mRNA_H-paniculata_contig8523.16494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8523.16494.1
Unique NamemRNA_H-paniculata_contig8523.16494.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8523.16494.1 vs. uniprot
Match: D7FKF3_ECTSI (HSCB_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKF3_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.010e-31
Identity = 66/94 (70.21%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    1 MRLLGSSALEEESAAEDGPLVPPAFLMKVMESREQLEHCSSTEEAEAILKQTRAASDQCLKTMDVALKAGGGKDELADAAVRLRYFYRIEDEAR 282
            MRLLGS+ALEEE   +D   VP  FLM+VME+RE LE CSS EEAEAIL +T  A ++CL  MD  LKAGGGKDEL+DAAVRLRY YRIEDEAR
Sbjct:  207 MRLLGSTALEEEGE-DDRTSVPMDFLMEVMETREALEGCSSKEEAEAILSETSVAVEECLSGMDEVLKAGGGKDELSDAAVRLRYLYRIEDEAR 299
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8523.16494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKF3_ECTSI5.010e-3170.21HSCB_C domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8523contigH-paniculata_contig8523:248..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.4e-25
Seed eggNOG ortholog2880.D7FKF3
Preferred nameHSCB
KEGG rclassRC00074,RC00514
KEGG koko:K01489,ko:K04082,ko:K15151
KEGG ReactionR01878,R02485,R08221
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006091,GO:0006790,GO:0008047,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016043,GO:0016226,GO:0022607,GO:0030234,GO:0030544,GO:0031072,GO:0031163,GO:0032781,GO:0042802,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044085,GO:0044093,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0044571,GO:0045333,GO:0050790,GO:0051087,GO:0051186,GO:0051336,GO:0051345,GO:0055114,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0071840,GO:0098772
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG1076@1,KOG3192@2759
Ec32 ortholog descriptionCo-chaperone HscB, C-terminal oligomerisation domain
Ec32 orthologEc-12_002270.1
EC3.5.4.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03029,ko03110
Exons1
Model size285
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.2102218-CDS-H-paniculata_contig8523:247..5321622931070.2102218-CDS-H-paniculata_contig8523:247..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8523 248..532 +
1691481576.2157774-CDS-H-paniculata_contig8523:247..5321691481576.2157774-CDS-H-paniculata_contig8523:247..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8523 248..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8523.16494.1prot_H-paniculata_contig8523.16494.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8523 248..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8523.16494.1

>prot_H-paniculata_contig8523.16494.1 ID=prot_H-paniculata_contig8523.16494.1|Name=mRNA_H-paniculata_contig8523.16494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MRLLGSSALEEESAAEDGPLVPPAFLMKVMESREQLEHCSSTEEAEAILK
QTRAASDQCLKTMDVALKAGGGKDELADAAVRLRYFYRIEDEARD
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mRNA from alignment at H-paniculata_contig8523:248..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8523.16494.1 ID=mRNA_H-paniculata_contig8523.16494.1|Name=mRNA_H-paniculata_contig8523.16494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig8523:248..532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTCTACTCGGATCATCAGCGTTAGAAGAAGAAAGTGCAGCGGAGGA
TGGACCCCTGGTGCCCCCAGCGTTCTTGATGAAGGTCATGGAGAGTAGGG
AGCAATTGGAACACTGTTCAAGCACGGAGGAGGCAGAGGCCATTTTGAAG
CAAACACGGGCAGCTTCAGACCAGTGCTTAAAAACTATGGATGTGGCTTT
GAAGGCAGGGGGTGGGAAGGATGAGCTCGCTGACGCTGCGGTTCGGCTTC
GATACTTCTATCGTATTGAGGACGAGGCTCGAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig8523:248..532+

>mRNA_H-paniculata_contig8523.16494.1 ID=mRNA_H-paniculata_contig8523.16494.1|Name=mRNA_H-paniculata_contig8523.16494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig8523:248..532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTCTACTCGGATCATCAGCGTTAGAAGAAGAAAGTGCAGCGGAGGA
TGGACCCCTGGTGCCCCCAGCGTTCTTGATGAAGGTCATGGAGAGTAGGG
AGCAATTGGAACACTGTTCAAGCACGGAGGAGGCAGAGGCCATTTTGAAG
CAAACACGGGCAGCTTCAGACCAGTGCTTAAAAACTATGGATGTGGCTTT
GAAGGCAGGGGGTGGGAAGGATGAGCTCGCTGACGCTGCGGTTCGGCTTC
GATACTTCTATCGTATTGAGGACGAGGCTCGAGACATGCGTCTACTCGGA
TCATCAGCGTTAGAAGAAGAAAGTGCAGCGGAGGATGGACCCCTGGTGCC
CCCAGCGTTCTTGATGAAGGTCATGGAGAGTAGGGAGCAATTGGAACACT
GTTCAAGCACGGAGGAGGCAGAGGCCATTTTGAAGCAAACACGGGCAGCT
TCAGACCAGTGCTTAAAAACTATGGATGTGGCTTTGAAGGCAGGGGGTGG
GAAGGATGAGCTCGCTGACGCTGCGGTTCGGCTTCGATACTTCTATCGTA
TTGAGGACGAGGCTCGAGAC
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