mRNA_H-paniculata_contig8738.16663.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8738.16663.1
Unique NamemRNA_H-paniculata_contig8738.16663.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: D7FUU5_ECTSI (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 3.400e-97
Identity = 164/197 (83.25%), Postives = 169/197 (85.79%), Query Frame = 2 
Query:   62 KDERRRSLAALESKVKALLEVQTDTLEATKRQVDKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            K+ERR+ LAALE+KVKALLEVQTDTLE+TKRQVDKK                         XXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKC+ICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDI LIQDARDLYAKIKDSLDKEQWN EDNEEYEDGEGNVLNRRTYEDLARQGLM
Sbjct:  344 KEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 540
[Close]
BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: D7G993_ECTSI (Matrin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G993_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 2.880e-95
Identity = 153/184 (83.15%), Postives = 155/184 (84.24%), Query Frame = 2 
Query:  101 KVKALLEVQTDTLEATKRQVDKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            KVKALLEVQTDTLE+TKRQVDKK                           XXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKC+ICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDI LIQDARDLYAKIKDSLDKEQWN EDNEEYEDGEGNVLNRRTYEDLARQGLM
Sbjct:   25 KVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEEEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 208
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BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: A0A836CE40_9STRA (Matrin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.230e-72
Identity = 125/201 (62.19%), Postives = 146/201 (72.64%), Query Frame = 2 
Query:   50 GRGSKDERRRSLAALESKVKALLEVQTDTLEATKRQVDKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            G+    + RRS AA E++V+A LE  +D  EAT++QV+KK                               D++GPIYNPLNLPLGWDGKPIP+WLYKLHGLGVE+KC+ICGDFSY GRR FDRHFQE+RHAHGMRCLGIPNTKHFHDITLIQDA DLYAK+K  L+ E W  +  EE+ED EGNVLN+RTYEDLARQGL+
Sbjct:  342 GKSDGGDWRRSTAAAEARVRAFLEALSDVWEATRKQVEKKQTRTVEERDAEIADEEAGTLPEVGDADEEDSDDDGPIYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGDFSYWGRRAFDRHFQEFRHAHGMRCLGIPNTKHFHDITLIQDAMDLYAKLKGKLEVEAWTPDVGEEFEDSEGNVLNKRTYEDLARQGLL 542
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BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: A0A7S2V2Q3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q3_9STRA)

HSP 1 Score: 247 bits (630), Expect = 9.260e-71
Identity = 133/202 (65.84%), Postives = 151/202 (74.75%), Query Frame = 2 
Query:   65 DERRRSLAALESKVKALLEVQTDTLEATKRQVDKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD------EEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            D  R+ +A +E ++ AL E   D +  T++QV++K        XXXXXXXXX           XXX       +EGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVE+KC+ICGD+SY GRR FDRHFQEWRHAHGMRCLGIPNTKHFHDITLI+DA  L+ KIKD L  E WNA+  EEYED EGNVLNRRTYEDLARQGL+
Sbjct:  113 DGDRKEIALMEFEISALYEQMKDVVMNTRKQVERKQTKTMEERXXXXXXXXXGTGVAAEDELAXXXXXXXXXXDEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGDYSYMGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIEDATALFDKIKDQLAGEMWNADMEEEYEDSEGNVLNRRTYEDLARQGLL 314
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BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: A0A6V1NE02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NE02_HETAK)

HSP 1 Score: 236 bits (602), Expect = 3.260e-69
Identity = 104/129 (80.62%), Postives = 114/129 (88.37%), Query Frame = 2 
Query:  266 EEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            +EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVEFKC++CG  SY GRR FDRHFQEWRHAHGMRCLGIPNTKHFHDIT I+DA+ LYAK+K  LD + W+    EEYED EGNVLNRRTYEDLARQGL+
Sbjct:   16 DEGPVYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEVCGGASYMGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITTIEDAKALYAKLKAGLDGDAWDGAVEEEYEDSEGNVLNRRTYEDLARQGLL 144
[Close]
BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: A0A812TNG2_SYMMI (SF3A3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TNG2_SYMMI)

HSP 1 Score: 239 bits (611), Expect = 5.240e-67
Identity = 117/198 (59.09%), Postives = 140/198 (70.71%), Query Frame = 2 
Query:   59 SKDERRRSLAALESKVKALLEVQTDTLEATKRQVDKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            S D  R+  A LE  +++L  +  + + AT+R  +K+                               D+EGP+YNPLNLPLGWDGKPIP+WLYKLHGLGVEFKC+ICG+ SY GRR FDRHFQEWRHAHGMRCLG+PNTKHFHDITLI+DA  LY+KI+DSL KEQ+  +  EE+ED EGNVLNRRTYEDLARQGL+
Sbjct:  202 SGDSARKKTALLEYLIQSLCSLMAEIVTATRRHAEKQQTRTLEEKLALLEEEEYGTLPDVEEADDDE-DDEGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEFKCEICGNQSYWGRRAFDRHFQEWRHAHGMRCLGVPNTKHFHDITLIEDALALYSKIRDSLKKEQFVEDVEEEFEDSEGNVLNRRTYEDLARQGLL 398
[Close]
BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: A0A7S2BL91_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL91_9STRA)

HSP 1 Score: 221 bits (564), Expect = 5.000e-64
Identity = 97/130 (74.62%), Postives = 117/130 (90.00%), Query Frame = 2 
Query:  263 DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            D++GP+YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KC+ICG+ SY GRR FDRHFQEWRHA+GMRCL IPNTKHFHDITLI+DA +L+ KI++ L+ E ++A   EE+ED +G+VLNRRT+EDLARQGL+
Sbjct:    4 DDDGPLYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNMSYWGRRAFDRHFQEWRHAYGMRCLKIPNTKHFHDITLIEDAVNLHKKIQEGLNTESFDAAAEEEFEDNDGHVLNRRTFEDLARQGLL 133
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BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: A0A8K1C7B4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7B4_PYTOL)

HSP 1 Score: 234 bits (598), Expect = 9.010e-64
Identity = 103/130 (79.23%), Postives = 115/130 (88.46%), Query Frame = 2 
Query:  263 DEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            DE+ PIYNPLNLPLGWDGKPIPYWLYKLHGLGVE+KC+ICG+ SY GRR FDRHFQ+WRHAHGMRCLGIPNTKHFHDITL++DA  LY K+K  +D E WNA   EE+ED EGNVLNR+TYEDLARQGL+
Sbjct:  396 DEDQPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRREFDRHFQQWRHAHGMRCLGIPNTKHFHDITLMRDAIALYEKLKTEIDAESWNATTEEEFEDSEGNVLNRKTYEDLARQGLL 525
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BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: A0A7S2HV93_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV93_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.090e-63
Identity = 118/198 (59.60%), Postives = 140/198 (70.71%), Query Frame = 2 
Query:   68 ERRRSLAALESKVKALLEVQTDTLEATKRQVDKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---EEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            + R  +A  E ++  L +   D L+A +R VDKK                           XXXX    +EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KC+ICG+ SY GRR FDRHFQEWRHA+GMRCL IPNTKHFHDITLI+DA +LY KIKD L +EQ++A   EE+ED EG+VLNRRT+EDLARQGL+
Sbjct:  313 DSRHDVARAEFRISFLCDQMADVLDAPRRYVDKKQTQLVEERDAEFAEEESGALAALDDEEXXXXXXXXDEGPLYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNMSYWGRRAFDRHFQEWRHAYGMRCLKIPNTKHFHDITLIEDATNLYDKIKDQLKQEQFDANQEEEFEDSEGHVLNRRTFEDLARQGLL 510
[Close]
BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Match: A0A6G0X0B1_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0B1_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.180e-63
Identity = 113/199 (56.78%), Postives = 139/199 (69.85%), Query Frame = 2 
Query:   59 SKDERRRSLAALESKVKALLEVQTDTLEATKRQVD-KKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCQICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEGNVLNRRTYEDLARQGLM 652
            +KD RR++LA LE +VK +  + T+ + AT   ++ K+                               DEE P YNPLNLPLGWDGKPIPYWLYKLHGLG+EFKC+ICG+ SY GRR+FDRHFQ+WRHA GMRCLGIPNTKHFHDITL+ DA  LY K+K+ L+ E +N ++ EE+ED EGNV NR+TYEDLARQGL+
Sbjct:  300 TKDARRKALAMLEVQVKTMASLLTEVIHATISFLELKQTRTPEELQAEILEEEEGGLSDVEVDNEPANDDEEQPFYNPLNLPLGWDGKPIPYWLYKLHGLGIEFKCEICGNHSYWGRRDFDRHFQQWRHAFGMRCLGIPNTKHFHDITLMADAIALYEKLKEQLEIETFNKDNEEEFEDSEGNVFNRKTYEDLARQGLL 498
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8738.16663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU5_ECTSI3.400e-9783.25Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
D7G993_ECTSI2.880e-9583.15Matrin-type domain-containing protein n=1 Tax=Ecto... [more]
A0A836CE40_9STRA1.230e-7262.19Matrin-type domain-containing protein n=1 Tax=Trib... [more]
A0A7S2V2Q3_9STRA9.260e-7165.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1NE02_HETAK3.260e-6980.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812TNG2_SYMMI5.240e-6759.09SF3A3 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S2BL91_9STRA5.000e-6474.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1C7B4_PYTOL9.010e-6479.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2HV93_9STRA3.090e-6359.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0X0B1_9STRA3.180e-6356.78C2H2-type domain-containing protein n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8738contigH-paniculata_contig8738:697..7817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D7FUU5
Preferred nameSF3A3
KEGG rclassRC00005,RC00443
KEGG koko:K01676,ko:K10777,ko:K12827
KEGG ReactionR00381,R01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko03450,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map03040,map03450
KEGG ModuleM00009,M00011,M00173,M00352,M00374
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000389,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0045595,GO:0045694,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0051704,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.Subtilase family
EggNOG OGsCOG5188@1,KOG2636@2759
EC4.2.1.2,6.5.1.1
COG Functional cat.AO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Exons4
Model size2904
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8738.16663.1prot_H-paniculata_contig8738.16663.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8738 2946..3149 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.2937837-UTR-H-paniculata_contig8738:696..29451622931096.2937837-UTR-H-paniculata_contig8738:696..2945Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 697..2945 -
1691481588.2554662-UTR-H-paniculata_contig8738:696..29451691481588.2554662-UTR-H-paniculata_contig8738:696..2945Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 697..2945 -
1622931096.3295152-UTR-H-paniculata_contig8738:3149..31921622931096.3295152-UTR-H-paniculata_contig8738:3149..3192Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 3150..3192 -
1691481588.2835922-UTR-H-paniculata_contig8738:3149..31921691481588.2835922-UTR-H-paniculata_contig8738:3149..3192Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 3150..3192 -
1622931096.3447382-UTR-H-paniculata_contig8738:4410..45741622931096.3447382-UTR-H-paniculata_contig8738:4410..4574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 4411..4574 -
1691481588.2916596-UTR-H-paniculata_contig8738:4410..45741691481588.2916596-UTR-H-paniculata_contig8738:4410..4574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 4411..4574 -
1622931096.3663626-UTR-H-paniculata_contig8738:6208..63491622931096.3663626-UTR-H-paniculata_contig8738:6208..6349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 6209..6349 -
1691481588.300138-UTR-H-paniculata_contig8738:6208..63491691481588.300138-UTR-H-paniculata_contig8738:6208..6349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 6209..6349 -
1622931096.384369-UTR-H-paniculata_contig8738:7714..78171622931096.384369-UTR-H-paniculata_contig8738:7714..7817Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 7715..7817 -
1691481588.3095863-UTR-H-paniculata_contig8738:7714..78171691481588.3095863-UTR-H-paniculata_contig8738:7714..7817Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8738 7715..7817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931096.310616-CDS-H-paniculata_contig8738:2945..31491622931096.310616-CDS-H-paniculata_contig8738:2945..3149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8738 2946..3149 -
1691481588.2743769-CDS-H-paniculata_contig8738:2945..31491691481588.2743769-CDS-H-paniculata_contig8738:2945..3149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8738 2946..3149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8738.16663.1

>prot_H-paniculata_contig8738.16663.1 ID=prot_H-paniculata_contig8738.16663.1|Name=mRNA_H-paniculata_contig8738.16663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MRCLGIPNTKHFHDITLIQDARDLYAKIKDSLDKEQWNAEDNEEYEDGEG
NVLNRRTYEDLARQGLM*
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mRNA from alignment at H-paniculata_contig8738:697..7817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8738.16663.1 ID=mRNA_H-paniculata_contig8738.16663.1|Name=mRNA_H-paniculata_contig8738.16663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7121bp|location=Sequence derived from alignment at H-paniculata_contig8738:697..7817- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGACGGCAAACGGGGTAGCACCAGGGGTGGAAGCGGGTAGGGTGGGAG
GGAGAGGGAGCAAGGACGAACGGCGCAGGAGTCTGGCTGCGCTGGAAAGC
AAGGTACTACAGCCAGCACTGGTTTGTCAGGAAAGGGGAGACGGAGCCGA
TCTATTCAGCCTATTCATTGTTGCTGTTGCTGTTTTGTGCTTTTTGGTTG
AGCTGGAGGAGAGGAGCTTTTTACTTTCTTTTTTTTTTTAACATGTTACA
CAAAAACTAAGATAAAATGTGTGACGTTTGTAACGTAAAGACCCCTAAAA
AAATACTAGTTTATTAAATAAATAAATAATAATAATGTCGAGTAAACAGT
GCCTCTCCCTCCATTTCAAACTCAAAAGCACAGAACGTCACGTTACACAA
GAACCAAGATAAACTGTGTGACGTTTTGTAACGTAAAGAGCCCTGCAATT
CTCAAGTGTTTGTGTACGTACGTACGTACGTGTGTGCGTGCGTTTTTTTT
TCTTTTGGGAGTTCGACGGTTTCAGCTTGACACCTGTGGGGTTACTTGAC
TTTGTAAGAAGCTTTGGAAAAATGTTCCGATTTTTTTCATGATCATCAGC
AGCTTTTAGCACCCTCGCCAGGATAAGTAAATTGAAAGCAATAAAGGGCA
TGGCTACATATCCCCCCCCCCCGCACGCTGTCACCGTTTTTTCCCTCTGT
ATCCATGCTTGACACGAACCCGTGAAGTACGCATAACAGCTCGCTTGTGC
ATATGCTCATCTTGAAGTTTACATGGTGTACACAATGAAACTTGGATAGT
GTAGCGTTCTTGAAGATTGTTCCAGTAGATTGGTGGATATCGCTTGTGCA
CGAGTACCACGTTTTTTAAGGGTGGGGCGGGGGGGGGAGAGCAGCTGCAG
TCAGTTGGAACTGTAATTCTGAACCTCGTATTATAACGCTCTTGTACCCG
TGTTGAGGTATGCAGCTGACTTCAACCTGCAGCTGTGTAGAGTTATCAGT
AAAATGGAATCAAGAGGAGAGTTTCGTTGGTTCTTGTGTTTATTTCACGG
TTCCGGGGCCTGGGCTGCAGTTTATTGGCGAATCAACCGATGACTTGACT
AATCAACACTTGGTTGGAGTCATCCTACGGTAGGGGGGTCAAATGTTTAA
CGAAAGCCGTTTCGCAGAAGCGGTGCAAAAATAACGCGAATCAAAATCAT
GTTAATTGTATGTGTTTGGGCATCCTTAAAGGTGCACAGTCCACGAGTTG
AAGTGGTATTTCTGTTTAAGGGGGGGCAGCAAATTCAAATTTCAAAGAAA
ACATGCTCAATCCTCTTCTGAAAGCGGTTCCTTCGTTAAGTTCGTTAAAT
AAAGTGGCCCAAATAATCCCCCCCTACCGTAGGATGACTCATTGGTTGAT
GAAGACCTATCGGTCAGTGAACGAATCGATGAATTACTGAATCGATGAAT
CGACTGTATTATCACCAGGTGAAGGCTCTCCTAGAGGTGCAGACCGACAC
GCTGGAAGCGACGAAAAGACAGGTGGACAAGAAGCAGACCAGAACCGTTG
AAGAGCGGGACCAGGAGATAGAGGAGGAGGAACAAGGCGCGCTCCCTGAG
TTCAATGAGGTGTGTACATGTGTATCACTACTGCACCTGGCGGCTTGGCT
TGGGAGGGGCAGATAGGGACAGGACTCACTTGCCGGTAGAATATGCTGTA
CTATAATGTGGAGCTCATGGGTATATCCCTGCAGTAGAGTATATTGTGGC
TCACTGTGTGACTCGCAGTACTCAGTATGTTTGTCGCAGTACACAATATT
GTTCCTGGATCTACTTGGTATTGTTTCTTACAGTACCACAGTATTTTTTT
CTGGATATTTTTTTGTATTTTCTCACAGTCGCACAGTTAGACCCGGCGAC
ATGACTGGGCGATTATTCGGAGATCGGTTCGGAATGAATAAAAACTAACT
CAGCGGTGTAACACCAATTGACCAATCAAATAGCGCAACGACTTTTTAAA
ATTCGAACGCTGGCGTCAAGATTTTGGGGGACCCGTAGACAGAAATGGCC
AGTGGTCATCACACCTGCAATGAACTTGATTATTGACTGTACTGACTGTG
CATTTTTCATCATGTGATGAAGGAACAACAAGCATGCAAGAAAATATTAT
TCGACACGCTCGAGTGTGTTTGTTGGTGCTCGCACTCTGATCGGACTTTG
GGTCTTTAATCCCGGACCTGCCTTCGCGTCTTCAATCCGGGCATGGAGCT
CGCATGGGTTGGATTCGTGGCCTGGATTGGTGAAAGTTCGAAAATGACCG
GTACAACATGCGTAGACAGACCACAAGCGGACCATCGTGGCGGTATATAT
TTTTTCTTGTGATTTTTTTGCTGAACTGCAACAAAAGCATTTTCCCGGAA
ACATTCTGCTGCTCTGTCGTAATCATGGTGGCGTGGGCTACTGTGCTCTG
ATGAAAAGCATGGAGTAATGGGTTCCATGAAGATGCCGTATTCTGCTGCC
GTGCTGTGAGAATATCGTACAGATAGTCAGAGCACGATGGCTGAGGGCAA
TACGCCACCACCTCTCTTTCTCTATCGGCTGTCTGTGTTGTACACGGTCA
GACTGCTTACTGCAAATTTGTGAAAAGCGGTATACTACCTGGCAGCGCGA
CTGCATTTCCTAGTATATGTATATAGGTGTTGTGCATAAACAATTCTTCA
TTTCCGTATGTTTGGTATGGTTCGTCTGTAGTCCGTTTGGCGCTGTTGCA
CCAAAGGATTGAAGGGAAAGTAGCCCCAATATCGATGTTTTCGAACATGA
ACGTTCACTAAACTGCTTTCACGGTGAGACGTTACTTGACAGAAAAAAAA
GCATAGAAGCAAATGAAGGATTTTACCAAGGAATTCAGTCCCCCCCCCCC
GCTGTAGCACCTCTGTAGACCCTGGCGGCCGACTTGGCGGGTATGTGACC
AATGCGGCCTGCCTAAGAAAGATGCCGAACGGGTAAAGACCTATTATAAG
CCGTTCATAATGCATGGTGGAAAATAGCGAAACGGCTGAAAAGATAGGGG
GAGGAGGAGAGGAGAGTATAGGCTCCATGAAAAAATGTCCCTAGCACCCT
CCCGGAAAGAGCTGTCAATTGTACGGTGAAGCTCTAGCCCTGCGTATTGT
TGTGTGTACCCTTCGCGAGGGTGTTGATTAGAAAGGAAATATTTTCCATG
TTGACTGTGATGACCTTTCATGATGGTGCATGTATCACTGCAGGAGGAGG
AAGAGGAAAGCGACGAAGAGGGCCCTATTTACAATCCCCTCAACCTGCCC
CTCGGCTGGGACGGCAAGCCCATCCCGTACTGGCTGTACAAGCTCCACGG
TTTGGGGGTAGAGTTCAAGTGCCAGATTTGCGGCGACTTCAGCTACAAGG
GTCGGAGGTATGTATAAATATGTCCTTCCGTGCGTGGGGGGGAGGGAGGA
AAGTATGGTAGGGGGGGGGGGGGGGGACATGGCGATGGTGTTAACGGACG
CCAATTGGCGAGGGGAAGCAGGGCAGAATCCAAGGCATAGAAACACAGTT
TAAAATAGAGTTTCATAACAGTATACGCGGAAGATGTACAACTAGAGAAC
GTGCCCCTAACCATTTTACGAATTAGAGGGTGCGCCCAGTAAGTCCATGA
CTGCTGGGTGACTGAATCGTTATCTAGAAATAGACCACGTTTAGCGGCGA
GGGGGGGGGAGGGGGATATCCATCTTCTTGCCGGAAGTCGGACCGTTTGG
AAAATGGCGATTTAACGATTGCATGCTAGAATAGGACCTTGAAGACGTTA
ACCACAACGATTGCCCATCTTTTTCACGTGAATTTCAGAAATGGTTTGAA
TGATGAAACGGCAGCGCTCACTCCTTCACCAAACTGTTGTGCGGTGCATC
ATTGAACTCTTGTTCATTGAATCCCAATATATCTATCTATATCTATCTCT
CTATATAGTTAATTAATGGAAGTCTGTGATACGAGTACGAGCAAGCCTTC
GGGCGCCGATCCACACAAAGCCCCTATCTAATCGAATCTCATGTGGGAAA
AAGGGGAAGAACAAGGTATATGACATGATTGGATTACGACGATACGGACC
CGCCGCTGCTCAGATAGCCAGTACCGTACAGATAGTGCTACAACACAAAC
AAGGAACAGGCATGGTTCTGCGTACAAAGATCAGATGCACTAGGGTTCTG
TATTGGTCGTCCCAACCACTGACGTTTATATTGGTAGATTAGCGAAACAC
AGATGAATCGCCATCACCTTCGTGCTGTGGTTCAAAGGCGGCCTCAAAGT
AATGCCGTTCAAGTTTTTCAGGTCCCGTCTCTTTCTTGTCTCCGAGTCTT
TCGCATCGCGTTAAATCGACTCTTTGCCCAATATCACACCGTAACTGTCA
GCGTCATAATCTACTTTTCCTGGACCACCGCACACTTGCTGTTTGTTTTT
ATTATTTTTTATCAAACGCCCCCTTTACATACAACCTGCCCCTTACTTCG
TTCCTCTACGTGCCAACTCGTCTATTTGTTTCGTTTCGTCCACTTTGTGC
AGTTTCGTAACTACTTCTTGTCGTTTCGTCACCACTTCGTGCCGTTTCGT
GACCGATTTGTGCCGGTTCGTGCAGGAACTTCGACCGCCACTTTCAAGAG
TGGCGCCACGCGCACGGGATGCGCTGCCTGGGTATCCCCAACACGAAGCA
CTTCCACGACATCACGCTAATTCAGGACGCACGAGACTTGTACGCAAAAA
TAAAGGACTCTTTGGACAAGGAGCAATGGAACGCCGAAGATAACGAGGAG
TACGAGGATGGCGAGGGAAATGTGCTCAACCGTCGCACCTATGAAGATCT
GGCACGGCAGGGCCTTATGTAGGGAGCGAGTGGGGATTGATTGCAACGCA
AGAGTGCCGAACTATCGGATCGTTCAAGGATCGTGGAGTGTACTTGGAGG
GATCACGGAGGCCTTGTGAGAGACCGTCGGTGCACTGTTGAGCGCGGGGC
GAATGTACATTTTTTCCCACCGCTCCCCGAGGATATTGTTGTACTACTTT
CTCTTATCCAACAATTTAGTACTATCGGGTTAACGTATCGCCAGATCGCG
AATTTTTGTTTTCTATCACCTATCTCTTGTTGGTAATAGCGTGCCGTTCT
GAATAACAAAAAACTGATTTTTTGTCGGTCGTCGCAAATTGTCGGCTGTT
GTTGTCTGTTGTACTCCTCTGCTATAGTGCGGACCAGCGATCCAGAGATT
ATCGATATTGAGAGAAGTTGTTTTTCATGTTGGGGGGACTTGAGTAGATA
ATTTTGTTTTGTCGCATTTCGATGAATGGTCATACTCCAATTTTGGCTGA
CAAGTCATACTCCAGCATTGGTCGACGAGAGGTAAACTAATTGCCCCATC
CTAGCCACAGATGTGAGTAGAAGCGTGTTTGTTTACAGAGTACGTCACTT
GAGGTGATGGAACAACTTCTGTTCCAACCCGATTTCGTCGAAAACTACTC
AATTCCTGCTGTAGCGAAGCCGAAAGGTGGGGTTTGGAAATATCTTGTTG
AGATATTTGTCATTAAAAACATGCGTGAGGGGGGGGGCTCTTTGACATTT
CAGACCTTCACCTCTCGAGAAGGTCCACTTCGGTATATATCATCACCCAC
CCGCGTTGCTTCACAATATTGTCTGTTGATTCAAAACTCTTGTTTGCAGC
GGGGATGACTGGACCTCATTTTAAATTTATATCCCCGCGAGTGTGTCGTC
GTTGTGGCCTCGATTTGGGTGTTTGTTTGCCCCTTACGTACATGGAGTAT
GCGATAATGCAATGGGATGTTGATGTGTGATTGCTGTGCGTTCGTGTGAA
CGCTATGATAAACCCTTCTACGGTGCTCGTTTAGAACGATATATATCCTG
TCAAGGGGCAGCATGGACGATGGAGAGAACGCAACCAAGTGCCAAACCGA
TCTCATCAGTGAAGAAGCGAAAAGTATGCCGGCATTGAGGTGATACTCAA
GGCGGCATTTGGCTATATAACGGAGATACAAGCACTGCAAATAACACTTT
GGTACATGTTCGATTTTGTCTTGATCCAGTAGAAAAGGTGAAACCGTCGC
GCCGCGACCGTTTCACCCTAAAATATTCAGCCAGACTCATGGAAGGTGAC
GAAAAATCCCTATACAATTTCAAGTATACTACTAAAACACGAGGATTCAC
GTGACTGAAATGACTTGAATATCCCTGTGCCTTTGCCGTTGCTTGATGTT
CAGGGTACTACTGTAACATGAAATCGTTGACTGTCGTAATAATGGCGTAC
GTGATCTTTGTCAGGAGAAGCCAAGAAGACGGGTATGAGAATACTGTGCA
GTACGAAAGTACAAGAACCTAACAGAAGCAGTGAAAGATGCTCCTCAAGG
TTTGCTAACGCCTCCGTTGAATCTCGCTGTACATCCACGTTCCGCTGGTC
GTTGTAGTTGATGTTCCTTTTTTTCTGTGGCCTGCTTGGTGGTGCTGGGA
TGTGGCGTGTCGAAAGTGTCACAAACAAACTCAACCAGCCAGCATTTTAT
TCGTCGCGTTCTTGCGATTTACGGACTTGGTCAAGAACATCTTGCTTTTA
GAAACGCAGGAACCGCAGCACATATTTTCAGTGGGAGACGTCTTTCTGGA
GTCGGGTTCACAACTCTCTTCATAGACCATGTGTCATGGCTCGGGGATAA
GCTACGATGAGAAGGTTCACTGCACCGATGCAGAATTTCCGCTGGAGATA
TGATGGGAAAAAAGGCCTGATCATGTGAGGACACCTCCCTGTCGCGGAGG
GTTTGGCGCTTTAACCTACAAATAGGCCTGTGTGTCGTCAGTAGCGCGTG
CACGGAGAGTGAGACAACGAAGCCAACATTCGCGAACAAGAGAAAAGCCC
CCCCCCGGGGGGGGAGGGGGGGTTAAGAAGGGCTACCTCACGAAAACAGT
AGTTTCGCTAGAGATACAATGTGCTTGGTGGTAGCGTTGTGCAGAGAATG
GGCGACGAAAAGTCACCCTACAAATACGTACCATATGGGACATAGTTAGG
AGACGCTCTGTCTCGCTAAATACGCCGCCTTGGCACATACAAAAAATACC
AAATTTTGGGTCCAAGTCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8738:697..7817-

>mRNA_H-paniculata_contig8738.16663.1 ID=mRNA_H-paniculata_contig8738.16663.1|Name=mRNA_H-paniculata_contig8738.16663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig8738:697..7817- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTGCCTGGGTATCCCCAACACGAAGCACTTCCACGACATCACGCT
AATTCAGGACGCACGAGACTTGTACGCAAAAATAAAGGACTCTTTGGACA
AGGAGCAATGGAACGCCGAAGATAACGAGGAGTACGAGGATGGCGAGGGA
AATGTGCTCAACCGTCGCACCTATGAAGATCTGGCACGGCAGGGCCTTAT
GTAGATGCGCTGCCTGGGTATCCCCAACACGAAGCACTTCCACGACATCA
CGCTAATTCAGGACGCACGAGACTTGTACGCAAAAATAAAGGACTCTTTG
GACAAGGAGCAATGGAACGCCGAAGATAACGAGGAGTACGAGGATGGCGA
GGGAAATGTGCTCAACCGTCGCACCTATGAAGATCTGGCACGGCAGGGCC
TTATGTAG
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