mRNA_H-paniculata_contig8540.16515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8540.16515.1
Unique NamemRNA_H-paniculata_contig8540.16515.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: D8LQA2_ECTSI (Cationic amino acid transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA2_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.490e-49
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 1
Query:    1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            +PL+VVL EA  D LVRHLTLFDLV+IGVA T+GSGIFA+VGLIGSTYAGP A+VSWVLAGI CV SGLSYAELSSIIPSEGG YAYAFVALGELPA +TAWCLTLE
Sbjct:   32 KPLAVVLMEASNDPLVRHLTLFDLVVIGVAGTVGSGIFAIVGLIGSTYAGPAAVVSWVLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIVTAWCLTLE 138          
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A7R9UE61_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE61_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.830e-33
Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            +PL+VV  E +  KL RHL+LFDL+ IG+  T+GSG+F L GLI   YAGP  ++SW+ AG  CV+SG++YAE+SS +PS G +YAY +VALGELPA +  WCLTLE
Sbjct:   34 KPLAVVEAEERGSKLGRHLSLFDLLCIGIGGTVGSGVFVLCGLIAHEYAGPAVVLSWLTAGFGCVLSGMNYAEMSSRVPSAGSSYAYTYVALGELPAVVAGWCLTLE 140          
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A835ZA89_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA89_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.750e-30
Identity = 58/107 (54.21%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            +PL V+  E    +L R L L+DLV IG+  T+GSG+F + GLIG   AGP  + SW++AG+ C++SG+++AE+SS++PS G AYAYA+VALGELPA + AWCL+LE
Sbjct:   41 KPLRVIHAEESCQELERTLGLWDLVAIGIGGTIGSGVFVMCGLIGGEVAGPAGVFSWLVAGLGCLLSGVAFAEMSSLVPSAGSAYAYAYVALGELPAVVIAWCLSLE 147          
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A2P4XYY0_9STRA (Amino Acid-Polyamine-Organocation (APC) Family (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYY0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.450e-30
Identity = 57/107 (53.27%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            +PL+V+  E   ++L R L+LFDLV IGV  T+GSG+F+  G I S  AGP A +SW++AG+ C ++ L+Y EL + +PS G  YAY+F ALGELPA I AW LTLE
Sbjct:   15 KPLAVIKVEEAAEELPRQLSLFDLVCIGVGGTVGSGVFSTTGEIISGTAGPAAFISWIIAGVVCCINALAYMELVTRVPSSGSTYAYSFYALGELPAVIAAWLLTLE 121          
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A7S2Q307_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q307_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.970e-29
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   49 RHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            RHL+LFDLV IGV  T+GSGIF L GLI  +YAGP   +SW+++GI  ++SG  YAELS  IPS G +YAYAFVALGELPA ITA+ LTLE
Sbjct:   88 RHLSLFDLVSIGVGGTIGSGIFVLNGLIAHSYAGPATFISWIVSGIAALLSGCCYAELSGRIPSAGSSYAYAFVALGELPAFITAFMLTLE 178          
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A1V9YWK7_9STRA (Amino Acid-Polyamine-Organocation (APC) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YWK7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.980e-29
Identity = 56/107 (52.34%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            +P+ V+  E ++++L R L L DL++IG+  T+GSG+FA  G I S+ AGP A +SWV+AG+ C++SG +Y E+SSIIPS G  YAY++  LGELPA + AW LTLE
Sbjct:   11 KPMEVIHAEERKEELPRELGLIDLILIGIGGTVGSGVFATTGDIISSAAGPAAFLSWVIAGVSCIISGFAYMEMSSIIPSSGSTYAYSYHILGELPAVVAAWLLTLE 117          
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A662X6M4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6M4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 8.340e-29
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            +PLSV+  E   + L R L+LFDL+ IG+  T+GSG+F+  G I S  AGP A VSWV+AG+ C ++ L+Y EL + +PS G  YAY+F ALGELPA + AW LTLE
Sbjct:   15 KPLSVIHAEEAAEDLPRQLSLFDLICIGIGGTVGSGVFSTTGDIISGTAGPAAFVSWVIAGVVCCINALAYMELVTRVPSSGSTYAYSFYALGELPAVVAAWLLTLE 121          
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A3F2RJM4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJM4_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.620e-28
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            +P+SV+  E   ++L RHL+LFDL+ IG+  T+GSG+F+  G I ST AGP A VSW++AG+ C ++ L+Y EL + IPS G  YAYA+ A+GELPA + AW LTLE
Sbjct:    8 KPMSVINAEEVAEELPRHLSLFDLLCIGIGSTVGSGVFSTSGEIISTTAGPAAFVSWIIAGLVCCINALAYMELVTCIPSSGSTYAYAYHAMGELPAVVAAWLLTLE 114          
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A3R7JQT9_9STRA (AA_permease_C domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JQT9_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.760e-28
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            +P+SV+  E   ++L RHL+LFDL+ IG+  T+GSG+F+  G I ST AGP A VSW++AG+ C ++ L+Y EL + IPS G  YAYA+ A+GELPA + AW LTLE
Sbjct:    8 KPMSVIHAEEVAEELPRHLSLFDLLCIGIGSTVGSGVFSTSGEIISTTAGPAAFVSWIIAGLVCCINALAYMELVTRIPSSGSTYAYAYHAMGELPAVVAAWLLTLE 114          
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A6G0X249_9STRA (AA_permease_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X249_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.180e-28
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAG----PGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
            +P+ V+L E ++++LVR L L+DL+ IG+  T+GSG+FA  G I S  AG    P A +SW +AGICC+VSG +Y E+SSIIPS G  YAY +  LGELPA + +W LTLE
Sbjct:   11 KPIEVILAEEKKEELVRELGLWDLIAIGIGGTVGSGVFATTGDIISGAAGGGAGPAAFLSWTIAGICCIVSGFAYMEMSSIIPSSGSTYAYVYHVLGELPAFVASWLLTLE 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQA2_ECTSI1.490e-4984.11Cationic amino acid transporter-like protein n=2 T... [more]
A0A7R9UE61_9STRA2.830e-3357.94Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZA89_9STRA3.750e-3054.21Amino acid permease-domain-containing protein n=1 ... [more]
A0A2P4XYY0_9STRA6.450e-3053.27Amino Acid-Polyamine-Organocation (APC) Family (Fr... [more]
A0A7S2Q307_9STRA1.970e-2965.93Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1V9YWK7_9STRA5.980e-2952.34Amino Acid-Polyamine-Organocation (APC) Family n=1... [more]
A0A662X6M4_9STRA8.340e-2953.27Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A3F2RJM4_9STRA1.620e-2853.27Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3R7JQT9_9STRA1.760e-2853.27AA_permease_C domain-containing protein n=2 Tax=Ph... [more]
A0A6G0X249_9STRA2.180e-2853.15AA_permease_C domain-containing protein n=1 Tax=Ap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8540contigH-paniculata_contig8540:341..2029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.6e-41
Seed eggNOG ortholog2880.D8LQA2
KEGG koko:K03294
KEGG TC2.A.3.2
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016020,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
EggNOG free text desc.amino acid transport
EggNOG OGsCOG0531@1,KOG1286@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.6014507-CDS-H-paniculata_contig8540:340..4821622931073.6014507-CDS-H-paniculata_contig8540:340..482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8540 341..482 +
1691481577.8606963-CDS-H-paniculata_contig8540:340..4821691481577.8606963-CDS-H-paniculata_contig8540:340..482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8540 341..482 +
1622931073.6214767-CDS-H-paniculata_contig8540:1850..20291622931073.6214767-CDS-H-paniculata_contig8540:1850..2029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8540 1851..2029 +
1691481577.8764467-CDS-H-paniculata_contig8540:1850..20291691481577.8764467-CDS-H-paniculata_contig8540:1850..2029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8540 1851..2029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8540.16515.1prot_H-paniculata_contig8540.16515.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8540 341..2029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8540.16515.1

>prot_H-paniculata_contig8540.16515.1 ID=prot_H-paniculata_contig8540.16515.1|Name=mRNA_H-paniculata_contig8540.16515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAG
PGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATIT
AWCLTLE
back to top

mRNA from alignment at H-paniculata_contig8540:341..2029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8540.16515.1 ID=mRNA_H-paniculata_contig8540.16515.1|Name=mRNA_H-paniculata_contig8540.16515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1689bp|location=Sequence derived from alignment at H-paniculata_contig8540:341..2029+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCGCTGTCGGTGGTGCTGACCGAGGCTCAGCAGGACAAGCTTGTTCG ACACCTGACGCTGTTTGACCTGGTTATCATTGGCGTGGCGAGGACCATGG GCAGCGGGATATTTGCCCTCGTCGGTCTCATCGGAAGCACGTGTGAGTTT TGAGCTTTTAGGAGTTGGTTGATATGGCGGATGATGGCAAATAGAGGCGA TTCTGGAGATTTGATTCATTAGTCCCCTCTAAAAAATCAGTGGTTGTTCT TCTTGAGTCGCAGGTATGTAGCCTTCCCCTGGAAATATCAGTTGTTGATT TATACAGGTGAGTGACAAGTCGAAGTTTTCGGAAAAAAAAAGTCACGCAC CGCAAAAGGGTTAGTTAATACACGTGAAATCCCCTGCAAACCTGCCCCAA CCTGCATATAAAACCCTGTCGGAAAAAAAAAACAAACTTGCATTAGTAAG GTGTTTCTACTCGTACTGTCGATAAAAAAAAAAAATCTAATCTAATCAAC CATCTTTCAGGTAGACAAAAAAAAACACCTGAGGAAAACACATATTTGCT ACAATATATTATCATAACCGTTGTCAACCTGAAATCATGACCGTTGTCAT TTTTTTTTTTTTTTTTTCAACATACAAATTATGATGTTTTACTTGCGGTA CCGCAGATGTCGTTCTGAATATTTCATTACCAAGCTCTTGCTTGCATTGG CAGTGTTTGGTCACAGGTGAATACACAGCGCGGGGAAACAATTGCTAATA GTTGCTCGGTGTCGTTTCTTGGTTTGTTTTTGGCGGAAAACAGCACACTG TTTTTTCGTACACACCTGTACGGGTGATGGTGATGCTGCTACTTAGCGCT TCCGGTGCTCTGTTGTACTGTCTATCCTCTTCACAGTACAGTGTGTGCCC GTGTGTAGGTGCCATGGCGACAAGACACGTGATATTAGATTAGGCAATTC TCCGCGTCACCCGCCACGTGGGACCGGAATGGGACTCGCTGCTGCGATGA CCGCTCCATCGCATCGTCCGTTTTTTGGCCTCCCGTGTACGGAGTGCGCG GCAGGGTCATCTCTCTATGTATCTATATAAATACCCCGTACTTTGCAATA TGAGCGGGACAATCCTGGGTGGCATCGCTTTTTAAATTTGATATTTCTCG GAAAGTTGCGATCCGAACTGGTTCAAAATCACCGCGCAGAGGTTGATTGT GATCGTCACGTTGTCAAAATTGCATGTTTCCTCCTCTTGTGCCCCCCCCC CCCCTTTCCCCCCGTTGTGCGTGTTCTCTATTTTTTTTTTTATCCATTGC TGTTTTACGCATCACGCGTCCTCTTGAAAACTATGCGTCGTTATCTCTTG GCGCGTTTGTCATGAACGGATCGACATGTGTTATGTCCCATTCTTGTGTG TGATGGGATTAATGGATATTTGGGCCGGTGGATCGTTCAACGGACCGGTG GATCCATAAATATAATATTGGTGGGTAAATCATTCGATGTCGTAATTGGA ATCGTGGCAGATGCGGGACCAGGGGCGATCGTGAGCTGGGTGCTCGCGGG GATCTGCTGCGTCGTCAGCGGCCTGTCGTACGCGGAGCTTTCGTCTATTA TTCCGTCCGAGGGCGGTGCTTACGCGTACGCCTTCGTTGCCCTCGGCGAG CTGCCCGCTACGATTACGGCGTGGTGTCTCACGTTGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8540:341..2029+

>mRNA_H-paniculata_contig8540.16515.1 ID=mRNA_H-paniculata_contig8540.16515.1|Name=mRNA_H-paniculata_contig8540.16515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig8540:341..2029+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCGCTGTCGGTGGTGCTGACCGAGGCTCAGCAGGACAAGCTTGTTCG
ACACCTGACGCTGTTTGACCTGGTTATCATTGGCGTGGCGAGGACCATGG
GCAGCGGGATATTTGCCCTCGTCGGTCTCATCGGAAGCACGTAGGCCGCT
GTCGGTGGTGCTGACCGAGGCTCAGCAGGACAAGCTTGTTCGACACCTGA
CGCTGTTTGACCTGGTTATCATTGGCGTGGCGAGGACCATGGGCAGCGGG
ATATTTGCCCTCGTCGGTCTCATCGGAAGCACGTATGCGGGACCAGGGGC
GATCGTGAGCTGGGTGCTCGCGGGGATCTGCTGCGTCGTCAGCGGCCTGT
CGTACGCGGAGCTTTCGTCTATTATTCCGTCCGAGGGCGGTGCTTACGCG
TACGCCTTCGTTGCCCTCGGCGAGCTGCCCGCTACGATTACGGCGTGGTG
TCTCACGTTGGAGATGCGGGACCAGGGGCGATCGTGAGCTGGGTGCTCGC
GGGGATCTGCTGCGTCGTCAGCGGCCTGTCGTACGCGGAGCTTTCGTCTA
TTATTCCGTCCGAGGGCGGTGCTTACGCGTACGCCTTCGTTGCCCTCGGC
GAGCTGCCCGCTACGATTACGGCGTGGTGTCTCACGTTGGAG
back to top