mRNA_H-paniculata_contig8396.16402.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: D7G5V8_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5V8_ECTSI) HSP 1 Score: 280 bits (717), Expect = 1.450e-92 Identity = 161/212 (75.94%), Postives = 173/212 (81.60%), Query Frame = 1
Query: 1 MKTVFPWLLIACAVKSASAFAPIAQQTLRPTPRPHGWRKAVSMPSDPQXXXXXXXXXXXXXRRTPVPMPTVGEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQVTHPKLWSNRLRN 636
MK ++L AC ASAF P + R + + A SMP++PQ XXXXXX RRTPVPMPTVGEG +QMDV+SRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGS+GKRKSLPNSRIMIHQPLGGAAGQAADIEIQ L++ RL N
Sbjct: 1 MKRTLFYMLGACIGSHASAFVPAVPLSRRAIVQQRCLQHAQSMPTEPQPEXXXXXXVPP--RRTPVPMPTVGEGSEQMDVMSRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSAGKRKSLPNSRIMIHQPLGGAAGQAADIEIQAKEI-LFTKRLLN 209
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: A0A836C9E3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E3_9STRA) HSP 1 Score: 253 bits (646), Expect = 1.990e-82 Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 1
Query: 184 RRTPVPMPTVGEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQ 597
RRTPV MPTVGEG+DQMDV+SRLLKDRILLLG EVNDEVGNV+VAQLLYLA DPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAG+ GKRKSLPN+RIMIHQPLGGA GQAADIEIQ
Sbjct: 15 RRTPVNMPTVGEGKDQMDVVSRLLKDRILLLGSEVNDEVGNVMVAQLLYLAQSDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGAQGKRKSLPNARIMIHQPLGGAQGQAADIEIQ 152
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: A0A7S2SET8_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SET8_9STRA) HSP 1 Score: 238 bits (608), Expect = 2.410e-76 Identity = 122/147 (82.99%), Postives = 132/147 (89.80%), Query Frame = 1
Query: 196 VPMPTVGEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQVTHPKLWSNRLRN 636
VP+P+VGEG+DQ DV+SRLLKDRILLLG EVNDEV NVLVAQLLYLAN+DP K+ITLYINSPGGSVSAGLAIYDTMQFIPCDV TVCFGMAASMGAFLLGAG+ GKR SLPN+RIMIHQPLGGAAGQAADIEIQ L++ L N
Sbjct: 54 VPLPSVGEGKDQKDVLSRLLKDRILLLGSEVNDEVANVLVAQLLYLANEDPYKEITLYINSPGGSVSAGLAIYDTMQFIPCDVRTVCFGMAASMGAFLLGAGAQGKRASLPNARIMIHQPLGGAAGQAADIEIQAKEI-LYTKELLN 199
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: D8LGQ4_ECTSI (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ4_ECTSI) HSP 1 Score: 234 bits (596), Expect = 8.020e-74 Identity = 128/195 (65.64%), Postives = 144/195 (73.85%), Query Frame = 1
Query: 37 AVKSASAFAPIAQQT----LRPTPRPHGWRK-AVSM---PSDPQXXXXXXXXXXXXXRRTPVPMPTVGEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQ 597
A++ S+ A+ T ++ P P W +VSM P DP PV MP V G QMDVISRLLKDRILLLGQ+VNDEV NVLVAQLLYLANDDP+KDITLYINSPGGSVSAG+AIYD MQ++PCDV+TVCFG AASMGAFLLGAG+ GKR+SLPN+RIMIHQPLGGA GQAADIEIQ
Sbjct: 28 ALRQRSSHGAAARATSALSMKAGPNPKTWYPHSVSMMPSPDDPPEVDPRRKDPDRPAEAPPVRMPVVDVGGSQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANDDPDKDITLYINSPGGSVSAGMAIYDAMQYVPCDVSTVCFGTAASMGAFLLGAGAKGKRRSLPNARIMIHQPLGGAQGQAADIEIQ 222
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: A0A8J2T3N8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T3N8_9STRA) HSP 1 Score: 232 bits (592), Expect = 1.390e-73 Identity = 118/136 (86.76%), Postives = 127/136 (93.38%), Query Frame = 1
Query: 193 PVPMPTV-GEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQ 597
PV MPTV G +Q+DV+SRLLKDRILLLG EVNDEVGNVLVAQ+LYLAN+DPE DITLYINSPGGSVSAG+AIYDTMQFIPCDV+TVCFGMAASMGAFLLGAG+ GKRKSLPN+RIMIHQPLGGA GQAADIEIQ
Sbjct: 63 PVIMPTVTGSNGEQIDVVSRLLKDRILLLGSEVNDEVGNVLVAQMLYLANEDPEADITLYINSPGGSVSAGMAIYDTMQFIPCDVSTVCFGMAASMGAFLLGAGAKGKRKSLPNARIMIHQPLGGAQGQAADIEIQ 198
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: A0A7S2JVK3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVK3_9STRA) HSP 1 Score: 231 bits (588), Expect = 4.490e-73 Identity = 117/133 (87.97%), Postives = 123/133 (92.48%), Query Frame = 1
Query: 199 PMPTVGEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQ 597
P+PTV Q+DVISRLLKDRILLLG +VNDEV NVLVAQLLYLAN+DPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDV TVCFGMAASMGAFLLGAG+ GKRKSLPN+RIMIHQPLGGA GQAADIEIQ
Sbjct: 58 PLPTVDGQSGQLDVISRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGAKGKRKSLPNARIMIHQPLGGAQGQAADIEIQ 190
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: A0A7S4EKY3_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A7S4EKY3_9STRA) HSP 1 Score: 230 bits (586), Expect = 1.280e-72 Identity = 128/196 (65.31%), Postives = 142/196 (72.45%), Query Frame = 1
Query: 31 ACAVKSASAFAPIAQQT------LRPTPRPHGWRKAVSMPSDPQXXXXXXXXXXXXXR-RTPVPMPTVGEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQ 597
A AV FAPI T +R +P W V MP +P PV MP + QMDV+SRLLKDRILLLGQ V+DEV NVLVAQLLYLAN+DPEKDITLYINSPGGSVSAG+AIYDTMQ++PCDV+TVCFGMAASMGAFLLGAG+ GKR++LPNSRIMIHQPLGGA GQAADIEIQ
Sbjct: 11 ATAVAFCEGFAPITSSTRQSSTAVRISPAMGPW---VMMPDEPAPEVDPRRRDPDDQPPANPVRMPVIDTDAGQMDVLSRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPEKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQ 203
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: A0A1Z5K1J4_FISSO (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1J4_FISSO) HSP 1 Score: 229 bits (585), Expect = 1.360e-72 Identity = 127/196 (64.80%), Postives = 147/196 (75.00%), Query Frame = 1
Query: 13 FPWLLIACAVKSASAFAPIAQQTLRPTPRPHGWRKAVSMPSDPQXXXXXXXXXXXXXRRT-PVPMPTVGEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQ 597
F LL+ A + SA++P Q ++ + W MP +PQ T PV MP + + QMDVISRLLKDRILLLGQ V+DEV NVLVAQLLYLAN+DP+KDITLYINSPGGSVSAG+AIYDTMQ++PCDV+TVCFGMAASMGAFLLGAG+ GKR++LPNSRIMIHQPLGGA GQAADIEIQ
Sbjct: 4 FATLLLPIATSAFSAYSP--QSSIVNSMISSKW---TMMPDEPQPEVDPRRKDPDDKPPTNPVRMPMIDTEKGQMDVISRLLKDRILLLGQGVDDEVANVLVAQLLYLANEDPKKDITLYINSPGGSVSAGMAIYDTMQYVPCDVSTVCFGMAASMGAFLLGAGAKGKRRALPNSRIMIHQPLGGAQGQAADIEIQ 194
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: A0A7S1E2R9_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2R9_9STRA) HSP 1 Score: 228 bits (582), Expect = 2.050e-72 Identity = 116/135 (85.93%), Postives = 123/135 (91.11%), Query Frame = 1
Query: 193 PVPMPTVGEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQ 597
P P+PTV Q+DVISRLLKDRILLLG +VNDEV NVLVAQLLYLAN+DP+KDITLYINSPGGSVSAGLAIYDTMQFIPCDV TVCFGMAASMGAFLLGAG+ GKRKSLPN+RIMIHQPLGGA G AADIEIQ
Sbjct: 39 PPPLPTVDGQSGQLDVISRLLKDRILLLGTDVNDEVANVLVAQLLYLANEDPDKDITLYINSPGGSVSAGLAIYDTMQFIPCDVQTVCFGMAASMGAFLLGAGARGKRKSLPNARIMIHQPLGGAQGAAADIEIQ 173
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Match: A0A7S3NLA1_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLA1_9STRA) HSP 1 Score: 229 bits (584), Expect = 2.190e-72 Identity = 117/161 (72.67%), Postives = 130/161 (80.75%), Query Frame = 1
Query: 115 KAVSMPSDPQXXXXXXXXXXXXXRRTPVPMPTVGEGRDQMDVISRLLKDRILLLGQEVNDEVGNVLVAQLLYLANDDPEKDITLYINSPGGSVSAGLAIYDTMQFIPCDVATVCFGMAASMGAFLLGAGSSGKRKSLPNSRIMIHQPLGGAAGQAADIEIQ 597
+ + M S+P+ PV MP V G QMDVISRLLKDRILLLGQ+VNDEV NVLVAQLLYLAN+DP KDITLY+NSPGGSVSAG+AIYD MQF+PCDVATVCFG AASMGAFLLGAG+ GKR++LPN+RIMIHQPLGGA GQAADIEIQ
Sbjct: 36 RRIKMMSEPEPEVDPRRRDPDTKPVPPVRMPVVDSGDGQMDVISRLLKDRILLLGQQVNDEVANVLVAQLLYLANEDPTKDITLYVNSPGGSVSAGMAIYDAMQFVPCDVATVCFGTAASMGAFLLGAGARGKRRALPNARIMIHQPLGGAQGQAADIEIQ 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8396.16402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8396.16402.1 >prot_H-paniculata_contig8396.16402.1 ID=prot_H-paniculata_contig8396.16402.1|Name=mRNA_H-paniculata_contig8396.16402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp MKTVFPWLLIACAVKSASAFAPIAQQTLRPTPRPHGWRKAVSMPSDPQPEback to top mRNA from alignment at H-paniculata_contig8396:8939..9704- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8396.16402.1 ID=mRNA_H-paniculata_contig8396.16402.1|Name=mRNA_H-paniculata_contig8396.16402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=766bp|location=Sequence derived from alignment at H-paniculata_contig8396:8939..9704- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8396:8939..9704- >mRNA_H-paniculata_contig8396.16402.1 ID=mRNA_H-paniculata_contig8396.16402.1|Name=mRNA_H-paniculata_contig8396.16402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig8396:8939..9704- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |