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Homology
BLAST of mRNA_H-paniculata_contig8332.16347.1 vs. uniprot
Match: D7FPW1_ECTSI (Sulfate permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW1_ECTSI) HSP 1 Score: 214 bits (546), Expect = 2.210e-56 Identity = 112/163 (68.71%), Postives = 131/163 (80.37%), Query Frame = 2
Query: 686 ERLPGVEVMRFGASLTFANKDIFRRAVIKMVERSDSEACHAEKTGLSQKLPLQYVILDSSSIHDLDSSALKMLEALVALLVARQPPVEMFLAPVSDPLMVQIHKSPMLSATLGRRYFLGILPAVRYASDQIAGGMLIAPPDKYYKVMSNLSLGHTDEHQLQDI 1174
+R PGVEV+RFGASLTFANKD+FRRAVIK+VE++D+E AE G K+ LQYVILDSSSIHDLDSS+LK LE LVALLV R PP+EMFLAPVSDPLM+Q+ KSP+L ATLGRRYFL AV YA Q+A G L+AP Y+KVMS++SLG+ DE L DI
Sbjct: 361 KRQPGVEVIRFGASLTFANKDVFRRAVIKVVEKADAERRLAESQGRPPKVALQYVILDSSSIHDLDSSSLKTLEGLVALLVDRDPPIEMFLAPVSDPLMMQLRKSPLLCATLGRRYFLSTATAVTYALQQVAAGQLVAPASLYHKVMSSISLGNLDEGDLDDI 523
BLAST of mRNA_H-paniculata_contig8332.16347.1 vs. uniprot
Match: A0A6H5L827_9PHAE (SulP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L827_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.130e-37 Identity = 114/297 (38.38%), Postives = 132/297 (44.44%), Query Frame = 2
Query: 680 DAERLPGVEVMRFGASLTFANKDIFRRAVIKMVERSDSEACHAEKTGLSQKLPLQYVILDSSSIHDLDSSALKMLEALVALLVARQPPVEMFLAPVSDPLMVQ------------------------------------------------------------------------------------------------------------------------------------IHKSPMLSATLGRRYFLGILPAVRYASDQIAGGMLIAPPDKYYKVMSNLSLGHTDEHQLQDI 1174
DA+R PGVEV+RFGASLTFANKD+FRRAVIK+VE++D+E AE G K+ LQYVILDSSSIHDLDSS+LK LE LVALLV R PP+EMFLAPVSDPLMVQ + KSP+L ATLGRRYFL AV YA Q+A G L+A Y+KVMS++SLG+ DE L DI
Sbjct: 330 DAQRQPGVEVIRFGASLTFANKDVFRRAVIKVVEKADAERRVAESQGKPAKVALQYVILDSSSIHDLDSSSLKTLEGLVALLVDRDPPIEMFLAPVSDPLMVQESFRVVRELSPKQPFLARLVLSFTVDAVATPGDGAAVYAVCFRRCHGRSRLVSVVYARSTESFVRYSSASQHSQPGTGKKRGGWWSHGVKRKLKKTAIGASSKIYRDDFHPKLFFLFFKECCSKCQCTPGFILRKSPLLCATLGRRYFLSTATAVTYALQQVAAGQLVASASLYHKVMSSISLGNLDEGDLGDI 626
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 201.8 |
| Seed ortholog evalue | 2.3e-49 |
| Seed eggNOG ortholog | 2880.D7FPW1 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | secondary active sulfate transmembrane transporter activity |
| EggNOG OGs | COG0659@1,KOG0236@2759 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 3274 |
| Cds size | 468 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8332.16347.1 >prot_H-paniculata_contig8332.16347.1 ID=prot_H-paniculata_contig8332.16347.1|Name=mRNA_H-paniculata_contig8332.16347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MRFGASLTFANKDIFRRAVIKMVERSDSEACHAEKTGLSQKLPLQYVILD SSSIHDLDSSALKMLEALVALLVARQPPVEMFLAPVSDPLMVQIHKSPML SATLGRRYFLGILPAVRYASDQIAGGMLIAPPDKYYKVMSNLSLGHTDEH QLQDI* back to topmRNA from alignment at H-paniculata_contig8332:1574..7167- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8332.16347.1 ID=mRNA_H-paniculata_contig8332.16347.1|Name=mRNA_H-paniculata_contig8332.16347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5594bp|location=Sequence derived from alignment at H-paniculata_contig8332:1574..7167- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATAGTGCACATCTGCGTATACGTTTGACCTGCTATTTACTCTATAGTACT
TTCTCCAAACCGTTTTCCTATAGTATAGCCTGCTGTCCCGCTGGTTTAGC
TATCCTTGACAATTGGCGCGTGTGGTAAACGTTGCTATGTAGTAAACAGT
TGGTGAAGTTCTTGCGCCTCCATGAAGTGTATTACTGGCCGTCTTGGAAC
TGCTGCGTGTTGTTCCTGTCACGTAACATGGACCTAGTATGTGGGTTTTT
ATCAGTTTCCAACGTGTTCCGCAGACCAAGATAGATCCAATCCATCCCTT
CATCTCCTCCATATAGTAGTAGCAGCAGGAGGAGTGCAGTATGAGCAACA
GGGAGCAAGCTTGTTGTTGTGTAGTGCTCCTGGCCAAGCGGATACCAATC
TTCGACAATAGCGCCGGCCTGCTCGCTACCTGGTAATTCTACAGTTGAGA
TTTTGTGGCCCAGCATGGAGTGATACACACGAGCAAGATTGTTTTTATCC
CCCTATCTCTCTCTTGTGCTAGTCATCTCGTTTCGCACTTTGGATCTTCA
TTTGTCCTCACCCATTGAACAATTATATCAGGAAAGACATGGCTGGGTAG
TTGTTACTGTTTGTTTATTGGAGTTTAATGGTTTCTCTCCCTCCCCTCCC
CTCCCCAATGATTGAGTAATTAATGTACAGATGCTGAACGCCTACCGGGC
GTGGAGGTGATGCGCTTTGGCGCTTCGTTGACGTTCGCCAATAAGGACAT
CTTCCGTCGGGCAGTAATCAAGATGGTCGAGAGGTCAGACAGCGAAGCGT
GTCATGCGGAGAAGACTGGATTGTCACAGAAGTTGCCGTTACAGGTACAC
ATATGTGTGTGATCTGGAGTGTGATTCACGAATGCCGTATTTGTCGTATT
TGTCGTTTTTGTTGTTTTTGTTGTTTCGGCGCAATTTGTCATCGTCATAA
TCACCAGTGTACTACTACATTCGTTCGCGTTCTGTTCATTCTGTTGTAAA
ACCCTGTTATTGAATTATTTTTTACATCTAGTTTTTTGGGTATCGTTTGG
AATCCATGTATCAGATATAATGTCTCCCATCTATCTAGATATGATCACGG
AAGCAAGAATATTTTTGTTGAATAAATAATATATCATTTAAAAAAAAATA
TATATATATATATATTTTTTTTTTATGTTGTCTTTTTTTTCATTTCATGA
TATTACTTCTTACAAAAAGAAGTTTTTGCGAGTTTTTTTCTTTTTTGGTC
GTCACTTTTGATCGGGGAAACAATTATCCAAAAAAACTCCATGTGGAAGT
TATGACCAAGCGCCCGGAGGGAAACAGTCAGTCAGAAGTAAATCGACGGT
GTGGCATGGAAAGATAGATATACGTTCAAATGCAGTGCATTCATGTTCCA
CCACGACGAGGTTTTACGTAAGCCGACTATTCTTTACTCTTGTTGTGGGT
GGGCTTTGGCCTAGGATTGTCATTCTCCAGATCAAACACGATATACGCAT
GCTGTACGTCATTGGTCGGTCTCGCGAAGTGTGCTTTGAGGGGCGGGCGG
GATGGATTCTTGTTTTATCATTGTAGCCATCGTCATCCATGACAACGGAG
GCAGCATGGGGAAGCCTTCCAACAGCAACTGAAGGTCGCCATCGCTGCCC
AGCAATGGGAGCTCTATGTGTGCTCTTGCAAAGCTGCAGTCCCACGGCTA
GCGCATCGGCATCATCTGTCTGTCTACCTTGGCTGTGTCAATGTGAACAT
CTGATCTGTGACAGATGTAACAAACAATTAGTATTCCTTTTGCGTATGTG
AGAGAGTTGTGTGGGGTGTGACAGATTCGTGCTGTATGGTCTGTGGTGAT
TGGCTACGATCATGATCATGAGATACTCCGCATGCGTGCAAAATCTTATA
TCGGCTTGAGATTTTTGTCCTCGAAAAAAACACAGGTATAGGTGGGGGGG
AACTTTTGCCTACTTGGGTAATGTTACGGGGTCTGGAGAAAATGGGGTCA
TTTTTCCCGAGAAAAATTCTCCATGGCTTGTACAACGGGTTTTTTTTTCG
GGAAGAAACTCGCCCGACAAAATGATGTTCTCGGAAAATCTCCTGCCGTA
AGAAGTGGTCTGAAGTAAAAGAAAGCATTTGAGTTCTATATTGGGAATGT
AAAAGAGCACGGCAGCATTGGTATCTTTCCAGAGCGGTGGTGACACATTG
ATGCTATGTCGCTGCTGCTCGTAGAGTATACTTTTTACATTATATAGTGG
TAAAGGATACTTGTCTTTGAACAGACCTCTGTGCTAACACACAATATGCT
TTTGTTGCCTTCTAAATTAGTCATGCCTCCAGCACATCCACGCCGCGTTT
GTAGTAGCCAACAGTTGATCCCTACCCTACCCCGTGACCTTGCGTGCAAT
CCTTTTTCTTTGTAGTATGTGATTTTGGACAGCAGCAGCATTCATGACTT
GGACTCAAGCGCGCTGAAAATGCTCGAGGCGTTGGTAGCTCTGCTTGTGG
CCCGCCAGCCCCCGGTCGAGATGTTCCTGGCGCCCGTCAGCGACCCTCTA
ATGGTGCAGGTACGAGCACTCGCTCTTTTTTTTTTTTATTCCCCCGTTTT
TTTTTCCTCGGTTAGCATTCTGCGGATGCAGTTTGGGTGTTGGTTTTGCT
TCGCAGGTACAAGATATACGCCATGTCTTTCGGTTCAATGTATAGCTGTA
GTATGGGTCCTAGGATTTTCGTGTCTGCCCCCCCCCCCCGTGTTTGTAAA
GACAGCTGCAGCCAGTTTATGTAGTGAACAACCCGCGTTATTTGTGGTGC
TGCAGTGCGGTAACACTGGACTGAAGTATGAAATGTACTCTCATGCCAGC
TTGGTAGAAGCTTGCGCCATAATTATCCACTGTACCCGTTCCTCCCTGTG
GGCTTGCGTGCTGCGCGCATGTGCCCCGTGTTATATGACGGTGCTGGGGT
GTTCTTACTATTGATGTGCAGACTTTGTGGTGACGGCCGCTTCAGGATGC
GTTTTACAGTTGGATTTGTCCTCGTCTTTTTTTTCTTTTTCTTATTTTTT
TATTTATTTTTTTTGTCGTCAGCACAAACGAAATTGTGAGCTGTACAAAG
CGAGCGGTGATTCATGGGGGTCATGGGTTGTGCACAGCGGGAGGTTGATA
CGGTACCTGTTGCCAACGTGCAACAACGAAATCAGTTGAGAAAAGAAAAC
CACTCAATTTTCCCTCGCGTCTCTGCTAACCCTCCTCCCTCCTCCCTCCT
CCTCCCTCCCTTCTCCTTCATGACCTCTGTCTTCGGTGGTGACCGGCCGT
GGGTGCAGATCCACAAATCTCCGATGCTGTCGGCGACGCTCGGTCGTCGT
TACTTTCTCGGTATTCTACCAGCCGTGCGGTACGCTTCAGATCAAATCGC
GGGTGGGATGCTCATCGCGCCCCCAGACAAATACTACAAAGTCATGAGCA
ACCTCAGTCTCGGGCACACGGACGAGCACCAGCTCCAAGACATATAATAC
CGCCAATAGGTGCGGTGGTTTTGTGAGGACGTCTAGTGCCGTAGATTTGT
GCCGTGTTTTTCAGGATGTTTTTTTTGGGAACCACCTGACTAGAACATGC
AATTGTGCGTAGTGCCACTGCTCCTGCTCGTGGGGGGGGGGATAACTCAC
GCTTATTTGTGTTGATGCGTGTTCAAGCTGCTGCTCATGATTTACGTGCG
TGTATCATAACCGGTAGTCCATCTATTGACCCCATGTCCTCGAGAGTTGG
AGGAGCGATGACTGATGGTCAATCGCCTCGAGTCTACTAGGTCACGCTCA
TTTTTCGTAACGCAGAGTGAATTTCTAGAATTATGGTTGGCGATGTGCCA
AATGGGGCATATGCACCCTCGTCCCTCAGCCGCGACCATATTTGTGGGGC
TACAGGAGCGTGCAATGGCATATAGAGCATATCTATCTATACAGCTGCCG
CAGAGCTTTAATACAACAACGTGTTCTGCTGGACACACAGCAGGGGTCAC
CGTCAGTGAAGGATTTAAACTGTATGGGCAAGGCACTCAACCAGGGTATT
GTAAGATGGTGAAGTGCAAATCCGGGGGAGTTTTTTTTTTTTTTCACGGT
AGCAATGAAGGAAATAAGATGAGTCCAAATCCGAGTGGAACAACTTTTGC
CATGTCTGCTGTTGTTTCAAAGATCTGTGACGAGTGCTGTTTGCAACATG
CTCGACGTCGCTGAAGCGAGCACGTGAAATCAAATTCGTCGCGGGGTATA
TAGAATGGGTCCTTTGGAAGACAGATACCATAATATACGGTAGGCGTTGA
TGTCGCGCACTAGAGCCCAGGCTTTGAGTTTGCACGCGCGCTCGGTGCTT
GGTTGCATGCTGTCAACTCGATGATGACATTGTCATGTCATCACGCTGGT
TCGACCTTATAGGGCCTATAGTGTTCAGCGTTCCCGGGGCTGATTTTAAT
GACCTGCCACACACATCTACACTAATGTTGTTGTCCGTTGCCGTGTGTGA
GAACGAATGCGCAGGGAGCATTATGGGGGTGGCGCTATGCCTTCTGGGAA
GGCTTGCGCCGATGTTAACTTGAGGTGTTCTTGTTTATCGTGTGCTTGGT
GATTTTGTGTTGGTGTCTTCACTTTTTTATGTTTCATGTTCTATTAAGAA
TAAGTAGGAGGTCTACGGCGGGTGACGGATGAAGTGTGAACACCTGTGTT
TCGCACAAGGAAGAGCTGCTTGTGGCCCGAAAAATGTACACGTCCTAGTT
TCGAAAGGAAAATATCGGGATTTGATTGTTGCCTGAAGATGTAATGTTTG
ATTTTCTCGGTAGGGCGTTTTAATGTTTTGTCTTTTTTCCCTGCATAATA
TCTTGATAATTTGTCTCAATTAATGCTGCTAGGGCGATATATGATGAAAG
TGTACTCTTGAGCGCGAAATATATTTTTTGTGTTTGTTCTCGATGCACAT
AGCCGTTGCCCCTACCCCACCCCTAACCGCGCGCGCGCTATTTGTGCAGA
AGTTGCCATGTCCTTGCAGTCTTTTAGAAAAAAAATAGATATATATATAT
GGCCTATTTGGTGCTGTACATAAACTAAAGATTCTGCAGGGAAGCACATG
ACTGGATTTACTTCGCGATCTTTGACTAGGACAATGGACAATGTTGAGAG
TGGTCGCACGTAGAGAAAAAAGGCACAAGGAATACTCTTCGTTGTCGACA
GGGTCGATATGCTGATGTTGCCATGTGTAGATCAGTCTTGTGAACGTTAG
TGTGTGGCCTGGTTGATCTTTGGTGGTATCCGAAAGTATCGCGTACTCTT
GCATCAGCATAGGCTCGGTGGGGACGCTTGGTGGGTAATATTTTGGATTG
CGATCATCATCTTCTATCTAACCTCGAAGGTGTTTTGCATAACACCTGTA
TTTTTGTCTCCACCCCGTGCGATAGATACTAAGGCAGTCGTTTCTATTTT
ATTCTCCGGACTGCGCGTCCCTATCAGTTGATGTACTAATATGCCGAGAA
ACAGAACAACCAAGCGTTGGACAGCTCCTCGTGGAGGAGAGCTGAAAATA
CTCCTCTGGATGTCATAGGTATCTTTTTCGCGATCGGTAGCTAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig8332:1574..7167- >mRNA_H-paniculata_contig8332.16347.1 ID=mRNA_H-paniculata_contig8332.16347.1|Name=mRNA_H-paniculata_contig8332.16347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig8332:1574..7167- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCGCTTTGGCGCTTCGTTGACGTTCGCCAATAAGGACATCTTCCGTCG GGCAGTAATCAAGATGGTCGAGAGGTCAGACAGCGAAGCGTGTCATGCGG AGAAGACTGGATTGTCACAGAAGTTGCCGTTACAGATGCGCTTTGGCGCT TCGTTGACGTTCGCCAATAAGGACATCTTCCGTCGGGCAGTAATCAAGAT GGTCGAGAGGTCAGACAGCGAAGCGTGTCATGCGGAGAAGACTGGATTGT CACAGAAGTTGCCGTTACAGTATGTGATTTTGGACAGCAGCAGCATTCAT GACTTGGACTCAAGCGCGCTGAAAATGCTCGAGGCGTTGGTAGCTCTGCT TGTGGCCCGCCAGCCCCCGGTCGAGATGTTCCTGGCGCCCGTCAGCGACC CTCTAATGGTGCAGTATGTGATTTTGGACAGCAGCAGCATTCATGACTTG GACTCAAGCGCGCTGAAAATGCTCGAGGCGTTGGTAGCTCTGCTTGTGGC CCGCCAGCCCCCGGTCGAGATGTTCCTGGCGCCCGTCAGCGACCCTCTAA TGGTGCAGATCCACAAATCTCCGATGCTGTCGGCGACGCTCGGTCGTCGT TACTTTCTCGGTATTCTACCAGCCGTGCGGTACGCTTCAGATCAAATCGC GGGTGGGATGCTCATCGCGCCCCCAGACAAATACTACAAAGTCATGAGCA ACCTCAGTCTCGGGCACACGGACGAGCACCAGCTCCAAGACATATAAATC CACAAATCTCCGATGCTGTCGGCGACGCTCGGTCGTCGTTACTTTCTCGG TATTCTACCAGCCGTGCGGTACGCTTCAGATCAAATCGCGGGTGGGATGC TCATCGCGCCCCCAGACAAATACTACAAAGTCATGAGCAACCTCAGTCTC GGGCACACGGACGAGCACCAGCTCCAAGACATATAA back to top
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