mRNA_H-paniculata_contig8534.16506.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: A0A6H5JSJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ9_9PHAE) HSP 1 Score: 334 bits (857), Expect = 1.610e-104 Identity = 180/310 (58.06%), Postives = 221/310 (71.29%), Query Frame = 1
Query: 1 DGGEDHRAASLEVVQANECKGHSKSITCVRFHMSGAVVLTASKDGTCRLWDWRRNSQAAVLATTSGLPYSVH---APQVMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKFRIGQENSASAGGDGAIECNVEPSKVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLAFAPQAAGTALRGFDLLAGSADYKITLFKSQGSAVKLAGAQVLGAVWWLIVTTVTVIFWILRTIVSVVMTVIPLIGLCAIGAAVFYYPTNLYDVLAITLGLDATEE--GSWEDTDRGPVI 915
DG E R SL V + CKGH K +TCVRFH SGA++LTASKDGTCRLWD R S+AA+L TTSGLP + AP +MCR+CCF+P+RP+ I+SVQS RG AYVTEW++ + ++ A GG G + C V+P KV VSPHP T+LSVR DG RLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGL FA + G AL G+DLLAGSADYKI+LFKSQGSA KLA Q++ +W L+V I W++RT +++ +TVIP++GL A+ AV Y P L + + + A EE G D D P +
Sbjct: 172 DGREGERPPSLSVRMVHACKGHEKPVTCVRFHPSGALMLTASKDGTCRLWDCERGSEAALLPTTSGLPPTASIAKAPVIMCRSCCFSPDRPDAIFSVQSEGRGNAYVTEWRYSVRPDDDAP-GGRG-VACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFATREVGAALGGYDLLAGSADYKISLFKSQGSATKLALRQMMVLLWSLVVFVFKAISWLVRTALTLTLTVIPMMGLVALVLAVVYRPEELAAAVRVLI---AQEENLGLEADPDSEPPV 476
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: D7G743_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G743_ECTSI) HSP 1 Score: 296 bits (759), Expect = 1.030e-90 Identity = 150/228 (65.79%), Postives = 174/228 (76.32%), Query Frame = 1
Query: 1 DGGEDHRAASLEVVQANECKGHSKSITCVRFHMSGAVVLTASKDGTCRLWDWRRNSQAAVLATTSGLP---YSVHAPQVMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKFRIGQENSASAGGDGAIECNVEPSKVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLAFAPQAAGTALRGFDLLAGSADYKITLFKSQGSAVKLA 675
DG E R SL V + CKGH K +TCVRFH SGA+VLTASKDGTCRLWD R S+AA+L TTSGLP + AP +MCR+CCF+P++P+ I+SVQS RG AYVTEW++ + ++ A GG G + C V+P KV VSPHP T+LSVR DG RLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGL FA + G AL G+DLLAGSADYKI+LFKSQG LA
Sbjct: 172 DGREGERPPSLSVHMVHACKGHEKPVTCVRFHPSGALVLTASKDGTCRLWDCERGSEAALLPTTSGLPPTASTAKAPVIMCRSCCFSPDKPDAIFSVQSGGRGNAYVTEWRYSVRPDDDAP-GGRG-VACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFASREVGAALGGYDLLAGSADYKISLFKSQGDKPVLA 397
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: A0A7S2AI78_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AI78_9STRA) HSP 1 Score: 121 bits (304), Expect = 3.810e-26 Identity = 77/221 (34.84%), Postives = 110/221 (49.77%), Query Frame = 1
Query: 1 DGGEDHRAASLEVVQANECKGHSKSITCVRFHMSGAVVLTASKDGTCRLWDWRRNSQAAVLATTSGLPYSVHAPQ---VMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKFRIGQENSASAGGDGAIECNVEPSKVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLAFAPQAA-GTALRGFDLLAGSADYKITLFKS 651
D ED ++ L++ + E KGH K I + F+ SG V +ASKDGTCR+WD + L G+P ++ VMCR C F+P+ +++VQ A RG +YVT W + N G K + P+ L++R DG A G+V G ++++ + P H L VTGL+F P A+ G A FDLL GSAD + L S
Sbjct: 166 DASEDKSSSLLKISKPLELKGHRKPIESICFNPSGLRVCSASKDGTCRIWDAVKGDCLHELPAADGIPATIVKKMTYNVMCRVCAFSPDGAK-VFTVQGACRGDSYVTRWDLTDDKVNLEKVG--------------KLSTGTPIKCLAIRSDGLFAAAGDVTGNIVLFDTASLKTIKSEPLHQLTVTGLSFRPSASEGDA---FDLLTGSADKTVMLASS 368
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: A0A7S2EE33_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EE33_TRICV) HSP 1 Score: 107 bits (267), Expect = 2.360e-22 Identity = 80/234 (34.19%), Postives = 113/234 (48.29%), Query Frame = 1
Query: 52 ECKGHSKSITCVRFHMSGAVVLTASKDGTCRLWDWRRNSQAAVLATT------SGLPYSVHA------PQ-VMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKF-RIGQ-ENSASAGGDGAIECNVEPS-------KVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRLPGFAKVMEYP-AHDLPVTGLAFAPQAAGTALRG-------FDLLAGSADYKITLFKSQGSA 663
EC GH ++ V FH GA VL+++KDGT RLWD R Q L + G P A PQ ++ R C F +Y+V S +GKAY+ +W R G+ + G DG + V P +V C S P+++LS+ GD + LA+G V+GTV ++ + +P HDLPVT +A P + AL G FD + SAD +I + Q A
Sbjct: 14 ECGGHGAAVCSVSFHPRGAAVLSSAKDGTARLWDARSGEQLHELKCSVDPINRDGTPAPKPAQKKNARPQKILVRGCAFGDLEGKRVYTVASGRKGKAYLAKWSLVRAGKAQPPPQPGPDGKMPPFVPPPMVFREDRRVSC-SDVPISSLSLSGDASILALGGVDGTVTLFDVEVMKPAKSFPEVHDLPVTCVAARPVPSNMALPGDEDAGVLFDCASASADNRIAMLTRQRRA 246
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: B8CFV5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFV5_THAPS) HSP 1 Score: 109 bits (272), Expect = 2.280e-21 Identity = 75/248 (30.24%), Postives = 118/248 (47.58%), Query Frame = 1
Query: 13 DHRAASLEVVQANECKGHSKSITCVRFHMSGAVVLTASKDGTCRLWDWRRNSQAAVLAT-----TSGLPYSVHA----------------PQVMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKFRI----GQENSASAGGDGAIECNVEPS--------KVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLAFAPQAAGTALRG-------FDLLAGSADYKI 636
+ A +L+ + EC GH+K+I V FH G VL+++KDGT R++ + V+ P + A PQ++ R C + IY++ S RG AY+T+W+ + N+A GG A N + +V+C SP P++ ++ DGT LA+G+VEG+VL+Y L + + ++ HDLPVT LA P L G FD ++ SAD ++
Sbjct: 219 EENATTLQFHKVAECHGHTKAICAVNFHPRGMQVLSSAKDGTARVFCTESGVELGVMTCEVHDPNGPPPLKIDANAAAGKTKDPRMMKRPPQILVRGCAYGDLEGKTIYTIASGKRGAAYLTKWRTLVPLNSAPPNTAGGGGGPASATNPTTANMSFRQEYRVQC-SPVPISATALSSDGTLLALGSVEGSVLLYNLEKQSVMKQFEGHDLPVTCLAARPIPNVLMLPGELEGGVNFDAVSASADNRL 465
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: A0A6T5VQI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VQI7_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.610e-14 Identity = 62/208 (29.81%), Postives = 97/208 (46.63%), Query Frame = 1
Query: 34 EVVQANECKGHSKSITCVRFHMSGAVVLTASKDGTCRLWDWRRNSQAAVLATTSGL-PYSVHAPQVMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKFRIGQENSASAGGDGAIECNVEPSKVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLAFAPQAAGTALRGFDLLAGS--ADYKITLFK 648
++ Q H +I + H +V+++SKDG+C+LW+ + L S + CR CF+ + +L YS+QS RG Y+ + I ++NS S + +++ KV VS P T L + LA+G+ +G+++V KV HDLPVTGL FAP D + S ADYK+T +
Sbjct: 95 KIDQVYSITAHKAAIMDLSIHPLEPIVVSSSKDGSCKLWNIDNGELINEIPNARNLMKKSDPKLSIECRGSCFSIDGLHL-YSIQSGKRGSTYLFDRLITIQRDNSTSK-----LTVDIKVLKVIEVSRVPCTKLKTNDKTSHLAIGSSDGSIVVVTTSNLKKVYSKQFHDLPVTGLGFAPIILADE-EEVDCIVNSCSADYKLTTIR 295
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: A0A7S1V1F6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V1F6_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 6.300e-14 Identity = 64/222 (28.83%), Postives = 113/222 (50.90%), Query Frame = 1
Query: 34 EVVQANECKGHSKSITCVRFHM-SGAVVLTASKDGTCRLWDWRRNSQAAVL--------ATTSGLPY--SVHAPQVMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKFRIGQENSASAGGDGAIECNVEPSKVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRLPGFAKVMEYP-AHDLPVTGLAFAPQAAGTALRG-------FDLLAGSADYKITL 642
E ++ +GH K++ ++F + + ++L+++KDGT RLW R+ AVL A S P S PQ++ R C F ++++V S +GKA++T W +GQ S G D + + + P++ +++ GDG LA+G V G+++++ + K+ +P H+LPVT +A P T L+G F ++ SAD ++ L
Sbjct: 15 EFTHVHKLEGHIKAVCGLQFALRTHGLILSSAKDGTARLW--RKGQSNAVLKCDITDPTARKSKAPKRRSTRPPQILVRGCAFGDLEGKVVFTVASGRKGKAFLTRW---MGQGPS---GSDYICQ------ERTAIHDFPISAMNLSGDGALLALGAVNGSIILFDAQKWKKLRVWPEVHELPVTCIAARPYP--TPLQGEEEDGIQFHAISCSADSQMAL 220
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: A0A1E7FWW6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWW6_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.270e-11 Identity = 56/205 (27.32%), Postives = 98/205 (47.80%), Query Frame = 1
Query: 109 VVLTASKDGTCRLWDWRRNSQAAVLATT----SGLPYSVHAPQVMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKFRIGQENSASAGGDGAIECNVEPSKVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRLPGFAKVMEY-PAHDLPVTGLAFAP-----QAAGTALRGFDLLAGSADYKITLFKSQGSAVKLAGAQVLG 693
+++++SKDGT R+W +R+ VL T G P ++ R C F ++Y+V S RG A++++W F + EC + C S HPV+ +S+ D T LA+GN EG+VL++ + + + + HD PVT +A P + ++ F+ ++ SAD ++ +Q K ++ G
Sbjct: 1 MIVSSSKDGTARVW--KRDECIGVLKCTVTDPRGPPPKKPQKFIVVRGCAFGDLEGKVVYTVASGKRGSAFLSKWAFDETKNQ---------FECF---DRTVC-SDHPVSAMSMSSDATALALGNSEGSVLLFNILKWKPIKTFLNVHDFPVTCIAARPYEVPLKGEDKSMIRFNAVSASADAQLARLTTQRRVPKSGSSRSAG 190
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: A0A7S2UEI3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEI3_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.160e-11 Identity = 66/251 (26.29%), Postives = 114/251 (45.42%), Query Frame = 1
Query: 58 KGHSKSITCVRFHMSGAVVLTASKDGTCRLWDWRRNSQAAVLATTSGLPYSV-------------HAP---------QVMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKFRI-----GQENSASAGGDGAIECNVEPSKVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRL----PGFAKVMEYPAHDLPVTGLAFAP-----------QAAGTALRGFDLLAGSADYKITLFKSQGSAVKLAGAQ 684
+GHSK++ V F +L+++KDGT R+WD +++ + ++ P AP QV+ R C + +IY+V S R A++T+WK + G S +G KV C +P PV+++S+ GD + +A+G V+GT+ ++ L P K E H+LPVT +A P + G +++ +D+++ SAD ++ Q + K Q
Sbjct: 117 EGHSKAVCAVTFSPRANHILSSAKDGTARIWDANLQTKSLQASVSNATPLQALCVLNCPPPEEPKGAPPKRGKKGPQQVLVRGCAYGDLEGKVIYTVSSGRRSVAHLTKWKQLVPLAFKGSSTSPPLQYNGTH-------KVVC-APCPVSSMSLSGDASFVALGRVDGTISLFGLTKESPELWKQFE-TIHELPVTCVAARPVPLPLPGEVSEEYCGASIQ-YDVMSASADNQLAHLSRQRAPRKRRSTQ 357
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Match: A0A0V0QL88_PSEPJ (WD40-repeat-containing domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QL88_PSEPJ) HSP 1 Score: 58.9 bits (141), Expect = 1.150e-5 Identity = 44/183 (24.04%), Postives = 84/183 (45.90%), Query Frame = 1
Query: 28 SLEVVQANECKGHSKSITCVRFHMSGAVVLTASKDGTCRLWDWRRNSQAAVLATTSGLP---YSVHAPQVMCRACCFAPNRPNLIYSVQSASRGKAYVTEWKFRIGQENSASAGGDGAIECNVEPSKVKCVSPHPVTTLSVRGDGTRLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLAF 567
++++ + +E H+KSI + FH+ +V+TAS DGTCR+++ + + L T Y H+ F+P+ I+++Q+ RG +Y++ W I +E+ +++ +K+ HPVT + +G L +G +G + HD+ V G+ F
Sbjct: 115 NIKIEKYHEFNSHTKSINSLDFHVEQDLVMTASDDGTCRIFNIPKKMEIKKLQLTDQATFENYKFHSAY-------FSPDEKT-IFTIQNPMRGASYMSVWT--IEKEDIQ----------HIQNTKLH---KHPVTASCISKEGLFLGIGTGDGAAKTINTRYYDIESSKHPHDMVVKGIDF 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8534.16506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8534.16506.1 >prot_H-paniculata_contig8534.16506.1 ID=prot_H-paniculata_contig8534.16506.1|Name=mRNA_H-paniculata_contig8534.16506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp MSGAVVLTASKDGTCRLWDWRRNSQAAVLATTSGLPYSVHAPQVMCRACCback to top mRNA from alignment at H-paniculata_contig8534:178..9577+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8534.16506.1 ID=mRNA_H-paniculata_contig8534.16506.1|Name=mRNA_H-paniculata_contig8534.16506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9400bp|location=Sequence derived from alignment at H-paniculata_contig8534:178..9577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8534:178..9577+ >mRNA_H-paniculata_contig8534.16506.1 ID=mRNA_H-paniculata_contig8534.16506.1|Name=mRNA_H-paniculata_contig8534.16506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig8534:178..9577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |