mRNA_H-paniculata_contig8540.16515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: D8LQA2_ECTSI (Cationic amino acid transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA2_ECTSI) HSP 1 Score: 176 bits (445), Expect = 1.490e-49 Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 1
Query: 1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
+PL+VVL EA D LVRHLTLFDLV+IGVA T+GSGIFA+VGLIGSTYAGP A+VSWVLAGI CV SGLSYAELSSIIPSEGG YAYAFVALGELPA +TAWCLTLE
Sbjct: 32 KPLAVVLMEASNDPLVRHLTLFDLVVIGVAGTVGSGIFAIVGLIGSTYAGPAAVVSWVLAGIGCVFSGLSYAELSSIIPSEGGTYAYAFVALGELPAIVTAWCLTLE 138
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A7R9UE61_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE61_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.830e-33 Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = 1
Query: 1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
+PL+VV E + KL RHL+LFDL+ IG+ T+GSG+F L GLI YAGP ++SW+ AG CV+SG++YAE+SS +PS G +YAY +VALGELPA + WCLTLE
Sbjct: 34 KPLAVVEAEERGSKLGRHLSLFDLLCIGIGGTVGSGVFVLCGLIAHEYAGPAVVLSWLTAGFGCVLSGMNYAEMSSRVPSAGSSYAYTYVALGELPAVVAGWCLTLE 140
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A835ZA89_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA89_9STRA) HSP 1 Score: 122 bits (306), Expect = 3.750e-30 Identity = 58/107 (54.21%), Postives = 81/107 (75.70%), Query Frame = 1
Query: 1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
+PL V+ E +L R L L+DLV IG+ T+GSG+F + GLIG AGP + SW++AG+ C++SG+++AE+SS++PS G AYAYA+VALGELPA + AWCL+LE
Sbjct: 41 KPLRVIHAEESCQELERTLGLWDLVAIGIGGTIGSGVFVMCGLIGGEVAGPAGVFSWLVAGLGCLLSGVAFAEMSSLVPSAGSAYAYAYVALGELPAVVIAWCLSLE 147
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A2P4XYY0_9STRA (Amino Acid-Polyamine-Organocation (APC) Family (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYY0_9STRA) HSP 1 Score: 115 bits (287), Expect = 6.450e-30 Identity = 57/107 (53.27%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
+PL+V+ E ++L R L+LFDLV IGV T+GSG+F+ G I S AGP A +SW++AG+ C ++ L+Y EL + +PS G YAY+F ALGELPA I AW LTLE
Sbjct: 15 KPLAVIKVEEAAEELPRQLSLFDLVCIGVGGTVGSGVFSTTGEIISGTAGPAAFISWIIAGVVCCINALAYMELVTRVPSSGSTYAYSFYALGELPAVIAAWLLTLE 121
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A7S2Q307_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q307_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.970e-29 Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 1
Query: 49 RHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
RHL+LFDLV IGV T+GSGIF L GLI +YAGP +SW+++GI ++SG YAELS IPS G +YAYAFVALGELPA ITA+ LTLE
Sbjct: 88 RHLSLFDLVSIGVGGTIGSGIFVLNGLIAHSYAGPATFISWIVSGIAALLSGCCYAELSGRIPSAGSSYAYAFVALGELPAFITAFMLTLE 178
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A1V9YWK7_9STRA (Amino Acid-Polyamine-Organocation (APC) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YWK7_9STRA) HSP 1 Score: 118 bits (296), Expect = 5.980e-29 Identity = 56/107 (52.34%), Postives = 79/107 (73.83%), Query Frame = 1
Query: 1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
+P+ V+ E ++++L R L L DL++IG+ T+GSG+FA G I S+ AGP A +SWV+AG+ C++SG +Y E+SSIIPS G YAY++ LGELPA + AW LTLE
Sbjct: 11 KPMEVIHAEERKEELPRELGLIDLILIGIGGTVGSGVFATTGDIISSAAGPAAFLSWVIAGVSCIISGFAYMEMSSIIPSSGSTYAYSYHILGELPAVVAAWLLTLE 117
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A662X6M4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X6M4_9STRA) HSP 1 Score: 114 bits (285), Expect = 8.340e-29 Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 1
Query: 1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
+PLSV+ E + L R L+LFDL+ IG+ T+GSG+F+ G I S AGP A VSWV+AG+ C ++ L+Y EL + +PS G YAY+F ALGELPA + AW LTLE
Sbjct: 15 KPLSVIHAEEAAEDLPRQLSLFDLICIGIGGTVGSGVFSTTGDIISGTAGPAAFVSWVIAGVVCCINALAYMELVTRVPSSGSTYAYSFYALGELPAVVAAWLLTLE 121
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A3F2RJM4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJM4_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.620e-28 Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query: 1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
+P+SV+ E ++L RHL+LFDL+ IG+ T+GSG+F+ G I ST AGP A VSW++AG+ C ++ L+Y EL + IPS G YAYA+ A+GELPA + AW LTLE
Sbjct: 8 KPMSVINAEEVAEELPRHLSLFDLLCIGIGSTVGSGVFSTSGEIISTTAGPAAFVSWIIAGLVCCINALAYMELVTCIPSSGSTYAYAYHAMGELPAVVAAWLLTLE 114
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A3R7JQT9_9STRA (AA_permease_C domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JQT9_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.760e-28 Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query: 1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGPGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
+P+SV+ E ++L RHL+LFDL+ IG+ T+GSG+F+ G I ST AGP A VSW++AG+ C ++ L+Y EL + IPS G YAYA+ A+GELPA + AW LTLE
Sbjct: 8 KPMSVIHAEEVAEELPRHLSLFDLLCIGIGSTVGSGVFSTSGEIISTTAGPAAFVSWIIAGLVCCINALAYMELVTRIPSSGSTYAYAYHAMGELPAVVAAWLLTLE 114
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Match: A0A6G0X249_9STRA (AA_permease_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X249_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.180e-28 Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 1 RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAG----PGAIVSWVLAGICCVVSGLSYAELSSIIPSEGGAYAYAFVALGELPATITAWCLTLE 321
+P+ V+L E ++++LVR L L+DL+ IG+ T+GSG+FA G I S AG P A +SW +AGICC+VSG +Y E+SSIIPS G YAY + LGELPA + +W LTLE
Sbjct: 11 KPIEVILAEEKKEELVRELGLWDLIAIGIGGTVGSGVFATTGDIISGAAGGGAGPAAFLSWTIAGICCIVSGFAYMEMSSIIPSSGSTYAYVYHVLGELPAFVASWLLTLE 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8540.16515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8540.16515.1 >prot_H-paniculata_contig8540.16515.1 ID=prot_H-paniculata_contig8540.16515.1|Name=mRNA_H-paniculata_contig8540.16515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp RPLSVVLTEAQQDKLVRHLTLFDLVIIGVARTMGSGIFALVGLIGSTYAGback to top mRNA from alignment at H-paniculata_contig8540:341..2029+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8540.16515.1 ID=mRNA_H-paniculata_contig8540.16515.1|Name=mRNA_H-paniculata_contig8540.16515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1689bp|location=Sequence derived from alignment at H-paniculata_contig8540:341..2029+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8540:341..2029+ >mRNA_H-paniculata_contig8540.16515.1 ID=mRNA_H-paniculata_contig8540.16515.1|Name=mRNA_H-paniculata_contig8540.16515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig8540:341..2029+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |