mRNA_H-paniculata_contig851.16487.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig851.16487.1
Unique NamemRNA_H-paniculata_contig851.16487.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig851.16487.1 vs. uniprot
Match: D8LEQ7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ7_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 4.650e-36
Identity = 66/85 (77.65%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:  460 RGVHPAMLESEFLAATGQTDAQMDGPGASLSLEEVPYDRDLRWCNTASDSRPCPTMDVSGGVFGRVGAPITLDTGDYERLDRHYQ 714
            R VHP MLESEFLAAT Q +  ++G   SLSLEEVPYDRDLRWCNTASDSRP P MD  GGVFGRVG  IT DTGDYERLDRHYQ
Sbjct:  166 RKVHPGMLESEFLAATEQANGGVEGGVVSLSLEEVPYDRDLRWCNTASDSRPRPKMDPQGGVFGRVGTAITHDTGDYERLDRHYQ 250
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BLAST of mRNA_H-paniculata_contig851.16487.1 vs. uniprot
Match: A0A6H5KDB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB0_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.860e-34
Identity = 66/85 (77.65%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:  460 RGVHPAMLESEFLAATGQTDAQMDGPGASLSLEEVPYDRDLRWCNTASDSRPCPTMDVSGGVFGRVGAPITLDTGDYERLDRHYQ 714
            R VHP MLESEFLAAT Q +  ++G   SLSLEEVPYDRDLRWCNTASDSRP P MD  GGVFGRVG  IT DTGDYERLDRHYQ
Sbjct:  169 RKVHPGMLESEFLAATEQANGGVEGGAVSLSLEEVPYDRDLRWCNTASDSRPRPKMDPQGGVFGRVGTAITHDTGDYERLDRHYQ 253
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BLAST of mRNA_H-paniculata_contig851.16487.1 vs. uniprot
Match: A0A6V1NUB3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUB3_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 1.290e-7
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:  529 DGPGASLSLEEVPYDRDLRWCNTASDSRPCPTMDVSGGVFGRVGAPITLDTGDYERLDRHYQ 714
            D P A LSL+EVPYDRDL+WCN AS++RP  T+     +F +V         +Y +LD HY+
Sbjct:   33 DEPVAILSLDEVPYDRDLKWCNQASNARPRRTVGKGHRMFQQVADITEGAVQEYGQLDSHYR 94
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BLAST of mRNA_H-paniculata_contig851.16487.1 vs. uniprot
Match: A0A7S2RK49_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK49_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-6
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:  538 GASLSLEEVPYDRDLRWCNTASDSRPCPTMDVSGGVFGRVGAPITLDTGDYERLDRHYQ 714
            GA LSL++V YDRD+RW N  SD+RP  T+      F ++ + I  DT +Y  LD HY+
Sbjct:   70 GAVLSLDQVSYDRDMRWFNKPSDARPRRTLGKGSRAFNQIES-IANDTREYAALDDHYR 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig851.16487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEQ7_ECTSI4.650e-3677.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDB0_9PHAE1.860e-3477.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1NUB3_HETAK1.290e-746.77Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2RK49_9STRA1.580e-645.76Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig851contigH-paniculata_contig851:28904..31249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_000760.1
Exons3
Model size714
Cds size714
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig851.16487.1prot_H-paniculata_contig851.16487.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig851 28904..31249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.192999-CDS-H-paniculata_contig851:28903..291841622931069.192999-CDS-H-paniculata_contig851:28903..29184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig851 28904..29184 +
1691481575.7896805-CDS-H-paniculata_contig851:28903..291841691481575.7896805-CDS-H-paniculata_contig851:28903..29184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig851 28904..29184 +
1622931069.2082329-CDS-H-paniculata_contig851:29271..295741622931069.2082329-CDS-H-paniculata_contig851:29271..29574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig851 29272..29574 +
1691481575.8003242-CDS-H-paniculata_contig851:29271..295741691481575.8003242-CDS-H-paniculata_contig851:29271..29574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig851 29272..29574 +
1622931069.2284765-CDS-H-paniculata_contig851:31119..312491622931069.2284765-CDS-H-paniculata_contig851:31119..31249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig851 31120..31249 +
1691481575.8079534-CDS-H-paniculata_contig851:31119..312491691481575.8079534-CDS-H-paniculata_contig851:31119..31249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig851 31120..31249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig851.16487.1

>prot_H-paniculata_contig851.16487.1 ID=prot_H-paniculata_contig851.16487.1|Name=mRNA_H-paniculata_contig851.16487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
QASNGTPHSSRRRRRGGGMGGPINSASPARNPGIRSGSIATENSSGGGGG
VGGGRGHSRRTLWEDKDKMGRLQTTSQSSSSANMTLGNNKESSVNSGGND
SSGTTGRNGATGGHGVTGRGSSSSGSGVAGSRRGGGKGRNGSGRGGGSSG
SGGRGVHPAMLESEFLAATGQTDAQMDGPGASLSLEEVPYDRDLRWCNTA
SDSRPCPTMDVSGGVFGRVGAPITLDTGDYERLDRHYQ
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mRNA from alignment at H-paniculata_contig851:28904..31249+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig851.16487.1 ID=mRNA_H-paniculata_contig851.16487.1|Name=mRNA_H-paniculata_contig851.16487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2346bp|location=Sequence derived from alignment at H-paniculata_contig851:28904..31249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGAGCAATGGCACACCCCACTCCAGCCGGAGGCGAAGGCGGGGAGG
GGGGATGGGGGGACCCATAAATAGCGCCTCTCCAGCAAGAAACCCCGGTA
TTCGTAGTGGCAGTATCGCGACCGAAAACTCCAGCGGCGGTGGGGGGGGC
GTTGGAGGTGGGCGTGGCCATAGCCGCCGTACTCTCTGGGAAGACAAGGA
CAAAATGGGGCGACTGCAGACAACGAGCCAATCATCATCATCCGCTAACA
TGACACTTGGCAACAACAAGGAGAGCTCTGTGTTTGCTGCCATCGAGAAT
GACCTGGCCAGTCGCCATCAAAATACCCCACAATCCAGCAAAAATGCCTC
CGTATCCTCCTCCATAAGCAACTCTGGCGGTAACGACAGCAGCGGCACTA
CTGGCAGAAATGGCGCCACAGGCGGGCACGGTGTTACTGGCAGGGGCAGC
AGCAGCAGCGGCAGCGGAGTAGCTGGATCGCGCCGTGGCGGGGGGAAGGG
GAGGAACGGGAGCGGAAGGGGCGGTGGAAGTAGTGGAAGCGGTGGGCGAG
GTGTCCACCCTGCCATGCTTGAAAGCGAGTTTTTGGCGGCGACCGGACAA
ACGGATGCGCAGATGGACGGACCGGGGGCGTCGTTGAGCTTGGAAGAAGT
GCCTTACGATAGAGACCTGAGGTTAGTTGTTGTTCATGAGTGTGTGTGGT
GGGCCATTATAACGGATATGCTGTGCACTACGTGATATATTGTGTTTACA
GTTTACAGTGCGGGCGGTAGGTAGATGGCTAGGTAGAGTAGTAGATGTAA
CGCCTTGTTTTTTCCCTCTGCTTAGTTTTCGTGCGGAAAATAATTTCCAA
TCCCCAACCATTGGAATACAGTAGGCGGGACACTTTGTTCTGTATAAAGA
CTGTACACATGTGACAAATTGAAAACTTGATAATTTGAAGAGAAATAGCG
CTAAGGATCGGAAATGGTTTTTAAAACGAGCGGATCACATATTTTTTGGC
AGAATAGACGTGAGCATCGACACAGAAACGACCCTCTGAGTACAGGTGCA
CTGTATATAGCAATACAGTAATACCCTGATACAGCAGCCAGGATTTGTCT
GCAGGAAACATGCTATGCCTTTCCCCATTTCCACAAAGACCGCATGGCGC
ACGTGGGTCTCGAGGCACAAGTGTCTTTTACCTGCTCTATCAGCGCCAAC
ATTCGAGTGCCGACCTGTCTTATCCCACGACGCTGCCCAAGCCCGGAGGG
AAGCATTCATCCCCCCTCCGACGTTCGGGAGATGGCGTAGTCGATGTGAC
GCGTCACCGACACTCAACAGAAATAGTACACAGTTGCACCGTCGGTAATA
TTTTCTCTTTTCCTGTGATTCGGCATTTGAATCGGCGATGCTTAGTGTCG
GCTGCCTAGACCTTTCCCAACTTACAGTTCCGTTTATATTTTCGGGTGGA
TCCGCCGTTTCTATCACCAGGGCACCGCTTTAGACGCGGGATTGTATGCG
CTCTGCCAGTCCCGTTACGGCGTACATGGCAGGAATACGTGACTTTCCTC
GAGTAGTGGTGCGTCGCCGAAGAGACGGCGATGCTTTCAGAATAACATGT
TGGATGTGTCCGTTGAATATTCTCAGGTAGCGAGCGACTTCATCACTGCT
TCAAAGGTCCAAATCATTAGCCGAATAGTTGATGAAGATCATCCGCGCAA
GTACTAGTAAATCTTTGAAGTGATGGTGTTTTCTTTCTCTCTCTTTCAAG
TGTGCAACCAATAGTTGTAGTGTGTCAGTGGCGAGTGACGCTGATCGCGT
CACACATTCAAATTGTATATGTGTCGAAGAGTTGTAGATAAAAATCTTTT
CACGGATAGTACAGGTGAAACGGTGCTCCACATGAAATGAGGTTTATTGA
TATATTCAGATGGGGCGGTGGGGGGGAGCATGCGCATGTAGTGGTTTGTA
TATCTGTCTGATCCAAAATTATTTTCGATTTCGAATTTTTGCAGGGGAGG
TATGCTCAGCGTCTTCGAGTTGCTGGATTACTTATCCATCAACAAATTAA
ACTATGGGTTGGGCGGTAGGTGCACGTGCCACAGTTAGTAGAGCTATAAC
GCTCGTAAACTCTGTCGTACCCATGTTGAGCTTATGCAGTTGACCTCGTA
CTTGATTTATCATTTGCAAAATTAGATCAATGAGAGGTGTCGTCTTTCCT
CTATTCCGTTTTCAAGGTGGTGCAACACCGCTTCGGACTCTCGACCATGC
CCAACGATGGACGTTTCGGGGGGTGTCTTCGGAAGGGTGGGCGCGCCGAT
AACGCTTGACACCGGTGACTACGAACGCCTGGATCGGCACTATCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig851:28904..31249+

>mRNA_H-paniculata_contig851.16487.1 ID=mRNA_H-paniculata_contig851.16487.1|Name=mRNA_H-paniculata_contig851.16487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig851:28904..31249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGAGCAATGGCACACCCCACTCCAGCCGGAGGCGAAGGCGGGGAGG
GGGGATGGGGGGACCCATAAATAGCGCCTCTCCAGCAAGAAACCCCGGTA
TTCGTAGTGGCAGTATCGCGACCGAAAACTCCAGCGGCGGTGGGGGGGGC
GTTGGAGGTGGGCGTGGCCATAGCCGCCGTACTCTCTGGGAAGACAAGGA
CAAAATGGGGCGACTGCAGACAACGAGCCAATCATCATCATCCGCTAACA
TGACACTTGGCAACAACAAGGAGAGCTCTGTCAGGCGAGCAATGGCACAC
CCCACTCCAGCCGGAGGCGAAGGCGGGGAGGGGGGATGGGGGGACCCATA
AATAGCGCCTCTCCAGCAAGAAACCCCGGTATTCGTAGTGGCAGTATCGC
GACCGAAAACTCCAGCGGCGGTGGGGGGGGCGTTGGAGGTGGGCGTGGCC
ATAGCCGCCGTACTCTCTGGGAAGACAAGGACAAAATGGGGCGACTGCAG
ACAACGAGCCAATCATCATCATCCGCTAACATGACACTTGGCAACAACAA
GGAGAGCTCTGTCAACTCTGGCGGTAACGACAGCAGCGGCACTACTGGCA
GAAATGGCGCCACAGGCGGGCACGGTGTTACTGGCAGGGGCAGCAGCAGC
AGCGGCAGCGGAGTAGCTGGATCGCGCCGTGGCGGGGGGAAGGGGAGGAA
CGGGAGCGGAAGGGGCGGTGGAAGTAGTGGAAGCGGTGGGCGAGGTGTCC
ACCCTGCCATGCTTGAAAGCGAGTTTTTGGCGGCGACCGGACAAACGGAT
GCGCAGATGGACGGACCGGGGGCGTCGTTGAGCTTGGAAGAAGTGCCTTA
CGATAGAGACCTGAGCAACTCTGGCGGTAACGACAGCAGCGGCACTACTG
GCAGAAATGGCGCCACAGGCGGGCACGGTGTTACTGGCAGGGGCAGCAGC
AGCAGCGGCAGCGGAGTAGCTGGATCGCGCCGTGGCGGGGGGAAGGGGAG
GAACGGGAGCGGAAGGGGCGGTGGAAGTAGTGGAAGCGGTGGGCGAGGTG
TCCACCCTGCCATGCTTGAAAGCGAGTTTTTGGCGGCGACCGGACAAACG
GATGCGCAGATGGACGGACCGGGGGCGTCGTTGAGCTTGGAAGAAGTGCC
TTACGATAGAGACCTGAGGTGGTGCAACACCGCTTCGGACTCTCGACCAT
GCCCAACGATGGACGTTTCGGGGGGTGTCTTCGGAAGGGTGGGCGCGCCG
ATAACGCTTGACACCGGTGACTACGAACGCCTGGATCGGCACTATCAGGT
GGTGCAACACCGCTTCGGACTCTCGACCATGCCCAACGATGGACGTTTCG
GGGGGTGTCTTCGGAAGGGTGGGCGCGCCGATAACGCTTGACACCGGTGA
CTACGAACGCCTGGATCGGCACTATCAG
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