mRNA_H-paniculata_contig8646.16604.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8646.16604.1
Unique NamemRNA_H-paniculata_contig8646.16604.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8646.16604.1 vs. uniprot
Match: D7FHV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 3.100e-29
Identity = 61/92 (66.30%), Postives = 68/92 (73.91%), Query Frame = 1 
Query: 1417 HNNFSDVALFAPGAMRQLKNAGSIDGVTFQDQVARLLLCSLEVFHRRRTESGDADGTSPPSDLASVVLGSDLPAVFPEARVKRLCAGRVLPS 1692
            H NFSD  LFAPG +R+L+ AG ID V F DQV RL LC+LE+F RRRT SGDA  T  P DL SVVLG DL   FPEARVKR+CAG V+PS
Sbjct:    6 HTNFSDSPLFAPGPLRKLQGAGDIDCVIFIDQVTRLALCALEIFLRRRTSSGDAAKTPAPGDLGSVVLGEDLAVAFPEARVKRVCAGGVMPS 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8646.16604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHV7_ECTSI3.100e-2966.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8646contigH-paniculata_contig8646:2..3088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_000590.1
Exons2
Model size2596
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8646.16604.1prot_H-paniculata_contig8646.16604.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8646 1460..2199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.7207165-UTR-H-paniculata_contig8646:1..14591622931087.7207165-UTR-H-paniculata_contig8646:1..1459Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8646 2..1459 +
1691481584.1916244-UTR-H-paniculata_contig8646:1..14591691481584.1916244-UTR-H-paniculata_contig8646:1..1459Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8646 2..1459 +
1622931087.7669444-UTR-H-paniculata_contig8646:2199..30881622931087.7669444-UTR-H-paniculata_contig8646:2199..3088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8646 2200..3088 +
1691481584.2359636-UTR-H-paniculata_contig8646:2199..30881691481584.2359636-UTR-H-paniculata_contig8646:2199..3088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8646 2200..3088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.7379203-CDS-H-paniculata_contig8646:1459..15131622931087.7379203-CDS-H-paniculata_contig8646:1459..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 1460..1513 +
1691481584.202751-CDS-H-paniculata_contig8646:1459..15131691481584.202751-CDS-H-paniculata_contig8646:1459..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 1460..1513 +
1622931087.7533693-CDS-H-paniculata_contig8646:2004..21991622931087.7533693-CDS-H-paniculata_contig8646:2004..2199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 2005..2199 +
1691481584.2240012-CDS-H-paniculata_contig8646:2004..21991691481584.2240012-CDS-H-paniculata_contig8646:2004..2199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8646 2005..2199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8646.16604.1

>prot_H-paniculata_contig8646.16604.1 ID=prot_H-paniculata_contig8646.16604.1|Name=mRNA_H-paniculata_contig8646.16604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MRQLKNAGSIDGVTFQDQVARLLLCSLEVFHRRRTESGDADGTSPPSDLA
SVVLGSDLPAVFPEARVKRLCAGRVLPSRDYS*
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mRNA from alignment at H-paniculata_contig8646:2..3088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8646.16604.1 ID=mRNA_H-paniculata_contig8646.16604.1|Name=mRNA_H-paniculata_contig8646.16604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3087bp|location=Sequence derived from alignment at H-paniculata_contig8646:2..3088+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCACTTATAATTCTCCGTCCCACAAAAACCAGATTCTTCCAACCTTCCA
GAATCTTCCTCTTTCACTGAAGGACTACTTGATTTAGTTATGTGCCTGAC
GTATATGATACACTTAAGACGGACACTCATGATGAAAAATTGACCGCAAA
ACCCGCGAAAATTCTGAATCCAGATATAACGTTGAAATATTGTGTCAGCT
CAATTTTTTCCTGTTTCGTAAACTGTTTGGTTCTATCCGCACACCTTTCG
CGGAAGGGTGTGCCTCACAGTACAATCTTTCCATTGTATAGTGCGAGATG
CGACTTATTATTCTACCAAAAGAGGAGCTGCTTCGACCGTGCGCCTCAAT
AGAGGATCGTTTTAGAATGTACACAGATTTGAGCAAGAATCGCTCCTGCA
CGCGCAAAATAAACCCGCTTGAGTTCGAACTTGGCTGAGAGATTAGGTGA
GCCCTGGCAGCACGTGGTCCAATTTTCAGCTTGCCGTGATTTGCCGGTTG
AGCCGAAATACCTTAGGATTGAATTCTCTAATAAATTCATTTTTCATGTC
CCAGCAAATTGCATAAGCATCGTTTTGTCTCTAACCAATGTGTACTTCAT
TCAGTGTTCTTTTGGACATGGGTATGTTGGTGTTGCTCGCGCGATGAGGG
GTACGTAGAAATTTGGCCTAATATGGGGGTACGTGTGTGCGCCTTGATGT
CTTTTGCTTTTGTTTGTTTCGTGGGGTTTGATTGAATGCTGGTCGATCCC
TGACACTCGGAAGAGGAGGTCCACAACAACAAAAAGGCCCTAAATAGTGC
TATGGTATACAAATCATGTTGATTTTATTAGATTTTCACCTTTCTATATA
TGATAAATTCGGCCACCAACCTTTTCGCAACTTCCCGCAGATACGCGAGG
TAAGTTTTACCGCAGGTTAGTATTTTAGACGTGTGAGTGGTACGGTTGTT
TCGCTTGTGCAACGCATCAGTTCGATTTGCCCACTTAGTGGATACTACAA
ATTCCCCAAAAAACATTAACCGCACGTCAAACATCACGCCCTCTTGACAA
CATATACACGCCGCAAGATGTGCCAGGTATGATGCGATCCAGTCATCGAG
CGATCACCAATCGGCGAGTTTTAGTGCAAGATTTGAGGCACATACCTACC
TACACGGGGTACTTGCTGGCGGCAAAACACGTATAGAGCAATAATTACCT
TGTGCGTGCTGCTCTTGATCCAATATCGACGTTCCTTATTATTTGGACAG
ACCTCACAAGTATTGTGGTCGGAAAGAACGGCACAATATAGTACAGTGCA
GTACAGTACAGTACAGTACAGTACAGTACAGTACCAAGTTTATATATGCT
ATGTACGCCCCCGCCCCCTACATGTAATTTTGTGCACAAATTTCGTTCTG
CTTTTCGAACCCAGCACACAACAACTTCTCGGATGTCGCGCTTTTTGCAC
CCGGTGCAATGAGACAACTCAAGAACGCGGGAAGCATAGACGGAGTAACG
TTTCAAGATCAGGTGGGTAGACGGATTTCCCAAGGATGATGCAGGAGTGG
GAATATTGGATATTCTAGTTTCGAGAGTGTGAGCGAGGGCTACTAGTACT
GTGTAACGAAGGATAGCCCTTCTTGATGGTATTTTGTCATTAGTCAAGCT
CAATAGGTGCACACATTCGACAGTACTGCTTTGTGCGTCTTGGGAAGATG
TCGTCGACATGTGTCGCTAGGACGGGTTTGTCTCGGTAAATGTAGCGGTG
TTATTTGATTCAGGAGGAAAATCAAGTTCTGTTGTTACCGACAACAAAGG
CGCACTCTCGGGCTGGGTTCCCTCGTCGTCTATGCTATACATGTGCCTTG
TGTGCTTGCCCCACGACCCCAGCACAAATGGCATCGTCCAGAAATAGGAA
GCCAAAATTAGATGCCGTTGCTCTGAGCATAAGTATCCGTTGAAGAGATA
GTTGCATCGTAGGAAAATGACGCGGTACCCTGGATTTATCCGTGGTTCTC
CAGGTGGCTCGCTTATTGCTCTGCTCTCTTGAAGTCTTTCATCGGAGGCG
AACAGAATCAGGGGACGCGGATGGTACATCCCCTCCCTCTGACCTAGCTT
CGGTGGTGCTTGGCTCCGACTTGCCTGCAGTATTTCCCGAAGCTCGCGTG
AAGAGACTGTGCGCGGGTCGCGTGCTGCCTTCGAGGGACTATTCCTAATC
GCAAATGTCGATTTGATCGCATTTTGAAGGGTTAACAGTGGTAAATTCAG
CTCTACAAAATTCAGGCTGGTTTCTTTTAGACGCTTTTGGAGTGCTTGAG
TATCTACTTGGTTTGCCTTCTAAGGGCCTCCCATGGTGGCTTCATATTTA
TTCTCTCGTTTGTTTGTAATAGCTGCCAAGATTCAGATTTTATTTTGAAG
CTTTTACTTTCGACTCATAGTTTGTGTCGAATGGTGCGCGCGGGGGGCTG
AGAGCGAAGAGAAAAATGCAGTACAAATGAAAGAGATTTTTTTAAGCATC
GTGAACTATAACGTAATCCTCTCATGTCCTAGTTCGGCCATAGTCGGGCC
ACACCTCAATTTCCCGTGAAATGTATGAGTAGTGAACGCTAAGGCGTGAT
GGTAGGCAGTTGGTGCTAGGTCCTGGTCTATTTTCGTGGGATACGCAGGA
AACATTTTATGGTTGTTTCGGAACAGTATGTGTGTCCACGTGTGCTTCAT
TTAATAGCTGTTTTGATGTTCAGGGTTCCAAGAAAGTGGCGTTTTGTTCA
TGATGTGAGAGTTTTGAAAAGTCTGCGGATATTAGTCTCCCATGCCATCG
ACCCGTATCGTCTGGCTTGGCGTGCATCGAGCCAAGTTCCACTGAATCAC
TGTCCAAACTCTCAACTCTCTCCAAGTTAGGAAAGGCGTACCTATTATTC
ATAGACGACGGATACGAAAACGGGCACTTTTTCGTGCCAGCATTGCAACA
CTGTTCTTCTATAAGAATAGAGTATGCCTCACGACTCTTGTGCATCCTCG
GGGTGCCGTTGCGGTAAACCCAAGTACCGAGCTTAGCCAAATGCCTACAT
TCACGATTATGAGCGAAGTTGTGCTGCAAGTCGACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8646:2..3088+

>mRNA_H-paniculata_contig8646.16604.1 ID=mRNA_H-paniculata_contig8646.16604.1|Name=mRNA_H-paniculata_contig8646.16604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig8646:2..3088+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACAACTCAAGAACGCGGGAAGCATAGACGGAGTAACGTTTCAAGA
TCAGATGAGACAACTCAAGAACGCGGGAAGCATAGACGGAGTAACGTTTC
AAGATCAGGTGGCTCGCTTATTGCTCTGCTCTCTTGAAGTCTTTCATCGG
AGGCGAACAGAATCAGGGGACGCGGATGGTACATCCCCTCCCTCTGACCT
AGCTTCGGTGGTGCTTGGCTCCGACTTGCCTGCAGTATTTCCCGAAGCTC
GCGTGAAGAGACTGTGCGCGGGTCGCGTGCTGCCTTCGAGGGACTATTCC
TAAGTGGCTCGCTTATTGCTCTGCTCTCTTGAAGTCTTTCATCGGAGGCG
AACAGAATCAGGGGACGCGGATGGTACATCCCCTCCCTCTGACCTAGCTT
CGGTGGTGCTTGGCTCCGACTTGCCTGCAGTATTTCCCGAAGCTCGCGTG
AAGAGACTGTGCGCGGGTCGCGTGCTGCCTTCGAGGGACTATTCCTAA
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