mRNA_H-paniculata_contig8417.16423.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8417.16423.1
Unique NamemRNA_H-paniculata_contig8417.16423.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8417.16423.1 vs. uniprot
Match: D7FLX3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX3_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.060e-10
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   34 EAEPMHRRALEIAQKTVGSGHPAAASSLHGLGVLAQARG 150
            EAEP+H+RAL+IA+ T G GHP AA SLHGL VLAQARG
Sbjct:    2 EAEPLHKRALDIARSTTGPGHPTAAYSLHGLAVLAQARG 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8417.16423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLX3_ECTSI2.060e-1074.36TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8417contigH-paniculata_contig8417:4816..4974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog2880.D7FLX3
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Ec32 ortholog descriptionKinesin light chain
Ec32 orthologEc-00_002720.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.5340252-CDS-H-paniculata_contig8417:4815..49741622931057.5340252-CDS-H-paniculata_contig8417:4815..4974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8417 4816..4974 -
1691481570.457172-CDS-H-paniculata_contig8417:4815..49741691481570.457172-CDS-H-paniculata_contig8417:4815..4974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8417 4816..4974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8417.16423.1prot_H-paniculata_contig8417.16423.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8417 4816..4974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8417.16423.1

>prot_H-paniculata_contig8417.16423.1 ID=prot_H-paniculata_contig8417.16423.1|Name=mRNA_H-paniculata_contig8417.16423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MVYPCVQGRLEEAEPMHRRALEIAQKTVGSGHPAAASSLHGLGVLAQARG
DHV
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mRNA from alignment at H-paniculata_contig8417:4816..4974-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8417.16423.1 ID=mRNA_H-paniculata_contig8417.16423.1|Name=mRNA_H-paniculata_contig8417.16423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig8417:4816..4974- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTACCCTTGTGTGCAGGGGAGGCTGGAGGAAGCGGAACCCATGCA
CCGGAGGGCTTTGGAGATCGCTCAGAAGACAGTGGGGTCCGGCCATCCAG
CAGCGGCGTCGTCACTGCATGGACTGGGAGTGTTGGCACAGGCTCGAGGT
GACCATGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig8417:4816..4974-

>mRNA_H-paniculata_contig8417.16423.1 ID=mRNA_H-paniculata_contig8417.16423.1|Name=mRNA_H-paniculata_contig8417.16423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig8417:4816..4974- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTACCCTTGTGTGCAGGGGAGGCTGGAGGAAGCGGAACCCATGCA
CCGGAGGGCTTTGGAGATCGCTCAGAAGACAGTGGGGTCCGGCCATCCAG
CAGCGGCGTCGTCACTGCATGGACTGGGAGTGTTGGCACAGGCTCGAGGT
GACCATGTCATGGTGTACCCTTGTGTGCAGGGGAGGCTGGAGGAAGCGGA
ACCCATGCACCGGAGGGCTTTGGAGATCGCTCAGAAGACAGTGGGGTCCG
GCCATCCAGCAGCGGCGTCGTCACTGCATGGACTGGGAGTGTTGGCACAG
GCTCGAGGTGACCATGTC
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