mRNA_H-paniculata_contig849.16472.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig849.16472.1
Unique NamemRNA_H-paniculata_contig849.16472.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5L1A8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.710e-11
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKLMEW 285
            T+ AAGQ +K+T+ F YLG TI + G    EI  R   A  C+++    +Y+        KIR+ +A  +  LLYG + W+L   H  KL +W
Sbjct:  105 TVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNQW 197
[Close]
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5K1C5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.550e-11
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKL 276
            T+ AAGQ +K+T+ F YLG TI + G    EI  R   A  C+++    +Y+        KIR+ +A  +  LLYG + W L   HD KL
Sbjct:   37 TVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWRLTAEHDTKL 126
[Close]
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5LP35_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LP35_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.790e-11
Identity = 33/90 (36.67%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKL 276
            T+ AAGQ +K+T+ F YLG TI + G    EI  R   A  C+++    +Y+        KIR+  A  +  LLYG + W+L   H  KL
Sbjct:   23 TVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDMRRANRQLKIRLLMAEVVETLLYGCASWSLTAEHYTKL 112
[Close]
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.950e-11
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKLME 282
            T+ AAGQ +K+T+ F YLG TI + G    EI  R   A  C+++    +Y+        KIR+ +A  +  LLYG + W+L   H AKL E
Sbjct:  401 TVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNE 492
[Close]
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.190e-11
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKL 276
            T+ AAGQ +K+T+ F YLG  I + G    EI  R   A  CF++    +Y+ P      KIR+ +A  +  LLYG + W+L   H  KL
Sbjct:  107 TVSAAGQSYKQTDRFVYLGRAISADGKADREITSRSCRAWKCFRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKL 196
[Close]
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5KQQ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.220e-11
Identity = 33/90 (36.67%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKL 276
            T+ AAGQ +K+T+ F YLG TI + G    EI  R   A  C+++    +Y+        KIR+ +A  +  LLYG + W+L   H  KL
Sbjct:   22 TVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVEALLYGCASWSLTAEHYTKL 111
[Close]
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5L7Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.350e-10
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKLM 279
            T+ AAGQ +K+T+ F YLG TI + G    EI  R   A  C+++    +Y+   +    KIR+ +A  +  LLYG + W+L   H  KL+
Sbjct:   27 TVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRKSASMYDRRRVDRKLKIRLLQAEVVETLLYGCASWSLTAEHYTKLI 117
[Close]
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5JKH3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.680e-10
Identity = 33/90 (36.67%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKL 276
            T+ AAGQ +K+T+ F YLG TI + G    EI  R   A  C+++    +Y+        KIR+ +A  +  LLYG + W+L   H  KL
Sbjct:   56 TVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKL 145
[Close]
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.070e-10
Identity = 33/90 (36.67%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKL 276
            T+ AAGQ +K+T+ F YLG TI + G    EI  R   A  C+++    +Y+        KIR+ +A  +  LLYG + W+L   H  KL
Sbjct:  394 TVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSYRAWKCYRRNSASMYDRRRANCQVKIRLLQAEVVETLLYGCASWSLTAEHYTKL 483
[Close]
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Match: A0A6H5JR12_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR12_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.780e-10
Identity = 33/90 (36.67%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    7 TIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQRQVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKL 276
            T+ AAGQ +K+T+ F YLG TI + G    EI  R   A  C+++    +Y+        KIR+ +A  +  LLYG + W+L   H  KL
Sbjct:  259 TVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKL 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig849.16472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1A8_9PHAE2.710e-1136.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1C5_9PHAE3.550e-1137.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LP35_9PHAE3.790e-1136.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZD4_9PHAE5.950e-1138.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5J5_9PHAE7.190e-1137.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQQ1_9PHAE7.220e-1136.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7Y9_9PHAE1.350e-1036.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKH3_9PHAE1.680e-1036.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KL25_9PHAE2.070e-1036.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR12_9PHAE2.780e-1036.67Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig849contigH-paniculata_contig849:29706..30005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.7067485-CDS-H-paniculata_contig849:29705..300051622931065.7067485-CDS-H-paniculata_contig849:29705..30005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig849 29706..30005 +
1691481574.1576002-CDS-H-paniculata_contig849:29705..300051691481574.1576002-CDS-H-paniculata_contig849:29705..30005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig849 29706..30005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig849.16472.1prot_H-paniculata_contig849.16472.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig849 29706..30005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig849.16472.1

>prot_H-paniculata_contig849.16472.1 ID=prot_H-paniculata_contig849.16472.1|Name=mRNA_H-paniculata_contig849.16472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
VLTIEAAGQRFKKTETFTYLGGTIHSTGDTMVEIMRRGGLAHLCFKKYQR
QVYECPNMRIDAKIRVFKANFLGVLLYGYSMWTLLDLHDAKLMEWRFWD*
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mRNA from alignment at H-paniculata_contig849:29706..30005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig849.16472.1 ID=mRNA_H-paniculata_contig849.16472.1|Name=mRNA_H-paniculata_contig849.16472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig849:29706..30005+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTCACCATCGAAGCAGCAGGTCAGAGATTCAAGAAAACTGAAACGTT
CACCTACCTAGGGGGTACCATACACAGCACCGGCGACACGATGGTAGAGA
TCATGAGACGAGGTGGCCTGGCCCACCTGTGCTTCAAGAAGTACCAACGG
CAAGTTTACGAATGCCCGAACATGCGAATTGACGCCAAGATTCGCGTATT
CAAGGCAAATTTTCTCGGGGTTCTGCTGTACGGCTACTCCATGTGGACAC
TCCTCGACTTGCACGACGCTAAGCTGATGGAGTGGCGCTTCTGGGATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig849:29706..30005+

>mRNA_H-paniculata_contig849.16472.1 ID=mRNA_H-paniculata_contig849.16472.1|Name=mRNA_H-paniculata_contig849.16472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig849:29706..30005+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTCACCATCGAAGCAGCAGGTCAGAGATTCAAGAAAACTGAAACGTT
CACCTACCTAGGGGGTACCATACACAGCACCGGCGACACGATGGTAGAGA
TCATGAGACGAGGTGGCCTGGCCCACCTGTGCTTCAAGAAGTACCAACGG
CAAGTTTACGAATGCCCGAACATGCGAATTGACGCCAAGATTCGCGTATT
CAAGGCAAATTTTCTCGGGGTTCTGCTGTACGGCTACTCCATGTGGACAC
TCCTCGACTTGCACGACGCTAAGCTGATGGAGTGGCGCTTCTGGGATTGA
GTCCTCACCATCGAAGCAGCAGGTCAGAGATTCAAGAAAACTGAAACGTT
CACCTACCTAGGGGGTACCATACACAGCACCGGCGACACGATGGTAGAGA
TCATGAGACGAGGTGGCCTGGCCCACCTGTGCTTCAAGAAGTACCAACGG
CAAGTTTACGAATGCCCGAACATGCGAATTGACGCCAAGATTCGCGTATT
CAAGGCAAATTTTCTCGGGGTTCTGCTGTACGGCTACTCCATGTGGACAC
TCCTCGACTTGCACGACGCTAAGCTGATGGAGTGGCGCTTCTGGGATTGA
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