCATCGCATGGTTTACTGAGTA
GCAGGAAAGCAGAGTTCTGTTCCCCGCATGCAAAGGCAGGGATGGTAGAT
GTCAGGCATCAGAGGTGTTGTCATGAGGGCTGCTCCACACAGCCGTCGTA
CGGTCTAGCCAGCCGGAGGAAGGCAGAGTGCTGTGCCAAGCACGCAACGC
CAGATATGGTGAATGTCAAGAATCCGATGTGCCGTCATGAGGGCTGCATA
ACAAGGCCGTCATACGCAATCGCGGGCAGCAGGAAGGCAGAGTTCTGCTC
CCAGCACGCGAGCACGGGGATGATCCAGACCAAAAGCAAGAAGTGCTTTA
ATAAAGGATGTTCCAACTGGGGTCAATACCAGGGAAAATTCCGCCACCAA
CATGCTGCAGAGATGCCCAACGTTCTCGATGAAGGTGAGCGTGCCCGCGA
TGGGGGCAACTCCAACCGTGGCGTTGTTGAGGATGGAATGGATGGTGCTG
CTGGCAAACGGGCAAGGAAACGTGGTCGTCCCGCCGATGCCTATTTCCAT
GCGAACAACGGTGATAGTTCTCCCTGCGGTATGTATGCTGGTGCTAGGCA
GGGTGGGACGACTTTACCACTGGCGTCAGGACAGGCAGCCGCAGGGGAAG
ATGAGAATGTTGGCGAGGCTGAGGCTAGCGTGAAGGTGGAGTTGGCAGTC
GCTTCTCCTGCCCATGTTGTCGGGGGGGTAAGCACGCGCATTGGATGGAA
TGTACCTTCGAGTGGTAGGAGCAATGCAGATGATCGTTCAAGCAGCGATG
GAAGTGGGAAGCGTCTTCGTGGGACGACGTCGTCCGGACACCTTTTTACA
GTGGCCGATGTGGTAACTGGAGAGGCCGGTGTGAAGATGGAGTTGGCTGT
GTCGAATTCTCCGCGTTCGGTGTGTGTCCCTGTGACAAAGTATTGA
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