mRNA_H-paniculata_contig8559.16532.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8559.16532.1
Unique NamemRNA_H-paniculata_contig8559.16532.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8559.16532.1 vs. uniprot
Match: D8LEM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM5_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.670e-14
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   73 MAPPLLDDGVDGGRQKNSRKIKRLRDVSCMQKRETRQDKWGRQRGGRKARWDKLDGHPSTLKSSRLRS 276
            M P L +DG    ++KNSRKIKRLRD SCM+ RET QD+WGRQRGGRKARWDK D  PS  KS RLRS
Sbjct:    1 MPPTLAEDGQQ--QRKNSRKIKRLRDASCMRTRETAQDRWGRQRGGRKARWDKWDRQPSAFKS-RLRS 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8559.16532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEM5_ECTSI5.670e-1469.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8559contigH-paniculata_contig8559:2212..8346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue4.1e-14
Seed eggNOG ortholog2880.D8LEM5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein phosphatase 2A regulatory B subunit (B56 family)
EggNOG OGs28KUT@1,2QWGD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1034
Cds size1032
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.1024196-CDS-H-paniculata_contig8559:2212..30611622931076.1024196-CDS-H-paniculata_contig8559:2212..3061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8559 2213..3061 -
1691481578.867244-CDS-H-paniculata_contig8559:2212..30611691481578.867244-CDS-H-paniculata_contig8559:2212..3061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8559 2213..3061 -
1622931076.1179037-CDS-H-paniculata_contig8559:8163..83461622931076.1179037-CDS-H-paniculata_contig8559:8163..8346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8559 8164..8346 -
1691481578.8772538-CDS-H-paniculata_contig8559:8163..83461691481578.8772538-CDS-H-paniculata_contig8559:8163..8346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8559 8164..8346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8559.16532.1prot_H-paniculata_contig8559.16532.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8559 2213..8346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8559.16532.1

>prot_H-paniculata_contig8559.16532.1 ID=prot_H-paniculata_contig8559.16532.1|Name=mRNA_H-paniculata_contig8559.16532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp
RRRGICVTDQQAVGFTTVLDVTHQMAPPLLDDGVDGGRQKNSRKIKRLRD
VSCMQKRETRQDKWGRQRGGRKARWDKLDGHPSTLKSSRLRSTVGRASTH
DFHLEETLLAAAAAAAAASPSNGHISGRGNDVVAAVDSDGDAEEEQDAGI
RDSLSLSTNSKNSNLGELHNGNSRDEGGGVGVAIMSTPSPNKRGLSSSTS
CFYSPPPFGQIQQRIIEDDILLTSSDSSDDEGSSTPGRAASTAVTAATVA
CPTILSRISPAKTSPNGSSVGSSSRQDFVGGGFISPTGRQHGLHTATGGR
TISGGASGSRGREQRPGGLGSGGGVRGGGSGRRYALRSSPSAAS
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mRNA from alignment at H-paniculata_contig8559:2212..8346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8559.16532.1 ID=mRNA_H-paniculata_contig8559.16532.1|Name=mRNA_H-paniculata_contig8559.16532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6135bp|location=Sequence derived from alignment at H-paniculata_contig8559:2212..8346- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCGACGGGGCATTTGTGTTACTGATCAGCAGGCAGTGGGGTTTACTAC
CGTGTTAGATGTCACACACCAAATGGCCCCCCCGTTACTGGACGATGGGG
TAGATGGGGGAAGGCAGAAGAACTCCAGAAAGATCAAGCGGTTAAGAGAT
GTTTCCTGTATGCAGAAGCGAGAAACAAGACAGGTATGTTGATTGGAACT
GGGAGCTGGAGCTGGTTTGGAGTTCAGCCCCACCGAAAAGACCATCGCTT
CCAACGTGTCATTTTTTTCAAACAGGTTGAAAATTGAAAGAGCCTAGGAA
CATTACATTCCATGATGGAATCGTGTGCTGTGCAAGTGACTAGATGAGTC
GCCGTTTGGCCAAAGAAGGACGAAAGCCCACCGCGCAGAGTACATTTGAC
CAGAGCTACCGCTGCAGTATTGCAAAGCCTTTCTCGGGCAACCTTTTATT
CGGATAAAAGTAGGTACAGACACTTGCTATTCTTGTTTACTGCAGTTGTC
TGTTGCTTAATCTGTCCATTTGTACAGACAGGAAATTGGTGTATACTGTC
TGTATCGGCCCATTCTGCTCTCCTTAAGCAAAATACATACATATCAAAGC
TGAATGTTGATTTTACCCTACATACACTTGACAGCTCTACAGTGACTCCT
TGTGCTGACACGAAGCTCTCTATAGGCTATGTCTGCTCGATGCCATTGCG
GTCACGTGACATCTAACGTCTACCCTTTGGCATACAAGCTAGCATCACAA
AAATAGTGTAGTAGTGAGTGGTACTGCAGACTGCCGTTACGTATTTGGAT
TTATTTCCGACAGCTGTAAATGGAATAAAAGAAAGAGGAAAGTTCGAAAG
TCTACACGAGGACACCAATTGAGAAATGGAGGCTGTTGGTCGCAGGGCGA
CGTAGACACTAACTACTGACTGCAGTGTGTAAATTGAAGTGTGCGCATTT
TCCATGAGCTACGAAACACATCGAGTACTGTGTGTGTGTTTGTGTGTGTG
TGTATATATATATATATATATATATACGGTATTTAGCTGAGCGACGGCAT
ATAAATTCATGTTTCTCAACTATTCTTCTCTGTCAACTGTATTACTGTAT
GTTGGCATGCGACGCGTGATGCGAACTCGGCACTTTTTCTCAAGCACGTA
GAGTACGTGCATGTTGATGGACGTCCGCCAAAAACACCCTGCTGTTCTTT
CTGAGCGGTGGCCTGTTTCCTCATCATGTACTTGGTCTCCCAGCACAGTC
AGTGAAGTGAAGTACAGGCGGTAACAGAATAGTTTCTCTACTCTCGTTGG
TTTCAGTTTGCACGGTGATGGTTCACCTGTGCTGTGCTGTGTGTCTCGTA
AATTTACGAATATCATGGAAGAGGCAGGTTGGAGAAAATGATCACTCCAA
TCGATCGATCAGTCTTTTTTCAGGGTTGTGTATGGGTCGTTTTTGTTGAT
ACACCATGTGTCCAAAGATTGTTGGATCCAATATGTTATTATTTTACCAA
TTTTGTGAAAACAGTTGGTGCAAGCGATGGCGAGTCAGCAGGTGCCACAG
GCATGAGTCTGGAGAAGCTTTACAAGTAGCCGCGAGCCAAATGCTCCCCT
CTCCCTGGCTGGTGAGCAGAAATAGCGAGTGGCGGCTCTTGAGGCAAAAT
AACACGCTTATCGGCTTCGTCTCTATTCAAAATCGTATTTCACATATGCA
GTAAAATACGTAGACAAGAAGTTCTTTTTTACCGAGCAAAATGGCAAACA
CGATAGGAAACGATCTAGTCTCTGGCAGAGGAGCTTATGCACGTGGTTTC
CTGATCTGTGTCGCCCCTGTCTGCTGTGTTGTGCTGTTCGTGTGCTCCAC
ATGATAGCTACATGACATTCACCAGGTGAACATTACTTGGAAAATGAATT
GAACAGGCCAACCTAGTTGCCACAGGTGGTAGCTGTATAAAGCCCATATA
ATTAACTCGTCGTACCCCTGTCAAGGTCATGACTCTAAATCCGAGTTGTG
TATGCCTGTCAGCCAAGTTAAATCAAGTCGGGGGGTGGGGGGTGGGGGTT
CGGTTATTATTATTTTTATTATTATTAATTTTTTAACCCCCAGAAGGCCA
AGGCAAAAACCTTTATCCGATGCTTCCATACAGAAGTATGGGGGCTCGGT
TATTTCTTGAAAATATGTTACGAACCTCCTCGTGCCACCGCTCAGATGCC
CTCATTTTGTACGAGGACTACTTCGTGATGATCCAGCGCGAATAAAATCG
AGGAATTCCGGGCGGCATTGGCTCACGCCTTGGGAGGACAGAGTGCCCGA
GCCGAGACAGGCGCTCGGTGATATGAATGAAATTGGGCCAAGACACAGAT
TTGGCGGCCCCGGCCGACAACGTGAGGAGGGTTCGAATATGGAGGGAACG
ATATCGTGAAACAGCTTACAGCTTCGCATCTACCGACGGTTCGGGCAGAA
TCAATTCGGATCATCAGCCACGGTGGAAACCTATCGGATATGAGGAATCA
ATATTTCCTTGTGGCTGAAGATTTGGCCAAGATGTAATACTGATGTTTGG
CTCCCTAAGCAGCAGCCTCCAAGATCATGAGTAGTCGTCCAGATCTTGAG
CCAAAGGAGAGATCGGCTTCGCAACGCTGGATTTATTCACCTTGGTCGAT
ATATCCAACTTGAGGCGCTGCTGATTTTCGGCTGCTGCTTAGAGCTACCT
CACGGGATCTTTCTCTTCCTCTCAAACTGTTGCGCCTTGCTGTCCGTCCT
GCCAAAGCCGTGCCTTGGACTCGTCTCGACCCGATTGCCGAGCGACTGAC
TGCCTCGGCTCGGGCTTCCTGTTCCATCTCCAATCGTGGATCATTGCTAA
AAGCGAATATATCCATAATGGGGGCCCTTTATATTTGAAGGGGTCATCCC
CGTTATTTCATGTCTGTCGACGAGAAATTCTGTTTTCAAATCTGTTAAGA
AAACACTCGCTTGGACAAGCATCATCTAGCCTAGTCGTCATCACTGTGTC
GTCGGCGCTGATCGTTTTATCTAACCGTAATTCGCTGACCGGTGGCTGCT
CGCGTGCTGTTTGCCAAAGGAATGCATGTAGTGGAGTCTAATTTACTCTG
GTGGTAATGGGATCGAATTTAAGTGATGATCTAAATGTGATCGAAAAAAG
AAAGGAACTCCGCACGCCTCGTGTGAACGATGCTCCGGTCATGCGCGATA
TCCCTCTCCAATGTCGGCGCCATCTTCCCTCGCCGCTACTCCCTTATTCT
GCACTTTCAAAAGTCTTCCATCATAAAGCGCGCGCAGGGTTGTGACTGAA
ACAAGCTTTGACCACCTGGATATATAGGAATAATTGGCGTAGTCACCGCG
AAAATGAAGAAATATTCGCCTGAGGCTCATAATGGGCTCGTGTATTCTGT
GTCCAGGATTATTCATGACGACGTGATACTCGTAAATCGAATGGATAGGA
GTGGGTACTTCATTTTATGTGTTTGCTCATTCTGAAACTCAGGCGAATAC
TTTTTATTATTCGTGACGAATAAGCTAATTATTCGTAGTTGTGCGTTGGG
TGCAAGCTGTATGGTTGAACATACCCTTTGGTATTACGTTTTAAATCCGA
TTTTCTCGAGATATAAAAACCTGCACGGCCGAGAAGCACGTGTATCGAAA
GATATGAACTGGATCTTTCCTAAAAATACCGCTATCGGTATCATGAGCGC
CATCGTTTTTGAGAAATCGAGTTTGACATAAAACGGCGTTTCGGTTTTTA
TTAAATACGTGTAAAGGGCTCATCCATGGACGAATACGAACACTGGGAGC
ATTCTTGACGAATTAAAAAGAAAAATAGGGGTTGCCCGAAGGTTCTCAAT
GTGGTCGCACGTGAAGTTAATTGTTAACCCCCTGTTAAGTAGTTCACTTG
TTTGAGTGTTAATATAACAGTCGTGAATAAATTATCCCGAGCATACAAAA
TAAACTTACTCATGTCGAACTTTTTAGGTGAGTAAATGTTTTGTTCGTCG
CGAATTCCACAGGTACTCACAGTCGTCCGGCGGGGGGCGCACGTTGTAAC
AGCATCTCTAATTTCAAGCAGACTGTCTTAACGAAACGTTGGTAATGAGC
TATTTATCTACTAGTAGTATCCAGTACAGCAGTGGCTCAGTCCCCCTCGC
CACTTGTAGGCAGGCAGGCAGAGTATCCAACGCAACCCTCACCCCCAAGG
AACATCACATTATCTTCATGACCAGCTAGCTCATTCATGAAAATGTTAGT
TTTTTTTCAAGCTTGTGTCGAGCGTGACGTCACTTTGAGTTTATCGACCC
AGTGGGTCGTGGCTCTTCTTTACTTCCGCGGTACATGAGAAGGAGTTCAG
CGACGAAGAGTCGGCAAGGTGGGCTTGCCCTCTCTCCCACTGAGGATGAC
CGAGGCTGCTCTTTAGGTGTCCGCTCGGTTGTTCATGCACCGTCAGATCT
TCGGTCGTTAAAGTGGCGTCAGCCGCAACCCTGGACCATCATGTCTTGAT
CAATTTTTTGGGGGCTTGGATGATTCAATGTGGTCTGGTCCGTTGGAAAG
GTTGTAAGACAGGCAGCCGAATAAGTCAGTCCGATAGCTGAAGAAATTCC
GAAAAGCTTCTTACAAACAGTCGAAATAAAAATGCGGCGGAACAATAAAA
CCCAGTTTTTTCGACAAACTGACTTGTACTGATTTCTCAAGCTAGGTAAA
TGTATCCCCACAAAGTTGATGACGCCAGCTTTCCCACGACACTCCACCCA
TCCCGTGCATCATCCGAGGACCGTAGATACAGTGAAGAACATGACGGCTA
TAATTGCGGTTCTGAGATCCAAGTATAAAAAATAGGGAAAAAGTAAGTCT
GTTTTAGAGTCACTATTATAATCCCACCGCATTTTTCAAATCAGCACAAC
AATTTACGTGAGCCAAGCCACAGCATAGGCCACCGCGTCTGTGAGCGCCA
ATGCACCTGTATTGAGTAGTGGTTCCCTCTCCACCATGGCCGAAAATAAT
ACATGATCCGAGTGTAATGTCTTCCACTTTTTTTGCAATCTCGGCTATTA
TTGACATGAAAAAATCCGAACTGGATGAAAAATTCGTTATTATGCGAAGA
GTTCAAAACGATTTGTACATTTATCTAATCGACTTCTGCCGGGGTAGTTG
CAGTTGATGTTATATTTCGGCCAAGACCCGCGCTCGACAAGGCTAAGATA
AATACCCTGAAAATAAAACTATTCCGAATTTGATTAACAGTAATGCACCC
TTATTTACCTACGTAAACACAATGTACTTTTTCAGGACAAATGGGGGCGG
CAACGAGGAGGCCGCAAGGCGCGCTGGGATAAGTTAGACGGGCATCCTTC
CACTCTCAAAAGCAGCAGGCTGCGCAGTACTGTGGGCAGAGCCTCCACAC
ACGACTTTCACCTGGAAGAGACTCTTCTAGCTGCCGCTGCCGCTGCCGCA
GCAGCATCGCCGTCCAACGGTCACATTAGCGGCCGTGGCAACGACGTCGT
AGCAGCTGTTGACTCCGATGGTGATGCTGAAGAAGAACAGGACGCAGGCA
TCCGAGATTCGCTTTCCCTCAGTACCAATAGTAAAAATTCAAACCTTGGC
GAGCTTCACAATGGCAATAGTAGGGATGAAGGCGGCGGGGTTGGTGTCGC
CATCATGAGCACCCCGTCACCCAACAAGCGGGGTTTGTCTTCATCCACCT
CGTGTTTTTACTCCCCGCCGCCCTTTGGCCAGATTCAACAAAGAATTATT
GAAGATGACATACTGCTGACGTCCTCTGACAGCAGTGACGACGAGGGTAG
TAGTACGCCTGGCCGCGCCGCCTCCACCGCGGTCACCGCTGCCACTGTCG
CATGTCCCACGATCCTTTCTCGTATAAGCCCGGCGAAAACCAGTCCCAAT
GGCAGTAGTGTTGGCAGCAGCAGCAGGCAAGATTTTGTTGGTGGGGGGTT
CATTTCTCCAACTGGACGACAGCATGGACTTCACACTGCCACCGGCGGCC
GCACCATCTCCGGGGGGGCGAGCGGTAGCAGGGGACGCGAACAGCGTCCC
GGCGGACTAGGCAGTGGGGGAGGCGTTCGAGGTGGGGGTTCTGGTCGGCG
GTATGCCTTGCGGTCGTCCCCGTCGGCGGCCTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig8559:2212..8346-

>mRNA_H-paniculata_contig8559.16532.1 ID=mRNA_H-paniculata_contig8559.16532.1|Name=mRNA_H-paniculata_contig8559.16532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at H-paniculata_contig8559:2212..8346- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCGACGGGGCATTTGTGTTACTGATCAGCAGGCAGTGGGGTTTACTAC
CGTGTTAGATGTCACACACCAAATGGCCCCCCCGTTACTGGACGATGGGG
TAGATGGGGGAAGGCAGAAGAACTCCAGAAAGATCAAGCGGTTAAGAGAT
GTTTCCTGTATGCAGAAGCGAGAAACAAGACAGAGGCGACGGGGCATTTG
TGTTACTGATCAGCAGGCAGTGGGGTTTACTACCGTGTTAGATGTCACAC
ACCAAATGGCCCCCCCGTTACTGGACGATGGGGTAGATGGGGGAAGGCAG
AAGAACTCCAGAAAGATCAAGCGGTTAAGAGATGTTTCCTGTATGCAGAA
GCGAGAAACAAGACAGGACAAATGGGGGCGGCAACGAGGAGGCCGCAAGG
CGCGCTGGGATAAGTTAGACGGGCATCCTTCCACTCTCAAAAGCAGCAGG
CTGCGCAGTACTGTGGGCAGAGCCTCCACACACGACTTTCACCTGGAAGA
GACTCTTCTAGCTGCCGCTGCCGCTGCCGCAGCAGCATCGCCGTCCAACG
GTCACATTAGCGGCCGTGGCAACGACGTCGTAGCAGCTGTTGACTCCGAT
GGTGATGCTGAAGAAGAACAGGACGCAGGCATCCGAGATTCGCTTTCCCT
CAGTACCAATAGTAAAAATTCAAACCTTGGCGAGCTTCACAATGGCAATA
GTAGGGATGAAGGCGGCGGGGTTGGTGTCGCCATCATGAGCACCCCGTCA
CCCAACAAGCGGGGTTTGTCTTCATCCACCTCGTGTTTTTACTCCCCGCC
GCCCTTTGGCCAGATTCAACAAAGAATTATTGAAGATGACATACTGCTGA
CGTCCTCTGACAGCAGTGACGACGAGGGTAGTAGTACGCCTGGCCGCGCC
GCCTCCACCGCGGTCACCGCTGCCACTGTCGCATGTCCCACGATCCTTTC
TCGTATAAGCCCGGCGAAAACCAGTCCCAATGGCAGTAGTGTTGGCAGCA
GCAGCAGGCAAGATTTTGTTGGTGGGGGGTTCATTTCTCCAACTGGACGA
CAGCATGGACTTCACACTGCCACCGGCGGCCGCACCATCTCCGGGGGGGC
GAGCGGTAGCAGGGGACGCGAACAGCGTCCCGGCGGACTAGGCAGTGGGG
GAGGCGTTCGAGGTGGGGGTTCTGGTCGGCGGTATGCCTTGCGGTCGTCC
CCGTCGGCGGCCTCCGACAAATGGGGGCGGCAACGAGGAGGCCGCAAGGC
GCGCTGGGATAAGTTAGACGGGCATCCTTCCACTCTCAAAAGCAGCAGGC
TGCGCAGTACTGTGGGCAGAGCCTCCACACACGACTTTCACCTGGAAGAG
ACTCTTCTAGCTGCCGCTGCCGCTGCCGCAGCAGCATCGCCGTCCAACGG
TCACATTAGCGGCCGTGGCAACGACGTCGTAGCAGCTGTTGACTCCGATG
GTGATGCTGAAGAAGAACAGGACGCAGGCATCCGAGATTCGCTTTCCCTC
AGTACCAATAGTAAAAATTCAAACCTTGGCGAGCTTCACAATGGCAATAG
TAGGGATGAAGGCGGCGGGGTTGGTGTCGCCATCATGAGCACCCCGTCAC
CCAACAAGCGGGGTTTGTCTTCATCCACCTCGTGTTTTTACTCCCCGCCG
CCCTTTGGCCAGATTCAACAAAGAATTATTGAAGATGACATACTGCTGAC
GTCCTCTGACAGCAGTGACGACGAGGGTAGTAGTACGCCTGGCCGCGCCG
CCTCCACCGCGGTCACCGCTGCCACTGTCGCATGTCCCACGATCCTTTCT
CGTATAAGCCCGGCGAAAACCAGTCCCAATGGCAGTAGTGTTGGCAGCAG
CAGCAGGCAAGATTTTGTTGGTGGGGGGTTCATTTCTCCAACTGGACGAC
AGCATGGACTTCACACTGCCACCGGCGGCCGCACCATCTCCGGGGGGGCG
AGCGGTAGCAGGGGACGCGAACAGCGTCCCGGCGGACTAGGCAGTGGGGG
AGGCGTTCGAGGTGGGGGTTCTGGTCGGCGGTATGCCTTGCGGTCGTCCC
CGTCGGCGGCCTCC
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