mRNA_H-paniculata_contig8812.16726.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8812.16726.1
Unique NamemRNA_H-paniculata_contig8812.16726.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8812.16726.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.350e-18
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 1 
Query:   73 GPPKKVQRKSHIPRVMFTCAVSRPDPSLDSDGKIGIWRVCVFKQAHRNSARRKQ-----------------------RQQYDFDVTIDAAWYQEWYKDPFLP-LKEK 321
            GPP+ V  +SH+P++M   A +RPDP+ D DGKIGIWR+CV + A R+S +                          +++Y+FD TIDA WY++WY D  LP +KEK
Sbjct:  181 GPPR-VPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEK 286
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BLAST of mRNA_H-paniculata_contig8812.16726.1 vs. uniprot
Match: A0A024U717_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U717_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.470e-5
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   76 PPKKVQRKSHIPRVMFTCAVSRPDPSLDSDGKIGIWRVCVFKQAHRNSARRKQRQQYDFDVTIDAAWYQEWYKDPFLP-LKEK 321
            PP+ +Q K+HI +VMF  AV+RP      DGKIG W +    +A R+S  R    +    +T+    Y+E+     +P +KEK
Sbjct:  193 PPRPLQSKAHITKVMFLVAVARP--RCGWDGKIGCWALVEESKALRSSVNRPAGARVIKTLTVTREIYREYLIKSVIPAIKEK 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8812.16726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.350e-1841.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024U717_9STRA3.470e-536.14Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8812contigH-paniculata_contig8812:1105..1425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931105.1274207-CDS-H-paniculata_contig8812:1104..14251622931105.1274207-CDS-H-paniculata_contig8812:1104..1425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8812 1105..1425 +
1691481592.5171723-CDS-H-paniculata_contig8812:1104..14251691481592.5171723-CDS-H-paniculata_contig8812:1104..1425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8812 1105..1425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8812.16726.1prot_H-paniculata_contig8812.16726.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8812 1105..1425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8812.16726.1

>prot_H-paniculata_contig8812.16726.1 ID=prot_H-paniculata_contig8812.16726.1|Name=mRNA_H-paniculata_contig8812.16726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
STKRGFTEFATGIASTCSPEKKGWGPPKKVQRKSHIPRVMFTCAVSRPDP
SLDSDGKIGIWRVCVFKQAHRNSARRKQRQQYDFDVTIDAAWYQEWYKDP
FLPLKEK
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mRNA from alignment at H-paniculata_contig8812:1105..1425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8812.16726.1 ID=mRNA_H-paniculata_contig8812.16726.1|Name=mRNA_H-paniculata_contig8812.16726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig8812:1105..1425+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTACGAAGCGAGGCTTTACCGAATTCGCGACAGGGATCGCGTCCACGTG
TTCCCCAGAGAAGAAAGGGTGGGGTCCACCAAAGAAAGTACAGCGCAAGA
GTCACATTCCTAGGGTGATGTTCACATGCGCCGTTTCGCGTCCAGATCCT
TCCCTTGATTCCGACGGCAAGATTGGAATCTGGCGCGTTTGCGTCTTCAA
GCAGGCGCACAGGAATTCGGCCCGGCGTAAACAGCGGCAGCAATACGACT
TCGACGTGACCATTGACGCCGCGTGGTACCAAGAGTGGTACAAGGACCCT
TTTCTCCCATTAAAGGAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8812:1105..1425+

>mRNA_H-paniculata_contig8812.16726.1 ID=mRNA_H-paniculata_contig8812.16726.1|Name=mRNA_H-paniculata_contig8812.16726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig8812:1105..1425+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTACGAAGCGAGGCTTTACCGAATTCGCGACAGGGATCGCGTCCACGTG
TTCCCCAGAGAAGAAAGGGTGGGGTCCACCAAAGAAAGTACAGCGCAAGA
GTCACATTCCTAGGGTGATGTTCACATGCGCCGTTTCGCGTCCAGATCCT
TCCCTTGATTCCGACGGCAAGATTGGAATCTGGCGCGTTTGCGTCTTCAA
GCAGGCGCACAGGAATTCGGCCCGGCGTAAACAGCGGCAGCAATACGACT
TCGACGTGACCATTGACGCCGCGTGGTACCAAGAGTGGTACAAGGACCCT
TTTCTCCCATTAAAGGAAAAGTCTACGAAGCGAGGCTTTACCGAATTCGC
GACAGGGATCGCGTCCACGTGTTCCCCAGAGAAGAAAGGGTGGGGTCCAC
CAAAGAAAGTACAGCGCAAGAGTCACATTCCTAGGGTGATGTTCACATGC
GCCGTTTCGCGTCCAGATCCTTCCCTTGATTCCGACGGCAAGATTGGAAT
CTGGCGCGTTTGCGTCTTCAAGCAGGCGCACAGGAATTCGGCCCGGCGTA
AACAGCGGCAGCAATACGACTTCGACGTGACCATTGACGCCGCGTGGTAC
CAAGAGTGGTACAAGGACCCTTTTCTCCCATTAAAGGAAAAG
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