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Homology
BLAST of mRNA_H-paniculata_contig8407.16415.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI) HSP 1 Score: 101 bits (251), Expect = 6.450e-20 Identity = 75/233 (32.19%), Postives = 104/233 (44.64%), Query Frame = 1
Query: 280 RNLRLSTAKDVKDVVESQKTMLETVVIIGDQVQEMRRLEPHQSSQLRGLARELAGLTVRIPSYAVLLPPRRDESQVLTEDERGEPNWIERLKTW-------------------YGKDKKAGKGMATKEFRLFFLCGHDRSLAECGLDGKGYRIATHRKWVTKCLPFAKALLVVVNIALRSLAGLSIPIEGISGVGGQSLDEVLASMVEDTEEVLTDNACSAGVQRLDEAHATG 921
R L +T K V V + + L + G L P + L G+ARE+A L IP + +LP R L+E +R W LK W G +K +G+ T+E RLFFLCG D+SLAECG DG+GY + WV K P AK L + +IAL+ GL++ + G S D +++ VED + S RLD +G
Sbjct: 839 RKLNETTMKVVAGVEQVVQANLSNAAVAG--------LRPTERDILVGVAREVAILRWPIPRFVCVLPARDTR---LSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFGTSED--MSAFVEDALSAGIEGTTSKAGNRLDRLQNSG 1058
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 103.2 |
| Seed ortholog evalue | 2.3e-19 |
| Seed eggNOG ortholog | 2880.D7FU35 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | regulation of response to stimulus |
| EggNOG OGs | COG4886@1,KOG0619@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 980 |
| Cds size | 978 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8407.16415.1 >prot_H-paniculata_contig8407.16415.1 ID=prot_H-paniculata_contig8407.16415.1|Name=mRNA_H-paniculata_contig8407.16415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=326bp
AGILASELLEVDDINAPVGEVFQRVVGRVSESQRARLSSCGNANSTNSRG
AAHSRANNDDILEKILEQLKEILHRVQPCSFIIDEVKNVTANLRNLRLST
AKDVKDVVESQKTMLETVVIIGDQVQEMRRLEPHQSSQLRGLARELAGLT
VRIPSYAVLLPPRRDESQVLTEDERGEPNWIERLKTWYGKDKKAGKGMAT
KEFRLFFLCGHDRSLAECGLDGKGYRIATHRKWVTKCLPFAKALLVVVNI
ALRSLAGLSIPIEGISGVGGQSLDEVLASMVEDTEEVLTDNACSAGVQRL
DEAHATGENLEQSTLADGSEGVDNSN back to topmRNA from alignment at H-paniculata_contig8407:191..2059- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8407.16415.1 ID=mRNA_H-paniculata_contig8407.16415.1|Name=mRNA_H-paniculata_contig8407.16415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1869bp|location=Sequence derived from alignment at H-paniculata_contig8407:191..2059- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGGATTCTTGCATCGGAGCTGCTTGAGGTGGACGACATCAATGCCCC
TGTAGGTAACACGGTCTGTTCCAGCCAAAATCACAACTAGGCGGAGCGAT
AGCCAGCATGAGAGGGTTGACTACGTTTTCATGTTGTTCTGCCGGACGAT
CGACACGCTACCCAACGACAATGCGTGTTTCGCTACCGGAGCGGGCAGGG
GGCTGTTGCATGACATACATACTGCAGTTTCCCCGGCTTTTAGCCCAGTC
AGTTGCTCTCTGATGAGCAGCATGATGGCGCACACTACATATGCTGTAGG
ACATGTTTTCTTCGCCAGGCGGGTCGTTCAGGTACCCGATTGACGAGATT
CCTCTCAATGCAACACCAGCGAATAATCACTACGTCAATTGGAAATCGCC
ATCCTTCACAGTACTTTGGCGCCCGTACCTTTCAGTCAACGCGGACACAT
GTCACGGGTCTCCTCCCATTTCGCGCGTCCAGGTGAAGTATTTCAGCGAG
TGGTGGGCCGTGTCTCCGAGTCGCAGAGAGCCAGGCTGAGTAGCTGCGGG
AATGCCAACAGCACAAATTCTCGTGGGGCGGTGAGGAGGTTTCGTACCCA
GCTTCTTGAATATGCGTATTTGATATGCTTCTTAGAATGCGGCTGCGAAA
ACACGGCGAAACTAACTCAAAAACGTTGCTATGGTTATTTATACCTTGCC
CGTAGTGAACAGAGATGCGCACATCGCCTCGGCTAGAATCATCATTCGCC
ATAGTGGTACGGAGAGGGATTGTTGAACTCTCTTTCCAGCCTCCTTCGTA
ACTTTAAAACAAGCGGGGCACGTTTACCTAATGCAGGGGATACGAATGTG
GTTGATTCAATTGCTATGCACTCCACCACAATGTTGAACATTTCAGGAGA
TTGGACACGCGCGGTGTGCCCGCTCTGCATGGTTGAAACAACTCCTGAAA
GAACAATTGTCCGGTTTCGTTGCTTGACTTCGTCGTTCACCCGTCAAATC
GTCCTTACTGCCGTCAGCATTCTCTCCTTCCTGATTATGACAGGCCCACA
GTCGTGCGAATAATGATGACATCTTGGAGAAAATCTTGGAGCAGCTGAAA
GAAATCTTGCACAGAGTCCAACCTTGCAGCTTCATCATCGACGAAGTCAA
GAACGTGACTGCTAACTTGCGCAACCTCCGCTTGTCTACGGCGAAGGATG
TCAAGGACGTGGTAGAGTCCCAAAAGACTATGTTGGAGACTGTGGTGATT
ATAGGAGATCAGGTGCAGGAGATGAGACGTTTGGAACCGCATCAGTCTTC
CCAGCTGCGAGGCCTTGCGAGGGAACTAGCCGGCCTGACTGTTCGCATCC
CAAGCTATGCGGTGCTCTTACCTCCGCGGCGAGACGAGTCTCAAGTGCTG
ACAGAGGATGAAAGAGGGGAACCAAACTGGATCGAGAGGTTGAAGACGTG
GTATGGTAAGGACAAGAAGGCCGGGAAAGGCATGGCAACGAAGGAGTTTA
GACTGTTCTTTCTCTGCGGACACGACCGCAGCCTTGCGGAATGTGGGCTT
GATGGAAAGGGGTACCGCATAGCGACTCACCGAAAGTGGGTGACAAAATG
TCTCCCGTTCGCTAAGGCCCTACTGGTCGTCGTAAATATCGCGCTGAGGA
GCTTGGCAGGGTTGAGCATTCCCATTGAAGGAATCTCAGGTGTAGGTGGG
CAATCGTTGGACGAGGTCCTCGCATCGATGGTGGAGGATACGGAAGAGGT
ACTGACAGACAATGCTTGCTCTGCTGGAGTACAGAGGCTCGATGAAGCAC
ATGCGACCGGGGAAAATCTGGAACAGAGTACCCTCGCGGACGGCTCTGAA
GGCGTGGACAATTCGAATG back to topCoding sequence (CDS) from alignment at H-paniculata_contig8407:191..2059- >mRNA_H-paniculata_contig8407.16415.1 ID=mRNA_H-paniculata_contig8407.16415.1|Name=mRNA_H-paniculata_contig8407.16415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1956bp|location=Sequence derived from alignment at H-paniculata_contig8407:191..2059- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGGGATTCTTGCATCGGAGCTGCTTGAGGTGGACGACATCAATGCCCC
TGTAGGCTGGGATTCTTGCATCGGAGCTGCTTGAGGTGGACGACATCAAT
GCCCCTGTAGGTGAAGTATTTCAGCGAGTGGTGGGCCGTGTCTCCGAGTC
GCAGAGAGCCAGGCTGAGTAGCTGCGGGAATGCCAACAGCACAAATTCTC
GTGGGGCGGTGAAGTATTTCAGCGAGTGGTGGGCCGTGTCTCCGAGTCGC
AGAGAGCCAGGCTGAGTAGCTGCGGGAATGCCAACAGCACAAATTCTCGT
GGGGCGGCCCACAGTCGTGCGAATAATGATGACATCTTGGAGAAAATCTT
GGAGCAGCTGAAAGAAATCTTGCACAGAGTCCAACCTTGCAGCTTCATCA
TCGACGAAGTCAAGAACGTGACTGCTAACTTGCGCAACCTCCGCTTGTCT
ACGGCGAAGGATGTCAAGGACGTGGTAGAGTCCCAAAAGACTATGTTGGA
GACTGTGGTGATTATAGGAGATCAGGTGCAGGAGATGAGACGTTTGGAAC
CGCATCAGTCTTCCCAGCTGCGAGGCCTTGCGAGGGAACTAGCCGGCCTG
ACTGTTCGCATCCCAAGCTATGCGGTGCTCTTACCTCCGCGGCGAGACGA
GTCTCAAGTGCTGACAGAGGATGAAAGAGGGGAACCAAACTGGATCGAGA
GGTTGAAGACGTGGTATGGTAAGGACAAGAAGGCCGGGAAAGGCATGGCA
ACGAAGGAGTTTAGACTGTTCTTTCTCTGCGGACACGACCGCAGCCTTGC
GGAATGTGGGCTTGATGGAAAGGGGTACCGCATAGCGACTCACCGAAAGT
GGGTGACAAAATGTCTCCCGTTCGCTAAGGCCCTACTGGTCGTCGTAAAT
ATCGCGCTGAGGAGCTTGGCAGGGTTGAGCATTCCCATTGAAGGAATCTC
AGGTGTAGGTGGGCAATCGTTGGACGAGGTCCTCGCATCGATGGTGGAGG
ATACGGAAGAGGTACTGACAGACAATGCTTGCTCTGCTGGAGTACAGAGG
CTCGATGAAGCACATGCGACCGGGGAAAATCTGGAACAGAGTACCCTCGC
GGACGGCTCTGAAGGCGTGGACAATTCGAATGCCCACAGTCGTGCGAATA
ATGATGACATCTTGGAGAAAATCTTGGAGCAGCTGAAAGAAATCTTGCAC
AGAGTCCAACCTTGCAGCTTCATCATCGACGAAGTCAAGAACGTGACTGC
TAACTTGCGCAACCTCCGCTTGTCTACGGCGAAGGATGTCAAGGACGTGG
TAGAGTCCCAAAAGACTATGTTGGAGACTGTGGTGATTATAGGAGATCAG
GTGCAGGAGATGAGACGTTTGGAACCGCATCAGTCTTCCCAGCTGCGAGG
CCTTGCGAGGGAACTAGCCGGCCTGACTGTTCGCATCCCAAGCTATGCGG
TGCTCTTACCTCCGCGGCGAGACGAGTCTCAAGTGCTGACAGAGGATGAA
AGAGGGGAACCAAACTGGATCGAGAGGTTGAAGACGTGGTATGGTAAGGA
CAAGAAGGCCGGGAAAGGCATGGCAACGAAGGAGTTTAGACTGTTCTTTC
TCTGCGGACACGACCGCAGCCTTGCGGAATGTGGGCTTGATGGAAAGGGG
TACCGCATAGCGACTCACCGAAAGTGGGTGACAAAATGTCTCCCGTTCGC
TAAGGCCCTACTGGTCGTCGTAAATATCGCGCTGAGGAGCTTGGCAGGGT
TGAGCATTCCCATTGAAGGAATCTCAGGTGTAGGTGGGCAATCGTTGGAC
GAGGTCCTCGCATCGATGGTGGAGGATACGGAAGAGGTACTGACAGACAA
TGCTTGCTCTGCTGGAGTACAGAGGCTCGATGAAGCACATGCGACCGGGG
AAAATCTGGAACAGAGTACCCTCGCGGACGGCTCTGAAGGCGTGGACAAT
TCGAAT back to top
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