mRNA_H-paniculata_contig8372.16387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8372.16387.1
Unique NamemRNA_H-paniculata_contig8372.16387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8372.16387.1 vs. uniprot
Match: D7FS65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS65_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 6.070e-77
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 1 
Query:  277 PARFVLCGDDTGRGIDYGIMNKGSWKTLEQYCEKWGIKQAHLDSIYARFERTIIRTEHLDFTSKPQFHASLDFLADQFMATSGEFAAQLFIQTWFLRHERGLLPPKDRRCVDFARLVIMCCDLARMGDYELLATLWGCVLHR 702
            P +FVL GDDTG GI+Y I++  SW+ LE YC+KWGIKQAHL+SIY+RF RTIIRTEHLDFT KPQ+HASLDFLAD+FM T+GEFAAQ+FIQTWFLR +RGL PP+DRRCVDF RLVIMC DLAR+GDYELL  LW CVLHR
Sbjct:   35 PQKFVLAGDDTGSGIEYNILDPESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELLINLWACVLHR 176
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BLAST of mRNA_H-paniculata_contig8372.16387.1 vs. uniprot
Match: A0A836C822_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C822_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.320e-28
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 1 
Query:  331 IMNKGSWKTLEQYCEKWGIKQAHLDSIYARFERTIIRTEHLDFTSKPQFHASLDFLADQFMATSGEFAAQLFIQTWFLRHERGLLPPKDRRCVDFARLVIMCCDLARMGDYELLATLWGCVLH 699
            +++   W+ L +YC + G  +  +++I+ARF RT+   EH DFT K   HASLDF+ D+F  T GEF AQL +QTW+ +    L P  DRR  DFARLVI+ CDLA M + ELL   W   L 
Sbjct:    1 MLDDDQWQLLAEYCNERGFGKREVEAIHARFARTLNSEEHSDFTKKKIHHASLDFIQDEFYNTGGEFVAQLLLQTWYQQPHAMLAPQSDRRQFDFARLVILSCDLADMSNAELLTAFWASALQ 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8372.16387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS65_ECTSI6.070e-7776.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C822_9STRA2.320e-2846.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8372contigH-paniculata_contig8372:344..2600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_000720.1
Exons4
Model size710
Cds size708
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8372.16387.1prot_H-paniculata_contig8372.16387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8372 344..2600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.803006-CDS-H-paniculata_contig8372:343..5501622931052.803006-CDS-H-paniculata_contig8372:343..550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8372 344..550 -
1691481568.244054-CDS-H-paniculata_contig8372:343..5501691481568.244054-CDS-H-paniculata_contig8372:343..550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8372 344..550 -
1622931052.8180025-CDS-H-paniculata_contig8372:1086..12121622931052.8180025-CDS-H-paniculata_contig8372:1086..1212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8372 1087..1212 -
1691481568.2556868-CDS-H-paniculata_contig8372:1086..12121691481568.2556868-CDS-H-paniculata_contig8372:1086..1212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8372 1087..1212 -
1622931052.834664-CDS-H-paniculata_contig8372:1771..20641622931052.834664-CDS-H-paniculata_contig8372:1771..2064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8372 1772..2064 -
1691481568.272261-CDS-H-paniculata_contig8372:1771..20641691481568.272261-CDS-H-paniculata_contig8372:1771..2064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8372 1772..2064 -
1622931052.8498993-CDS-H-paniculata_contig8372:2518..26001622931052.8498993-CDS-H-paniculata_contig8372:2518..2600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8372 2519..2600 -
1691481568.283752-CDS-H-paniculata_contig8372:2518..26001691481568.283752-CDS-H-paniculata_contig8372:2518..2600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8372 2519..2600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8372.16387.1

>prot_H-paniculata_contig8372.16387.1 ID=prot_H-paniculata_contig8372.16387.1|Name=mRNA_H-paniculata_contig8372.16387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
ALILLLLLLLLLLLLWAANIELWRAQYNRLNKKRDSEGRLLPTALPTMVG
DKRDEGHHSSTISSSKKRRGNNRGLSAGEGSGDDDRTKELEEPARFVLCG
DDTGRGIDYGIMNKGSWKTLEQYCEKWGIKQAHLDSIYARFERTIIRTEH
LDFTSKPQFHASLDFLADQFMATSGEFAAQLFIQTWFLRHERGLLPPKDR
RCVDFARLVIMCCDLARMGDYELLATLWGCVLHRQV
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mRNA from alignment at H-paniculata_contig8372:344..2600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8372.16387.1 ID=mRNA_H-paniculata_contig8372.16387.1|Name=mRNA_H-paniculata_contig8372.16387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2257bp|location=Sequence derived from alignment at H-paniculata_contig8372:344..2600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTAATACTACTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGTGGGC
AGCAAATATCGAGCTATGGAGAGCACAATATAGTGGGTACCAATAGTAGT
ACCGTATCTATAGTAGTTGTCAACGGAACCTTTCATCTTTTGGTATGCCT
CTCTCGACATGGGATCTGAGAAAAAGTGCCCCCAGTACTCCAGTATTTAA
AGGGACGACCAAACTGTAGAAAACTCGAGACGTCTATCCACTTGTCCTTG
GGTTGGGCGAAAGTATTTCTTGCGGTGGAATACTCAGACTAATTCAACGC
ACTGTATTCGCTTAATAGAAATAGCATCAGAAACAAAAGCACCCCGTACA
GTCACGTACTTTGAAAACCTCTTACGTGCAGCATGTGCTGTTGTGTGCAT
TTACCCCGAATCCTTGAGCTGTCCACTTGTGACCAACATCGATGAAAAAT
ACATATGTAAACAAAATTTGAAACATCGAATGCAGAGAATAAGCGTTGGC
ACCAACGGTGTGACATAGCTGCGGAATACACAACAGATCGCTTGAACAAG
AAAAGGGATTCTGAAGGCCGTCTTCTCCCTACAGCGCTGCCAACGATGGT
GGGGGATAAGAGAGACGAGGGACACCATTCGAGTACTATTAGTAGCAGTA
AGAAGCGCCGAGGTAACAATCGTGGGCTATCCGCGGGAGAAGGGAGCGGG
GATGATGATCGAACAAAAGAGCTAGAGGAGCCTGCGCGGTTTGTGCTGTG
TGGGGATGATACGGGCAGAGGTATCGACTACGGGATCATGAACAAGGGCT
CTTGGAAGACACTTGAACAGTATTGCGAGGTTAGTACCTGGTGATACAAA
TTTGGACGCAAGTCGCAGCGGTACATAAATGTGAGGCAACGTATCAAAAG
CTGCATGTCTGATGGACGAGCTTGACGTATGAACGTAATGTATTTAGGGC
CACATCGCGTACCTTCCCTCTACGATACTCGCACTACTAATACAGTATCA
ATATGCCCTCCCACTACAGGCGGCTTTTACCACAACACCACAATACCACA
CGAAAAGGAAACAAGTTAATCATGGCAAAACAAGCGATTACCCAGGATAT
GCCTCTGCGATCTATATTGAACGTTATCTAAAGAAGACGAACACCTGCAG
AGTATGCCGGATAAATCGGATCAGAGCTAACCTATTGTTTTCTATCCAAC
CGGTGATGAATTTTCCTTTCTCGTCAACTCGAGCAGAAATCATACGGTTT
CTCTGCTAGAGATACGAGCATACGTGATTCTCCGGAGTAGGCATTTGTAT
TCCTTCATGTTAATTTGCTTTAGCAAGCTACACTTCCATCGTCTGTTCTT
GCTTCTTGGCACATTCCGGCGATGGATTGAACTTTCAGAAATGGGGCATC
AAGCAGGCACACCTGGACTCCATCTACGCTCGATTCGAGCGCACGATTAT
TCGCACCGAGCACTTGGACTTTACTTCAAAGCCACAGTTTCACGCTAGCC
TCGACTTCTTGGCGGTAAGAACACACAATAGATCGCGTGCGATCGGTGCG
AGTAGCAAAGCCGTGGGCAAGTACCAGGGACACGGTATACCCAGCTTTTT
GAAGAACTACTTCCTATTTCCTTGCCGGTCGAGATTGTGTTTTCGCGGTT
ATTCAGCAGGTTATCTGTGCAAAACCACAGCCGACAGAATACGCGCTTCA
AATACTCTCTTGTGAGTATCTGGGGGCGGGGAGATGGCACTATCATACTC
CGGAGTACATACTAAATTTAACCAGAACGCGCTTTATAGATATATTTCGT
CGTGTGTTTAGTGGCCCACATCGTGAGTAACTCTGCTGATTCGATATCAA
CCACGTAAATAGGGATTTCTATTCAAGCGAGAGTAGATAGCATGTACAAC
AAATCTCGTTCGTGAATATTCGAAGCCTGATCCGCAGCTCGCAGGAGTAG
TTTGAACATGCATGGTGCCCTCATATTTTTAACAGACTTACCTGTATCAC
ACAAACGCTCGTTTGTTCATCATGATCCCCCCCCGTCCCCATTTCCCTAG
GACCAGTTTATGGCAACCTCGGGGGAATTTGCAGCCCAGCTTTTCATTCA
GACGTGGTTTCTTCGGCACGAAAGGGGACTCCTGCCCCCGAAAGATCGGC
GCTGCGTGGACTTCGCCCGCCTGGTGATTATGTGTTGTGACCTGGCCAGG
ATGGGAGACTATGAGCTCCTGGCTACTTTGTGGGGATGTGTTTTGCACAG
GCAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8372:344..2600-

>mRNA_H-paniculata_contig8372.16387.1 ID=mRNA_H-paniculata_contig8372.16387.1|Name=mRNA_H-paniculata_contig8372.16387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig8372:344..2600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTAATACTACTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGTGGGC
AGCAAATATCGAGCTATGGAGAGCACAATATAGCTCTAATACTACTACTA
CTGCTGCTGCTGCTGCTGCTGCTGCTGTGGGCAGCAAATATCGAGCTATG
GAGAGCACAATATAATCGCTTGAACAAGAAAAGGGATTCTGAAGGCCGTC
TTCTCCCTACAGCGCTGCCAACGATGGTGGGGGATAAGAGAGACGAGGGA
CACCATTCGAGTACTATTAGTAGCAGTAAGAAGCGCCGAGGTAACAATCG
TGGGCTATCCGCGGGAGAAGGGAGCGGGGATGATGATCGAACAAAAGAGC
TAGAGGAGCCTGCGCGGTTTGTGCTGTGTGGGGATGATACGGGCAGAGGT
ATCGACTACGGGATCATGAACAAGGGCTCTTGGAAGACACTTGAACAGTA
TTGCGAGATCGCTTGAACAAGAAAAGGGATTCTGAAGGCCGTCTTCTCCC
TACAGCGCTGCCAACGATGGTGGGGGATAAGAGAGACGAGGGACACCATT
CGAGTACTATTAGTAGCAGTAAGAAGCGCCGAGGTAACAATCGTGGGCTA
TCCGCGGGAGAAGGGAGCGGGGATGATGATCGAACAAAAGAGCTAGAGGA
GCCTGCGCGGTTTGTGCTGTGTGGGGATGATACGGGCAGAGGTATCGACT
ACGGGATCATGAACAAGGGCTCTTGGAAGACACTTGAACAGTATTGCGAG
AAATGGGGCATCAAGCAGGCACACCTGGACTCCATCTACGCTCGATTCGA
GCGCACGATTATTCGCACCGAGCACTTGGACTTTACTTCAAAGCCACAGT
TTCACGCTAGCCTCGACTTCTTGGCGAAATGGGGCATCAAGCAGGCACAC
CTGGACTCCATCTACGCTCGATTCGAGCGCACGATTATTCGCACCGAGCA
CTTGGACTTTACTTCAAAGCCACAGTTTCACGCTAGCCTCGACTTCTTGG
CGGACCAGTTTATGGCAACCTCGGGGGAATTTGCAGCCCAGCTTTTCATT
CAGACGTGGTTTCTTCGGCACGAAAGGGGACTCCTGCCCCCGAAAGATCG
GCGCTGCGTGGACTTCGCCCGCCTGGTGATTATGTGTTGTGACCTGGCCA
GGATGGGAGACTATGAGCTCCTGGCTACTTTGTGGGGATGTGTTTTGCAC
AGGCAAGTGGACCAGTTTATGGCAACCTCGGGGGAATTTGCAGCCCAGCT
TTTCATTCAGACGTGGTTTCTTCGGCACGAAAGGGGACTCCTGCCCCCGA
AAGATCGGCGCTGCGTGGACTTCGCCCGCCTGGTGATTATGTGTTGTGAC
CTGGCCAGGATGGGAGACTATGAGCTCCTGGCTACTTTGTGGGGATGTGT
TTTGCACAGGCAAGTG
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