mRNA_H-paniculata_contig8638.16596.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8638.16596.1
Unique NamemRNA_H-paniculata_contig8638.16596.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8638.16596.1 vs. uniprot
Match: A0A6H5K7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D3_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.100e-28
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 NVMVCRVAPPAIDFRGRLSRRHEALESWSLTRTVTCLHRRGMSWTAVYWFLWGLTQSLACQEC 189
            ++M CR APP + FRG+L RRHE L  WSLTRTVT LHR+GMSWTAVYWFLWGLTQ L C  C
Sbjct:   29 DMMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRC 91
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BLAST of mRNA_H-paniculata_contig8638.16596.1 vs. uniprot
Match: D8LHL4_ECTSI (DUF3342 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.200e-25
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 NVMVCRVAPPAIDFRGRLSRRHEALESWSLTRTVTCLHRRGMSWTAVYWFLWGLTQSLACQEC 189
            +VM CR APP + FRG+L RRHE L  WSLTRTVT LHR+GMSWTAVYWFLWGLTQ L C  C
Sbjct:  514 DVMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRC 576
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BLAST of mRNA_H-paniculata_contig8638.16596.1 vs. uniprot
Match: A0A835YQX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.200e-17
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    7 MVCRVAPPAIDFRGRLSRRHEALESWSLTRTVTCLHRRGMSWTAVYWFLWGLTQSLACQECG 192
            + C  APP +D RGRL RRH     WSLT  V  LH RGM+WT VYW LWG T++L C+ CG
Sbjct:  369 LTCARAPPLVDARGRLVRRHAPARPWSLTALVAALHARGMTWTEVYWLLWGATRTLRCRRCG 430
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8638.16596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7D3_9PHAE4.100e-2871.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHL4_ECTSI3.200e-2573.02DUF3342 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YQX4_9STRA1.200e-1756.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8638contigH-paniculata_contig8638:9810..10004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog2880.D8LHL4
Preferred nameKIAA1841
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF3342)
EggNOG OGs28J1Y@1,2QRE4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.8208468-CDS-H-paniculata_contig8638:9809..99981622931086.8208468-CDS-H-paniculata_contig8638:9809..9998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8638 9810..9998 -
1691481583.8215945-CDS-H-paniculata_contig8638:9809..99981691481583.8215945-CDS-H-paniculata_contig8638:9809..9998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8638 9810..9998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.850636-UTR-H-paniculata_contig8638:9998..100041622931086.850636-UTR-H-paniculata_contig8638:9998..10004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8638 9999..10004 -
1691481583.8355463-UTR-H-paniculata_contig8638:9998..100041691481583.8355463-UTR-H-paniculata_contig8638:9998..10004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8638 9999..10004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8638.16596.1prot_H-paniculata_contig8638.16596.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8638 9810..9998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8638.16596.1

>prot_H-paniculata_contig8638.16596.1 ID=prot_H-paniculata_contig8638.16596.1|Name=mRNA_H-paniculata_contig8638.16596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MVCRVAPPAIDFRGRLSRRHEALESWSLTRTVTCLHRRGMSWTAVYWFLW
GLTQSLACQECG*
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mRNA from alignment at H-paniculata_contig8638:9810..10004-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8638.16596.1 ID=mRNA_H-paniculata_contig8638.16596.1|Name=mRNA_H-paniculata_contig8638.16596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig8638:9810..10004- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGTGATGGTTTGCCGAGTCGCTCCTCCAGCGATAGACTTTCGCGGCAG
GCTGTCCAGGCGACACGAGGCCCTTGAGTCGTGGAGCTTGACGCGAACGG
TCACTTGCTTGCACCGGAGGGGCATGAGTTGGACCGCGGTGTACTGGTTC
CTGTGGGGACTTACGCAGTCGCTGGCTTGTCAAGAGTGCGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8638:9810..10004-

>mRNA_H-paniculata_contig8638.16596.1 ID=mRNA_H-paniculata_contig8638.16596.1|Name=mRNA_H-paniculata_contig8638.16596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig8638:9810..10004- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTGCCGAGTCGCTCCTCCAGCGATAGACTTTCGCGGCAGGCTGTC
CAGGCGACACGAGGCCCTTGAGTCGTGGAGCTTGACGCGAACGGTCACTT
GCTTGCACCGGAGGGGCATGAGTTGGACCGCGGTGTACTGGTTCCTGTGG
GGACTTACGCAGTCGCTGGCTTGTCAAGAGTGCGGGTGAATGGTTTGCCG
AGTCGCTCCTCCAGCGATAGACTTTCGCGGCAGGCTGTCCAGGCGACACG
AGGCCCTTGAGTCGTGGAGCTTGACGCGAACGGTCACTTGCTTGCACCGG
AGGGGCATGAGTTGGACCGCGGTGTACTGGTTCCTGTGGGGACTTACGCA
GTCGCTGGCTTGTCAAGAGTGCGGGTGA
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