mRNA_H-paniculata_contig8602.16566.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8602.16566.1
Unique NamemRNA_H-paniculata_contig8602.16566.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8602.16566.1 vs. uniprot
Match: A0A6H5KC60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC60_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.520e-15
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   76 VRPLTLAGAS-NSSALVNACRTENITIHDGVPLAAGSAAMTDGSLSTKFAAKLVVVSIAGDKTLLNPSTSTHARLNKLFQSVKDSLHPRGTVAIMVPHPWHLHAGRI 393
            VRP  L G S N + L++ CR EN T+HD VPL    + +    LS + A KLV+VSI  ++ LL  S +T+  L ++  +V+  +HP GT+A++VPHPW  H  R+
Sbjct:  363 VRPSLLGGPSGNEAVLMDKCRDENATLHDTVPLDPTGSDVD--KLSFRNAPKLVIVSIGAEQRLLKTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRL 467
[Close]
BLAST of mRNA_H-paniculata_contig8602.16566.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.450e-15
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   76 VRPLTLAGAS-NSSALVNACRTENITIHDGVPLAAGSAAMTDGSLSTKFAAKLVVVSIAGDKTLLNPSTSTHARLNKLFQSVKDSLHPRGTVAIMVPHPWHLHAGRI 393
            VRP  L G S N + L++ CR EN T+HD VPL    + +    LS + A KLV+VSI  ++ LL  S +T+  L ++  +V+  +HP GT+A++VPHPW  H  R+
Sbjct:  305 VRPSLLGGPSGNEAVLMDKCRDENTTLHDIVPLDPTGSDVD--KLSFRNAPKLVIVSIGAEQRLLRTSEATNTHLRRVIDNVRGRMHPDGTIALVVPHPWSAHFHRL 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8602.16566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC60_9PHAE4.520e-1542.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE9.450e-1542.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8602contigH-paniculata_contig8602:1928..2660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.7725234-CDS-H-paniculata_contig8602:1928..21931622931081.7725234-CDS-H-paniculata_contig8602:1928..2193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8602 1929..2193 -
1691481581.3649046-CDS-H-paniculata_contig8602:1928..21931691481581.3649046-CDS-H-paniculata_contig8602:1928..2193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8602 1929..2193 -
1622931081.7912045-CDS-H-paniculata_contig8602:2526..26601622931081.7912045-CDS-H-paniculata_contig8602:2526..2660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8602 2527..2660 -
1691481581.3752565-CDS-H-paniculata_contig8602:2526..26601691481581.3752565-CDS-H-paniculata_contig8602:2526..2660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8602 2527..2660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8602.16566.1prot_H-paniculata_contig8602.16566.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8602 1929..2660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8602.16566.1

>prot_H-paniculata_contig8602.16566.1 ID=prot_H-paniculata_contig8602.16566.1|Name=mRNA_H-paniculata_contig8602.16566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
RRRLATVHSSEQPVKKKARKTTSATVRPLTLAGASNSSALVNACRTENIT
IHDGVPLAAGSAAMTDGSLSTKFAAKLVVVSIAGDKTLLNPSTSTHARLN
KLFQSVKDSLHPRGTVAIMVPHPWHLHAGRIHS
back to top

mRNA from alignment at H-paniculata_contig8602:1928..2660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8602.16566.1 ID=mRNA_H-paniculata_contig8602.16566.1|Name=mRNA_H-paniculata_contig8602.16566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=733bp|location=Sequence derived from alignment at H-paniculata_contig8602:1928..2660- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGGAGGCTTGCGACAGTGCACTCCTCTGAGCAACCTGTGAAGAAGAA
AGCCCGGAAGACTACTTCTGCGACCGTTCGTCCTCTTACTCTTGCTGGTG
CCAGCAACTCTTCTGCCTTGGTGAACGCTTGCAGGTACAGTTTGGGGACG
AATAAATGTCGTTGTGTTGCTTTCTATGGATGCTAGACTTTGTTGTCATC
GTCAGGTAGGTAGTCAGTCTGCCTCTGTTGCTTGCATGTTTTACTTGTTA
GTCTTCCTCATATCAACCTGCATTACACCTGGCGTCAAAGTACAGGAGCT
CCGTTACATGTAGACTGCATGAGACTGCTTCATGTCTTCTACATGAATCA
CTGCATATTTATCCACAACAGTGTGTCCTCCATGGATTTCGCTTCACGAG
AATGATGATTGGCGTGCACGACCCCCATAACATCTACTACGTACCCTTAT
TTGTTGCTGCTACGAAGGACCGAGAACATTACTATTCATGACGGGGTGCC
TCTTGCAGCTGGGTCGGCGGCCATGACAGATGGAAGTCTGTCCACCAAGT
TTGCGGCCAAATTGGTAGTTGTCTCCATTGCAGGAGACAAGACCCTCCTC
AACCCTTCCACATCAACCCACGCCCGACTGAACAAACTATTCCAATCCGT
GAAAGACAGTCTGCACCCCCGTGGGACTGTTGCAATCATGGTACCTCACC
CTTGGCATCTGCACGCTGGACGCATCCACAGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8602:1928..2660-

>mRNA_H-paniculata_contig8602.16566.1 ID=mRNA_H-paniculata_contig8602.16566.1|Name=mRNA_H-paniculata_contig8602.16566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig8602:1928..2660- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGGAGGCTTGCGACAGTGCACTCCTCTGAGCAACCTGTGAAGAAGAA
AGCCCGGAAGACTACTTCTGCGACCGTTCGTCCTCTTACTCTTGCTGGTG
CCAGCAACTCTTCTGCCTTGGTGAACGCTTGCAGAGAAGGAGGCTTGCGA
CAGTGCACTCCTCTGAGCAACCTGTGAAGAAGAAAGCCCGGAAGACTACT
TCTGCGACCGTTCGTCCTCTTACTCTTGCTGGTGCCAGCAACTCTTCTGC
CTTGGTGAACGCTTGCAGGACCGAGAACATTACTATTCATGACGGGGTGC
CTCTTGCAGCTGGGTCGGCGGCCATGACAGATGGAAGTCTGTCCACCAAG
TTTGCGGCCAAATTGGTAGTTGTCTCCATTGCAGGAGACAAGACCCTCCT
CAACCCTTCCACATCAACCCACGCCCGACTGAACAAACTATTCCAATCCG
TGAAAGACAGTCTGCACCCCCGTGGGACTGTTGCAATCATGGTACCTCAC
CCTTGGCATCTGCACGCTGGACGCATCCACAGTGACCGAGAACATTACTA
TTCATGACGGGGTGCCTCTTGCAGCTGGGTCGGCGGCCATGACAGATGGA
AGTCTGTCCACCAAGTTTGCGGCCAAATTGGTAGTTGTCTCCATTGCAGG
AGACAAGACCCTCCTCAACCCTTCCACATCAACCCACGCCCGACTGAACA
AACTATTCCAATCCGTGAAAGACAGTCTGCACCCCCGTGGGACTGTTGCA
ATCATGGTACCTCACCCTTGGCATCTGCACGCTGGACGCATCCACAGT
back to top