mRNA_H-paniculata_contig8748.16669.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8748.16669.1
Unique NamemRNA_H-paniculata_contig8748.16669.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8748.16669.1 vs. uniprot
Match: A0A6H5L717_9PHAE (SMI1_KNR4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L717_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.670e-23
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:    1 MTHVAEEGNRRKGDMTNAEMKQSVLDV-----------------------QVLEKALDANVPEELRALMSIQDGQIWFSEQQAMACKAIVAETLEMEGR 228
            MTHVAEEGN RKG MT  E+ QSVLDV                       Q LEKA D  +PEELR++M+IQDGQ+WFSE+QA+ CKA+VA   +MEGR
Sbjct:    1 MTHVAEEGNPRKGGMTYDEINQSVLDVESWFKKHARGCLDNAEGAQDADIQALEKATDTTIPEELRSIMTIQDGQLWFSEKQALTCKAMVAAAFKMEGR 99
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BLAST of mRNA_H-paniculata_contig8748.16669.1 vs. uniprot
Match: D7G8J0_ECTSI (Ubiquitin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8J0_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.660e-11
Identity = 27/43 (62.79%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  100 LDANVPEELRALMSIQDGQIWFSEQQAMACKAIVAETLEMEGR 228
            +D  +PEELR++M+IQDGQ+WFSE+QA+ CKA+VA   +MEGR
Sbjct:    1 MDTTIPEELRSIMTIQDGQLWFSEKQALTCKAMVAAAFKMEGR 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8748.16669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L717_9PHAE5.670e-2353.54SMI1_KNR4 domain-containing protein n=1 Tax=Ectoca... [more]
D7G8J0_ECTSI1.660e-1162.79Ubiquitin family protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8748contigH-paniculata_contig8748:1007..3717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue7.4e-09
Seed eggNOG ortholog2880.D7G8J0
Hectar predicted targeting categoryother localisation
EggNOG OGs2BVA8@1,2S24U@2759
Ec32 ortholog descriptionSMI1/KNR4 like domain
Ec32 orthologEc-14_003190.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size233
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8748.16669.1prot_H-paniculata_contig8748.16669.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8748 1007..3717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931097.2741334-CDS-H-paniculata_contig8748:1006..10451622931097.2741334-CDS-H-paniculata_contig8748:1006..1045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 1007..1045 -
1691481588.7820036-CDS-H-paniculata_contig8748:1006..10451691481588.7820036-CDS-H-paniculata_contig8748:1006..1045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 1007..1045 -
1622931097.3166313-CDS-H-paniculata_contig8748:1937..20091622931097.3166313-CDS-H-paniculata_contig8748:1937..2009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 1938..2009 -
1691481588.7950609-CDS-H-paniculata_contig8748:1937..20091691481588.7950609-CDS-H-paniculata_contig8748:1937..2009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 1938..2009 -
1622931097.3339562-CDS-H-paniculata_contig8748:2765..28091622931097.3339562-CDS-H-paniculata_contig8748:2765..2809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 2766..2809 -
1691481588.8064983-CDS-H-paniculata_contig8748:2765..28091691481588.8064983-CDS-H-paniculata_contig8748:2765..2809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 2766..2809 -
1622931097.3558657-CDS-H-paniculata_contig8748:3641..37171622931097.3558657-CDS-H-paniculata_contig8748:3641..3717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 3642..3717 -
1691481588.8149838-CDS-H-paniculata_contig8748:3641..37171691481588.8149838-CDS-H-paniculata_contig8748:3641..3717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8748 3642..3717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8748.16669.1

>prot_H-paniculata_contig8748.16669.1 ID=prot_H-paniculata_contig8748.16669.1|Name=mRNA_H-paniculata_contig8748.16669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MTHVAEEGNRRKGDMTNAEMKQSVLDVQVLEKALDANVPEELRALMSIQD
GQIWFSEQQAMACKAIVAETLEMEGRT
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mRNA from alignment at H-paniculata_contig8748:1007..3717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8748.16669.1 ID=mRNA_H-paniculata_contig8748.16669.1|Name=mRNA_H-paniculata_contig8748.16669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2711bp|location=Sequence derived from alignment at H-paniculata_contig8748:1007..3717- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACATGTCGCTGAGGAGGGTAACCGCCGCAAGGGGGACATGACTAA
TGCTGAGATGAAACAAAGCGTCTTAGGTGCGTCCTAATTGTTGACAGGAT
ATCCATCTGATCCATGGTCAGGTGGTGGTTGTTTGATTATGATGAATAGA
AGGTGCTGTTACTCCATGTACTACATCAACATTATAGGACAATATATCAC
TTCATGGGACTGCATCCTCGAACTCAAGGACTGGGTGCTGTTTTATTGCG
GTGTGCTCGGCATCGACTAATCTAACACAAGAGTTGGTGTCGGCGTGTCA
CAGATATTGAGTCGTGGTTCAGGCAGCACGCAGGCGGTTGTTTCGATGAC
GCACATGGGGCGTTAGAAGGAGGTGTGTGCGTTAGGTCGCGTGACAGTTC
CATGCGGCCCTTAATCAGATTCGTTAATATACGAATCATCGAGCTTAGCG
ATTTCTGTTGTTGGTGCTTTTTCACTGCGTATCAATACCTGATCACGAGA
CGGTTCGACTCTCCTCTAAAACTACCAGCAGAGCTACAGTAGAGCTCTAT
AGACGACAACGACGACGTACGTAATCCATGCAGTAACGACCCGCTCATGA
GAAACCGAAAATCCGGCTAAGGCTCAAAACGTCATTTTGGCGAGATTCAT
GAGCAGTAGTGCTTCTTTATCTAGGCATTAGTGTTGGGCCACCATTTGAG
TCTTACTTCTTAGCCCGGGTTTCTTTTGGATTTGTAAAATCTCAGCTCAC
TTCTCTTCAAACCAACCGTGTTTCTTATAAGCATGTTGGAACTGTACTGC
ATATTTTTCTCTAAGTATAGCTTCGTTCAGGCTAACGAATCCACCGATGA
AAATAAATGCGCTCTCATCTCACAAAGGCGAGTCATGTGCGTTCCGGTTT
TTTCGCAGACGTTCAAGTGCTGGAAAAGGCCTTGGACGCAAACGTTCCAG
AGGTAAGAGGGAACTATTGGATATTTCATAGGCTCCTGAAGCCTATCGAT
GTCTGGACTGACAAAGAGGATTTTACACGACTTCTTTATTTCAGGTCCCA
TTTAGGGAAGCAGATGTAAGTGACAGAGTGGAGGAGCTCCACCCCGCAAA
ACCAAGCCAGGGGCCGTGGCCAACAACTCAGACAGTCATAATTCAGAATC
CGAACCAGATAATGACCGAAATAAGACCAGATCATCTACAGTCAACGGCA
GATTCAGTACAATAAAATACTGCCAATATCCGTATAGCGCTCTTTGCGGT
CCAATAAAAACCTATGATTGTTGGGCTATTTTTCGTACCCGAATCTAAGG
ATCCAGATGGGAAAACTACACTATAATATCGGACAGGAATGGGTCACCAC
CCCCTCGTTCCTGTTTCTTTAGATACCACCACTCGGAGTTTTTGTTCTCG
CCTATACCGTCGGATTCCTGCAAAAATGCGAGGTGCACTAACGTGTCGTC
AAAAACATTCGCTCACATCCAAGCAAACCTCAGGATATTTGGGCAACAAA
CTTTCTGTAAAAAAGTTAATGATCTGTTTCCAGAATCAGCGTTACGTTGT
CCCTGATATGTATAGTATGTGCCCATCGTCGTCGATACCGCAGTCTCGAC
AAACACCTATTTACCTCTGGGAGCGTACATCATGTTTGGATATCGATCTT
ACATATTAATATATTGAAACCCACGTGCCTTCCTTCTCTTCTTTTCGCCT
AATCGCAGGAGCTACGAGCCCTGATGTCCATCCAGGATGGACAAATTTGG
TTTTCAGAACAGCAGGCCATGGCATGCAAGGTAGACCATGTACCCTACAC
ATGACACAACACAACAGTACAGCAGCATCGTATTGTTATGATGATAGGGT
AGTTCGTATGTATCAGGATATTGGTGAAATGGGGACCCAACTTTGAGATG
GGGATCCTGGGTTACATTGGAAGTAGGCTGTATCCTGAAGATCCGAAATT
TATCTTCAGGAAACAGCCTATTTCCAATATAACCCAGGGTCCCCATCTCA
AAGTGGGGTCCCCATTTCACCAATATCCTGTTATGTATGTAATATGTGGA
TAAGGTGGGCCAGTATATAGGTGAAATGATCTGGAATAATCTCCCTCTAC
GACGACAACTTCATAAAACCCTCTACATACACCTGTCTTAGGTTTGTTAG
TAGATGTCCCTTGAGTTTTACGTTACGCTCATTGTTACATACAACGCAGA
ACAACGCTGAGGATGTCGAGTGCTGTGCTACCTTCTGTTGCTGATTACTT
CCTTCAAAACAATAAGGACCCTTCTAAACGAAGGCGTTTTTTGTCCGATA
TTTCCGATTTTTCCGTTTCCGAAAACTGGAAATTGCGATAGCGAGCTCAA
ACTGGAGGGTAGGTGCGGAACAACTCTACAGCACCTTGCCCCCATAGATC
TGATGCACCTTGGTCGAAGTCGACGAGTTGTTCAGCTCGATGTCATCGCC
CTTTCCAATTTTCGGAAAACGGAAAGACCGGAAAAATCGGACATAAAACG
GCCTCTTTTATAATGGCCCTAGGACTTTCTTCGATGGTTATGTAACATAA
ATATCATCACTAAAAAAAGGAAAATTACAACAACTGCTAAAACAGCTGAA
AAACTCCCGATTTCGAGTTTGCCTGCGTTTTACTTCAGTTTGTTTGTTTA
TTTCGGTTATCATTGGACACAGGCTATTGTCGCGGAGACGTTAGAGATGG
AGGGACGAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig8748:1007..3717-

>mRNA_H-paniculata_contig8748.16669.1 ID=mRNA_H-paniculata_contig8748.16669.1|Name=mRNA_H-paniculata_contig8748.16669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig8748:1007..3717- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACATGTCGCTGAGGAGGGTAACCGCCGCAAGGGGGACATGACTAA
TGCTGAGATGAAACAAAGCGTCTTAGATGACACATGTCGCTGAGGAGGGT
AACCGCCGCAAGGGGGACATGACTAATGCTGAGATGAAACAAAGCGTCTT
AGACGTTCAAGTGCTGGAAAAGGCCTTGGACGCAAACGTTCCAGAGACGT
TCAAGTGCTGGAAAAGGCCTTGGACGCAAACGTTCCAGAGGAGCTACGAG
CCCTGATGTCCATCCAGGATGGACAAATTTGGTTTTCAGAACAGCAGGCC
ATGGCATGCAAGGAGCTACGAGCCCTGATGTCCATCCAGGATGGACAAAT
TTGGTTTTCAGAACAGCAGGCCATGGCATGCAAGGCTATTGTCGCGGAGA
CGTTAGAGATGGAGGGACGAACAGCTATTGTCGCGGAGACGTTAGAGATG
GAGGGACGAACA
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