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Homology
BLAST of mRNA_H-paniculata_contig8742.16666.1 vs. uniprot
Match: A0A6H5L244_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L244_9PHAE) HSP 1 Score: 228 bits (581), Expect = 1.190e-70 Identity = 109/199 (54.77%), Postives = 144/199 (72.36%), Query Frame = 1
Query: 4 QLVRVPKAASTAASMVARALAGCSPPGPCCEWPGDPAGSCPSKGLMCNDKVTGCSGHHMNALTLAMERDPKVFSMSNMRDVKDRIVSAFFYTAPHSPACARRDTVNYKVCFRAMVNSPRYQNVASRMLVGHYAYDGKKKICMTP-----GRG-CVANLRTVIRSACDLNFIALSEAWGTSMLLLFETVPWIAPTEEYMP 582
QL+RVPKA S+ AS++AR L GC P GPCC +PGDP GSCP +GLMC VTGC+ H M+ T AM DP VFSM+N+R V DR+VS FFYT PHSP CA +D V+Y+ CF+ M+ + ++QN+A+RM+ GH AY G ++CM G G CV +L +VIR AC+LNF+ + E W +S+LLLFET+PW+ PT ++ P
Sbjct: 59 QLIRVPKAGSSEASVIARRLGGCVPRGPCCRFPGDPPGSCPLEGLMC-PMVTGCTSHRMDPTTTAMLEDPSVFSMANIRGVVDRMVSGFFYTDPHSPPCAWKDDVDYEACFQKMITTRKFQNIAARMVSGHDAYKGGIRLCMDKDQDEGGEGVCVEDLESVIRGACNLNFVTMCETWDSSVLLLFETLPWLGPTADFFP 256
BLAST of mRNA_H-paniculata_contig8742.16666.1 vs. uniprot
Match: D7FWY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY0_ECTSI) HSP 1 Score: 221 bits (562), Expect = 1.220e-67 Identity = 107/199 (53.77%), Postives = 138/199 (69.35%), Query Frame = 1
Query: 4 QLVRVPKAASTAASMVARALAGCSPPGPCCEWPGDPAGSCPSKGLMCNDKVTGCSGHHMNALTLAMERDPKVFSMSNMRDVKDRIVSAFFYTAPHSPACARRDTVNYKVCFRAMVNSPRYQNVASRMLVGHYAYDGKKKICMTPGR------GCVANLRTVIRSACDLNFIALSEAWGTSMLLLFETVPWIAPTEEYMP 582
QLVRVPKA S+ AS++AR L GC P GPCC PG P GSCPS+GLMC V GC+ H M+ M DP VFSMSN+RDV DR+VS F YT PHSP C R D V+Y+ CF M+N+ ++QNVA+RM+ GH AY+G K+CM + C +L +VI+ AC+LNF+ + EAW +S+LLLFET+ W+ PT ++ P
Sbjct: 78 QLVRVPKAGSSEASVIARRLGGCVPRGPCCMMPGHPPGSCPSEGLMC-PAVLGCTAHMMDPKRNTMLEDPSVFSMSNVRDVVDRMVSGFLYTQPHSPLCTRTDDVDYESCFEEMMNTTKFQNVAARMVSGHDAYEGSVKLCMNKDQDVGGEAACAEDLESVIKGACNLNFVTMCEAWASSVLLLFETLRWLEPTADFFP 275
BLAST of mRNA_H-paniculata_contig8742.16666.1 vs. uniprot
Match: A0A6H5KAL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL5_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.060e-66 Identity = 106/198 (53.54%), Postives = 137/198 (69.19%), Query Frame = 1
Query: 7 LVRVPKAASTAASMVARALAGCSPPGPCCEWPGDPAGSCPSKGLMCNDKVTGCSGHHMNALTLAMERDPKVFSMSNMRDVKDRIVSAFFYTAPHSPACARRDTVNYKVCFRAMVNSPRYQNVASRMLVGHYAYDGKKKICMTPGR------GCVANLRTVIRSACDLNFIALSEAWGTSMLLLFETVPWIAPTEEYMP 582
L+ VPKA S+ AS+VAR L GC P GPCC PG P GSCPS+GLMC V GC+ H M+ M DP VFSMSN+RDV DR+VS F YT PHSP C R D V+Y+ CF M+N+ ++QNVA+RM+ GH AYD K+CM + C +L +V++ AC+LNF+ + EAWG+S+LLLFET+PW+ PT ++ P
Sbjct: 53 LMLVPKAGSSEASVVARRLGGCVPRGPCCMMPGHPPGSCPSEGLMC-PAVLGCTAHKMDPKRNTMLEDPSVFSMSNIRDVVDRMVSGFLYTQPHSPLCTRTDDVDYESCFEEMMNTTKFQNVAARMVSGHDAYDSSIKLCMNKDQDVGGEAACAEDLESVMKGACNLNFVTMCEAWGSSVLLLFETLPWLEPTADFFP 249
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | mitochondrion |
| Exons | 4 |
| Model size | 582 |
| Cds size | 582 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8742.16666.1 >prot_H-paniculata_contig8742.16666.1 ID=prot_H-paniculata_contig8742.16666.1|Name=mRNA_H-paniculata_contig8742.16666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
VQLVRVPKAASTAASMVARALAGCSPPGPCCEWPGDPAGSCPSKGLMCND KVTGCSGHHMNALTLAMERDPKVFSMSNMRDVKDRIVSAFFYTAPHSPAC ARRDTVNYKVCFRAMVNSPRYQNVASRMLVGHYAYDGKKKICMTPGRGCV ANLRTVIRSACDLNFIALSEAWGTSMLLLFETVPWIAPTEEYMP back to topmRNA from alignment at H-paniculata_contig8742:363..6187- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8742.16666.1 ID=mRNA_H-paniculata_contig8742.16666.1|Name=mRNA_H-paniculata_contig8742.16666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5825bp|location=Sequence derived from alignment at H-paniculata_contig8742:363..6187- (Halopteris paniculata Hal_grac_a_UBK monoicous) GTACAGTTGGTGCGGGTGCCAAAAGCGGCGAGCACAGCGGCGAGCATGGT
GGCGAGGGCTTTGGCGGGATGTTCACCTCCTGGCCCGTGCTGCGAATGGC
CAGGGGATCCCGCAGGAAGTTGCCCTTCGAAAGGGCTAATGTGCAACGAC
AAGGTGTGTGGTAGTTCTCCACCACGTGTGGTCTGACATGCACCTGAGAA
CCACGGAGCTGTACCGCTGCTATGTGCTTCGCTTGGTGGTCATGCTAGGG
GTGTGGACGAGGGTGTATTCATGATAACGCATGCAGTAGTCTCATGATCA
CTGACCTCTGATTTCTACAATACCGGGATGGAGAATACTGGGTGGTCGCC
GGCTAGGGTGCGTTTCACGTTGTGATATTGGCTACTATAGGGATCATCCT
TGCGTTACTACGCCAACCGGATTCTGCCATTGGGTTTTGGGCGTTCCGGG
TAACCAGAGAGGGTATACTCGGTAGGTGTGGTCGTACTCAAAGTAAAACA
ACGTCATGCCACCAACTGCATGCACGTCATTTCGTATGTGATACACTTGG
GAATGTAATCTGCGATTGTACTCATGATGGAGCATGGTCATGAATAGTTT
TGCTCTAGGGCGCCACAGCTATCAGTGCAGTAGACATCCTGTTGGATGTG
AACTCTTCGACCGAGGCCAACAGCTCATGATATGTATCGATGAACTCCAC
CATGCTCTATATACAGCGGTTTTACAACTCCATGTCACAAGGGTCAACCT
AAACAAAAGGAAGGGGTCTTGGCTGGGGTTTGAGGCCTTTTGAGTCACAA
TCGCCCACACTGGTCCCAGGTATGGGAACTAGGCTGGTACTCCCCACGGT
GTGGGAAACAGTTGCTAGACCACAGTTCCCGTATTGTGTGAAAGTTGGGG
CATTATTCCCACAATGGAAACTAATTGCCACAGATTATAAAGCGTGTGAA
AGTGTGGGCCGTATTGTTGGGGAGTCAGGGTCATAGCATCGGGACTGTGA
CTCACACTTCAGAGAGTTTGACCCACACTTGGGACACTGGGGTAGCCATG
GGCACGCTTCTAACACTGCGGAACGTGTGGCCCACAGTATGGGAAGTGTG
ACCCCCACTTCTGAGCCACATATTGCCTGTAGTTTCCGACAGTGCAAGAA
TTATGAGTTGCATTATGGGGCGTGAATCGTCGTGAGAAATGTGGGCCGTT
TCGGCTAAAAGTAAGAGGCCGTGGTCTTGGCTGGCATGGTGAAACCTTGA
AAATGACGGAATAAAGACACTGTCTCAACGTAGGATCGATCCCCAGGATT
CCCCATCGCGGTATCTATGTTTCTGTGAACGTCGGTTTTCTTTTTTTCCT
CTTTACTCGAGCGATGGATCACTATGGTCACCAATGACTGGACTATATCC
CAAACACACGAGGGGCTTTAACATCCAACTGTGACGCCGAATTGCTGTGC
TGAACGGAGCGCCGTGTCATGGGGCATGTCTTTCTGCAATGCAGTCAGAA
CATAAGGCGGTCACATGATGGCTTAGGGCAGTACCTCTCTCTCTCTCTCT
CTTTCTCTTTGTGTGTTTCTGTGGCGAACAACGTTTATTCGTACTCATCT
CCGTACGCGGTTGCACAAGCAAAGGAGAGGAGTATGAACGTATATGTACC
TGGCAGCAGGGCTACTTAGGAGGATCTCGTTTCCCATTATCTCTATGTAT
GCAGGCATTATCTTGTCAGCCCTGTAATGCTTCCGATGAACTTTCTCATT
TTGGAATGATTATCCGTTGGGGATCCTGTCGTCAGTCGCGCGCTCGGGGT
GAAGTGGTATTTTGATCGTTGACGGGGATTTCGGCCGCTAACTGGAAGTT
TGCTCGTTGATTCCAGGTGACTGGATGCTCGGGGCATCATATGAATGCGC
TGACACTGGCGATGGAGCGTGATCCGAAGGTGTTCTCCATGTCGAACATG
CGAGATGTGAAAGATCGCATAGTGTCCGCGTTCTTCTATACCGCTCCCCA
TTCTCCTGCTTGTGCTAGGAGAGACACCGTGGTGCGTGAAAAAAATAGCG
AGTGCTCACTATTTCGTCTGGATTCTTGTTTCGTTGAAACAGATGTAGTC
GATTGTGTTTGTAATTTGTGGCTCGCGTCGGGTGTATGTTTACATTTTTC
CTTGCTGATATACGGTCACAGCAACGACGATGATGTTTGATCCGAATGTG
GAGTTTGGTGAGGATGAGAACTGGCCATTTTTGGGCACAGTTCTAGTATT
TCATGATAATTTATTGCATGTATTGAATTACTTTGCCTGTTTCCTTCGAG
ATTGGATTATGAGTCATGACTTGCCGAAATCAATTCGGGGGATGCAGCTT
GCCAATGCTTCATGACTCAGTCCTCACTCCTTCCGCTTTCCATGTTTTTT
CTTCGGGGTTTGTTTTATTGGTTATCCGAGTTTAGAACTACAAGGTTTGC
TTTCGAGCCATGGTTAACTCGCCGAGATATCAGAACGTGGCGTCCAGAAT
GCTGGTGGGCCACTACGCGTACGACGGCAAAAAGAAAATTTGTATGACTC
CCGGACGAGGATGCGTCGCCAATTTAAGGACAGTCATAAGGTCCGCGTGC
GATCTCAATTTCATCGCTCTGAGGTGAGACACTGTTCCATGTGATGGCTC
GGAAGTGTTTCGGCGCGAAGGTGAGCTCGCACAGGCACAAGAACCAAACA
TTACAACGTGAACACGGGTGCCTTTGTACATTTCCTTTTTTCTAAATCTT
TTTTGGTAGGTGTATACAACTAGGATTTAAGGTCAGCTGCATAACCTCAA
CATGACTACGATACTTTGTTATATGAGCGTTATAGATCTCCTAATGGCGG
CAAGTGGGTTGACTCGTGAATGAGACTGGCGGTGGGAGCATACGCTTGTC
CCTCTCCCCCCCGATTACTATCCGATGCGAAAACAAGTATTGGCAATTCG
GACATTAACCAAGAGTTGCAGAGTACGCCTCCCCCCGTAACTAAGCTCCG
TCCTCCGGAGGACGCGTGGTCAATATATAACATGAGGACTCACCTCCCCC
CCCGGTGACAACTGAGGTGATGACCTAGTACGCCACCAAGGGTATCACGA
GGGCACGTGACCTTCATGGGACGGAATCGATGGGACGGGATCGTCGTCCC
GTCACCTCACGTTTTTTTCTTTATCGGACAGCACCTAGTCCCGTCCCGTA
GGTTTCTTGGAGGACGGGACCGAGTCCTGTCCCGTTCCATCCTGTCGCGT
CCTGTCCCGTCGCATGAGATCACGAGACCTTCCGTGGTCCCGCGAGCACT
CACGCAACCCACACATTAACCAAGTATAGATTATCGTGAAATCGTCTCAT
CTTGTCATGGTGCAGAGCTCCCTTGTCCCTAATCGTCGTAATATTCCCCC
TCCCCCATGTGCTGTGCCGTGCCGTCAAGATTTATATTCATCCTGTCCTG
TCCAGTAGTCCCATGACAACCCCTGAACCGCAATAAACGATTGACACCCC
GCGGTAATAACCTTGGTTGATGACCGAATAACTTTGCATACAGGCAATGA
TACCGGCGTCATGCTCCTTTACGCAGAGTTGTGACCACGTCCCTTGCACA
GCATTCCACAATGGGGGGAAAATCGAAATTGCTCTTTGGGCAAACAACGC
TACCGCCCCGTGTCATCGGTGTGTGGCACAAACCAACACTTGATCATGGC
ATGCAATAACCCCCCGCCTATCACACCCCCTCTGCTGCCTGCGTAGTAGA
TGCGGCACCCTAAAGTATGTCATACTGTCATCCCCCTCGCTTGTAACTCC
TCTTGTTCATTACCCCCTCCCCATGATGGTCCCGCCAAGCGCACTATAGC
GGAGGAAGCGAAGTATACCACCGCCCCTGCCCCCCTTCTACTATAACCCT
CCGGTAATGAACATTCTGCCGAAATAAAGAGGATGTCATGAACTGCAAAA
GTACGCACAGCCAGGGTGCACGGTACGGGTATAATGAGGATATGGTGGGT
AGGGCGGGCTAGAGTGTACCGCGAGCTATTCTTTGGTCCGGGGTGTACGG
TGATTTATAGTGTTGATTGCCGTTATTTTCTATTTGATAGGTGTATGCAG
ACTTCCCTTTCATACCAGGACCTTGACGCACTTCCACTGTTTTCTTGGAG
CCTATGACCCCCAGGTCAGTAGTTCCGGGGATTGTTTTTATGTTTGGTCG
TTACCTTATCGATCCTAAGAAAATCTCGCTCTACACATAATCCCGATGGA
AAGTCTTAGAGAATACTGAACCAGCCGTAGGCAATTGGTGAGCGTATTTC
AGGTCCAAAATGGGCTTGTTTTCTTGCCGATTGGCACTTTTTCCTTCACT
ATCCACGACTGGTAGCCAGGAAATTTGTCTTCGCATTGTTCTCAAGTCAT
GTTGGTTCCTACAGATGAAATACACGTGATTCTTACTCTATAGAAGACCA
CGTCATTGACCGGCACAACAGCTACCGGGCGTTTAAATGGGACGCTGACT
GTTCTCCTAAATGACGTGATGCGCCTGGAGTTTGCTATTGATGTGTTGGG
GCGAGGTGGCCACCAGAGTGCGAATCCCAGCCGGTCGCCATCGCACCCTT
GTGTATTTTTATTTTATTTTACCGAACAAACAGACCATTTAGTGTCTTTT
TCGCCGTCGTTGTCTTTCGCCGAAATTAGCTACTATACTGTGTCCTCTTG
TGGTTTTGGTTTTGTTATTCCGACATCAGCCATTGTTGTTTCACCCTATT
ACTCCTGGAAAAAAAAAGAAAAATGGCGGAGGATTTTATTTTTGCAGCAG
GCCCAACGCCGAATCACCAGTTACGCGATCACCCGTGTTGTCATGTTCGA
CTATGACTGTGGCAGGCTGCCTGCTGCTGCTCTGTCTATGCGTACCATCG
CGCATAAGAGGACAGCATACACACAGCGGCTGTCACTCGCTAAGCAACTC
CCGGGATATGCTGGTGCCTGTAATCTCTCTCCCTCTCTTCATTGTGTTGC
CGTTATTGGAGTAACACCACGTAGATAGATATGGTCGTGCAGCAGTACAG
ACAGTACATCAACTGTACTCCGTGCATTCTACCGTCTGTTTCTTCCAGGG
CCGTGTCCAACTCTGCTGACTGTATCATGCCATTTGCGCTGTCCAACTGC
CGGTCACCGTTCGATGGAACCAACGTGTGTTGCGCAGTCTATCAGCTGTA
CTACCTCCATATCTAGCCCACGGCGTTGCGGCTGGAGCATACCAGCCGTG
GACGTGCAATGGTTGAGATGAATATATTTGACTTTGACTTCTTTTGCTCC
TACGGTCACATTATTGTATGCTAGTTTATTGTTGTACGTAATTCATTTTA
TGTCACAAGGGCCTGTTCATTACGTAGTATACATCTTGCAGACCGGTATT
CATCCGCAAAACACATTTTAGTGTGTCACTAAGCGGTACCCCCCCGCCGA
TCTTGTGACACGGGATTGTGGGATTGCGTGTGTCACAAGATGTCACATCC
CAGGCCCCTAGAAATCAATCGATGAAGGTTACTCTAGAAACCAACGGCTG
CTCCTATTTTGGCTATTTATTTTTGTGAAATCAAACACATTTTTCACCTC
GGGTTGTTTTTAGATATTCGGAAATCAACCGCTGTACTCTGAACGACGGT
GAACCACTCTGCTGTTATTCGTTTTACTGCCGAGAGAAACCACAGCTCAT
ATTCCCCTCTCTTCATCTTGCTTCTCCCGAAATTGTCCACCCATTGCAGC
GAGGCGTGGGGTACCTCGATGCTGTTGCTCTTCGAGACTGTGCCCTGGAT
AGCGCCTACCGAAGAGTACATGCCT back to topCoding sequence (CDS) from alignment at H-paniculata_contig8742:363..6187- >mRNA_H-paniculata_contig8742.16666.1 ID=mRNA_H-paniculata_contig8742.16666.1|Name=mRNA_H-paniculata_contig8742.16666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig8742:363..6187- (Halopteris paniculata Hal_grac_a_UBK monoicous) GTACAGTTGGTGCGGGTGCCAAAAGCGGCGAGCACAGCGGCGAGCATGGT GGCGAGGGCTTTGGCGGGATGTTCACCTCCTGGCCCGTGCTGCGAATGGC CAGGGGATCCCGCAGGAAGTTGCCCTTCGAAAGGGCTAATGTGCAACGAC AAGGTACAGTTGGTGCGGGTGCCAAAAGCGGCGAGCACAGCGGCGAGCAT GGTGGCGAGGGCTTTGGCGGGATGTTCACCTCCTGGCCCGTGCTGCGAAT GGCCAGGGGATCCCGCAGGAAGTTGCCCTTCGAAAGGGCTAATGTGCAAC GACAAGGTGACTGGATGCTCGGGGCATCATATGAATGCGCTGACACTGGC GATGGAGCGTGATCCGAAGGTGTTCTCCATGTCGAACATGCGAGATGTGA AAGATCGCATAGTGTCCGCGTTCTTCTATACCGCTCCCCATTCTCCTGCT TGTGCTAGGAGAGACACCGTGGTGACTGGATGCTCGGGGCATCATATGAA TGCGCTGACACTGGCGATGGAGCGTGATCCGAAGGTGTTCTCCATGTCGA ACATGCGAGATGTGAAAGATCGCATAGTGTCCGCGTTCTTCTATACCGCT CCCCATTCTCCTGCTTGTGCTAGGAGAGACACCGTGAACTACAAGGTTTG CTTTCGAGCCATGGTTAACTCGCCGAGATATCAGAACGTGGCGTCCAGAA TGCTGGTGGGCCACTACGCGTACGACGGCAAAAAGAAAATTTGTATGACT CCCGGACGAGGATGCGTCGCCAATTTAAGGACAGTCATAAGGTCCGCGTG CGATCTCAATTTCATCGCTCTGAGAACTACAAGGTTTGCTTTCGAGCCAT GGTTAACTCGCCGAGATATCAGAACGTGGCGTCCAGAATGCTGGTGGGCC ACTACGCGTACGACGGCAAAAAGAAAATTTGTATGACTCCCGGACGAGGA TGCGTCGCCAATTTAAGGACAGTCATAAGGTCCGCGTGCGATCTCAATTT CATCGCTCTGAGCGAGGCGTGGGGTACCTCGATGCTGTTGCTCTTCGAGA CTGTGCCCTGGATAGCGCCTACCGAAGAGTACATGCCTCGAGGCGTGGGG TACCTCGATGCTGTTGCTCTTCGAGACTGTGCCCTGGATAGCGCCTACCG AAGAGTACATGCCT back to top
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