mRNA_H-paniculata_contig8332.16347.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8332.16347.1
Unique NamemRNA_H-paniculata_contig8332.16347.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8332.16347.1 vs. uniprot
Match: D7FPW1_ECTSI (Sulfate permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW1_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 2.210e-56
Identity = 112/163 (68.71%), Postives = 131/163 (80.37%), Query Frame = 2
Query:  686 ERLPGVEVMRFGASLTFANKDIFRRAVIKMVERSDSEACHAEKTGLSQKLPLQYVILDSSSIHDLDSSALKMLEALVALLVARQPPVEMFLAPVSDPLMVQIHKSPMLSATLGRRYFLGILPAVRYASDQIAGGMLIAPPDKYYKVMSNLSLGHTDEHQLQDI 1174
            +R PGVEV+RFGASLTFANKD+FRRAVIK+VE++D+E   AE  G   K+ LQYVILDSSSIHDLDSS+LK LE LVALLV R PP+EMFLAPVSDPLM+Q+ KSP+L ATLGRRYFL    AV YA  Q+A G L+AP   Y+KVMS++SLG+ DE  L DI
Sbjct:  361 KRQPGVEVIRFGASLTFANKDVFRRAVIKVVEKADAERRLAESQGRPPKVALQYVILDSSSIHDLDSSSLKTLEGLVALLVDRDPPIEMFLAPVSDPLMMQLRKSPLLCATLGRRYFLSTATAVTYALQQVAAGQLVAPASLYHKVMSSISLGNLDEGDLDDI 523          
BLAST of mRNA_H-paniculata_contig8332.16347.1 vs. uniprot
Match: A0A6H5L827_9PHAE (SulP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L827_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.130e-37
Identity = 114/297 (38.38%), Postives = 132/297 (44.44%), Query Frame = 2
Query:  680 DAERLPGVEVMRFGASLTFANKDIFRRAVIKMVERSDSEACHAEKTGLSQKLPLQYVILDSSSIHDLDSSALKMLEALVALLVARQPPVEMFLAPVSDPLMVQ------------------------------------------------------------------------------------------------------------------------------------IHKSPMLSATLGRRYFLGILPAVRYASDQIAGGMLIAPPDKYYKVMSNLSLGHTDEHQLQDI 1174
            DA+R PGVEV+RFGASLTFANKD+FRRAVIK+VE++D+E   AE  G   K+ LQYVILDSSSIHDLDSS+LK LE LVALLV R PP+EMFLAPVSDPLMVQ                                                                                                                                    + KSP+L ATLGRRYFL    AV YA  Q+A G L+A    Y+KVMS++SLG+ DE  L DI
Sbjct:  330 DAQRQPGVEVIRFGASLTFANKDVFRRAVIKVVEKADAERRVAESQGKPAKVALQYVILDSSSIHDLDSSSLKTLEGLVALLVDRDPPIEMFLAPVSDPLMVQESFRVVRELSPKQPFLARLVLSFTVDAVATPGDGAAVYAVCFRRCHGRSRLVSVVYARSTESFVRYSSASQHSQPGTGKKRGGWWSHGVKRKLKKTAIGASSKIYRDDFHPKLFFLFFKECCSKCQCTPGFILRKSPLLCATLGRRYFLSTATAVTYALQQVAAGQLVASASLYHKVMSSISLGNLDEGDLGDI 626          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8332.16347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPW1_ECTSI2.210e-5668.71Sulfate permease n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5L827_9PHAE1.130e-3738.38SulP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8332contigH-paniculata_contig8332:1574..7167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue2.3e-49
Seed eggNOG ortholog2880.D7FPW1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.secondary active sulfate transmembrane transporter activity
EggNOG OGsCOG0659@1,KOG0236@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size3274
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8332.16347.1prot_H-paniculata_contig8332.16347.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8332 3671..6458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931046.915756-UTR-H-paniculata_contig8332:1573..36701622931046.915756-UTR-H-paniculata_contig8332:1573..3670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8332 1574..3670 -
1691481565.4119902-UTR-H-paniculata_contig8332:1573..36701691481565.4119902-UTR-H-paniculata_contig8332:1573..3670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8332 1574..3670 -
1622931046.996768-UTR-H-paniculata_contig8332:6458..71671622931046.996768-UTR-H-paniculata_contig8332:6458..7167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8332 6459..7167 -
1691481565.4522738-UTR-H-paniculata_contig8332:6458..71671691481565.4522738-UTR-H-paniculata_contig8332:6458..7167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8332 6459..7167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931046.931199-CDS-H-paniculata_contig8332:3670..38591622931046.931199-CDS-H-paniculata_contig8332:3670..3859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 3671..3859 -
1691481565.4254262-CDS-H-paniculata_contig8332:3670..38591691481565.4254262-CDS-H-paniculata_contig8332:3670..3859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 3671..3859 -
1622931046.9627423-CDS-H-paniculata_contig8332:4608..47521622931046.9627423-CDS-H-paniculata_contig8332:4608..4752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 4609..4752 -
1691481565.4344866-CDS-H-paniculata_contig8332:4608..47521691481565.4344866-CDS-H-paniculata_contig8332:4608..4752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 4609..4752 -
1622931046.9744844-CDS-H-paniculata_contig8332:6323..64581622931046.9744844-CDS-H-paniculata_contig8332:6323..6458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 6324..6458 -
1691481565.4431388-CDS-H-paniculata_contig8332:6323..64581691481565.4431388-CDS-H-paniculata_contig8332:6323..6458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8332 6324..6458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8332.16347.1

>prot_H-paniculata_contig8332.16347.1 ID=prot_H-paniculata_contig8332.16347.1|Name=mRNA_H-paniculata_contig8332.16347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MRFGASLTFANKDIFRRAVIKMVERSDSEACHAEKTGLSQKLPLQYVILD
SSSIHDLDSSALKMLEALVALLVARQPPVEMFLAPVSDPLMVQIHKSPML
SATLGRRYFLGILPAVRYASDQIAGGMLIAPPDKYYKVMSNLSLGHTDEH
QLQDI*
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mRNA from alignment at H-paniculata_contig8332:1574..7167-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8332.16347.1 ID=mRNA_H-paniculata_contig8332.16347.1|Name=mRNA_H-paniculata_contig8332.16347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5594bp|location=Sequence derived from alignment at H-paniculata_contig8332:1574..7167- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGTGCACATCTGCGTATACGTTTGACCTGCTATTTACTCTATAGTACT TTCTCCAAACCGTTTTCCTATAGTATAGCCTGCTGTCCCGCTGGTTTAGC TATCCTTGACAATTGGCGCGTGTGGTAAACGTTGCTATGTAGTAAACAGT TGGTGAAGTTCTTGCGCCTCCATGAAGTGTATTACTGGCCGTCTTGGAAC TGCTGCGTGTTGTTCCTGTCACGTAACATGGACCTAGTATGTGGGTTTTT ATCAGTTTCCAACGTGTTCCGCAGACCAAGATAGATCCAATCCATCCCTT CATCTCCTCCATATAGTAGTAGCAGCAGGAGGAGTGCAGTATGAGCAACA GGGAGCAAGCTTGTTGTTGTGTAGTGCTCCTGGCCAAGCGGATACCAATC TTCGACAATAGCGCCGGCCTGCTCGCTACCTGGTAATTCTACAGTTGAGA TTTTGTGGCCCAGCATGGAGTGATACACACGAGCAAGATTGTTTTTATCC CCCTATCTCTCTCTTGTGCTAGTCATCTCGTTTCGCACTTTGGATCTTCA TTTGTCCTCACCCATTGAACAATTATATCAGGAAAGACATGGCTGGGTAG TTGTTACTGTTTGTTTATTGGAGTTTAATGGTTTCTCTCCCTCCCCTCCC CTCCCCAATGATTGAGTAATTAATGTACAGATGCTGAACGCCTACCGGGC GTGGAGGTGATGCGCTTTGGCGCTTCGTTGACGTTCGCCAATAAGGACAT CTTCCGTCGGGCAGTAATCAAGATGGTCGAGAGGTCAGACAGCGAAGCGT GTCATGCGGAGAAGACTGGATTGTCACAGAAGTTGCCGTTACAGGTACAC ATATGTGTGTGATCTGGAGTGTGATTCACGAATGCCGTATTTGTCGTATT TGTCGTTTTTGTTGTTTTTGTTGTTTCGGCGCAATTTGTCATCGTCATAA TCACCAGTGTACTACTACATTCGTTCGCGTTCTGTTCATTCTGTTGTAAA ACCCTGTTATTGAATTATTTTTTACATCTAGTTTTTTGGGTATCGTTTGG AATCCATGTATCAGATATAATGTCTCCCATCTATCTAGATATGATCACGG AAGCAAGAATATTTTTGTTGAATAAATAATATATCATTTAAAAAAAAATA TATATATATATATATTTTTTTTTTATGTTGTCTTTTTTTTCATTTCATGA TATTACTTCTTACAAAAAGAAGTTTTTGCGAGTTTTTTTCTTTTTTGGTC GTCACTTTTGATCGGGGAAACAATTATCCAAAAAAACTCCATGTGGAAGT TATGACCAAGCGCCCGGAGGGAAACAGTCAGTCAGAAGTAAATCGACGGT GTGGCATGGAAAGATAGATATACGTTCAAATGCAGTGCATTCATGTTCCA CCACGACGAGGTTTTACGTAAGCCGACTATTCTTTACTCTTGTTGTGGGT GGGCTTTGGCCTAGGATTGTCATTCTCCAGATCAAACACGATATACGCAT GCTGTACGTCATTGGTCGGTCTCGCGAAGTGTGCTTTGAGGGGCGGGCGG GATGGATTCTTGTTTTATCATTGTAGCCATCGTCATCCATGACAACGGAG GCAGCATGGGGAAGCCTTCCAACAGCAACTGAAGGTCGCCATCGCTGCCC AGCAATGGGAGCTCTATGTGTGCTCTTGCAAAGCTGCAGTCCCACGGCTA GCGCATCGGCATCATCTGTCTGTCTACCTTGGCTGTGTCAATGTGAACAT CTGATCTGTGACAGATGTAACAAACAATTAGTATTCCTTTTGCGTATGTG AGAGAGTTGTGTGGGGTGTGACAGATTCGTGCTGTATGGTCTGTGGTGAT TGGCTACGATCATGATCATGAGATACTCCGCATGCGTGCAAAATCTTATA TCGGCTTGAGATTTTTGTCCTCGAAAAAAACACAGGTATAGGTGGGGGGG AACTTTTGCCTACTTGGGTAATGTTACGGGGTCTGGAGAAAATGGGGTCA TTTTTCCCGAGAAAAATTCTCCATGGCTTGTACAACGGGTTTTTTTTTCG GGAAGAAACTCGCCCGACAAAATGATGTTCTCGGAAAATCTCCTGCCGTA AGAAGTGGTCTGAAGTAAAAGAAAGCATTTGAGTTCTATATTGGGAATGT AAAAGAGCACGGCAGCATTGGTATCTTTCCAGAGCGGTGGTGACACATTG ATGCTATGTCGCTGCTGCTCGTAGAGTATACTTTTTACATTATATAGTGG TAAAGGATACTTGTCTTTGAACAGACCTCTGTGCTAACACACAATATGCT TTTGTTGCCTTCTAAATTAGTCATGCCTCCAGCACATCCACGCCGCGTTT GTAGTAGCCAACAGTTGATCCCTACCCTACCCCGTGACCTTGCGTGCAAT CCTTTTTCTTTGTAGTATGTGATTTTGGACAGCAGCAGCATTCATGACTT GGACTCAAGCGCGCTGAAAATGCTCGAGGCGTTGGTAGCTCTGCTTGTGG CCCGCCAGCCCCCGGTCGAGATGTTCCTGGCGCCCGTCAGCGACCCTCTA ATGGTGCAGGTACGAGCACTCGCTCTTTTTTTTTTTTATTCCCCCGTTTT TTTTTCCTCGGTTAGCATTCTGCGGATGCAGTTTGGGTGTTGGTTTTGCT TCGCAGGTACAAGATATACGCCATGTCTTTCGGTTCAATGTATAGCTGTA GTATGGGTCCTAGGATTTTCGTGTCTGCCCCCCCCCCCCGTGTTTGTAAA GACAGCTGCAGCCAGTTTATGTAGTGAACAACCCGCGTTATTTGTGGTGC TGCAGTGCGGTAACACTGGACTGAAGTATGAAATGTACTCTCATGCCAGC TTGGTAGAAGCTTGCGCCATAATTATCCACTGTACCCGTTCCTCCCTGTG GGCTTGCGTGCTGCGCGCATGTGCCCCGTGTTATATGACGGTGCTGGGGT GTTCTTACTATTGATGTGCAGACTTTGTGGTGACGGCCGCTTCAGGATGC GTTTTACAGTTGGATTTGTCCTCGTCTTTTTTTTCTTTTTCTTATTTTTT TATTTATTTTTTTTGTCGTCAGCACAAACGAAATTGTGAGCTGTACAAAG CGAGCGGTGATTCATGGGGGTCATGGGTTGTGCACAGCGGGAGGTTGATA CGGTACCTGTTGCCAACGTGCAACAACGAAATCAGTTGAGAAAAGAAAAC CACTCAATTTTCCCTCGCGTCTCTGCTAACCCTCCTCCCTCCTCCCTCCT CCTCCCTCCCTTCTCCTTCATGACCTCTGTCTTCGGTGGTGACCGGCCGT GGGTGCAGATCCACAAATCTCCGATGCTGTCGGCGACGCTCGGTCGTCGT TACTTTCTCGGTATTCTACCAGCCGTGCGGTACGCTTCAGATCAAATCGC GGGTGGGATGCTCATCGCGCCCCCAGACAAATACTACAAAGTCATGAGCA ACCTCAGTCTCGGGCACACGGACGAGCACCAGCTCCAAGACATATAATAC CGCCAATAGGTGCGGTGGTTTTGTGAGGACGTCTAGTGCCGTAGATTTGT GCCGTGTTTTTCAGGATGTTTTTTTTGGGAACCACCTGACTAGAACATGC AATTGTGCGTAGTGCCACTGCTCCTGCTCGTGGGGGGGGGGATAACTCAC GCTTATTTGTGTTGATGCGTGTTCAAGCTGCTGCTCATGATTTACGTGCG TGTATCATAACCGGTAGTCCATCTATTGACCCCATGTCCTCGAGAGTTGG AGGAGCGATGACTGATGGTCAATCGCCTCGAGTCTACTAGGTCACGCTCA TTTTTCGTAACGCAGAGTGAATTTCTAGAATTATGGTTGGCGATGTGCCA AATGGGGCATATGCACCCTCGTCCCTCAGCCGCGACCATATTTGTGGGGC TACAGGAGCGTGCAATGGCATATAGAGCATATCTATCTATACAGCTGCCG CAGAGCTTTAATACAACAACGTGTTCTGCTGGACACACAGCAGGGGTCAC CGTCAGTGAAGGATTTAAACTGTATGGGCAAGGCACTCAACCAGGGTATT GTAAGATGGTGAAGTGCAAATCCGGGGGAGTTTTTTTTTTTTTTCACGGT AGCAATGAAGGAAATAAGATGAGTCCAAATCCGAGTGGAACAACTTTTGC CATGTCTGCTGTTGTTTCAAAGATCTGTGACGAGTGCTGTTTGCAACATG CTCGACGTCGCTGAAGCGAGCACGTGAAATCAAATTCGTCGCGGGGTATA TAGAATGGGTCCTTTGGAAGACAGATACCATAATATACGGTAGGCGTTGA TGTCGCGCACTAGAGCCCAGGCTTTGAGTTTGCACGCGCGCTCGGTGCTT GGTTGCATGCTGTCAACTCGATGATGACATTGTCATGTCATCACGCTGGT TCGACCTTATAGGGCCTATAGTGTTCAGCGTTCCCGGGGCTGATTTTAAT GACCTGCCACACACATCTACACTAATGTTGTTGTCCGTTGCCGTGTGTGA GAACGAATGCGCAGGGAGCATTATGGGGGTGGCGCTATGCCTTCTGGGAA GGCTTGCGCCGATGTTAACTTGAGGTGTTCTTGTTTATCGTGTGCTTGGT GATTTTGTGTTGGTGTCTTCACTTTTTTATGTTTCATGTTCTATTAAGAA TAAGTAGGAGGTCTACGGCGGGTGACGGATGAAGTGTGAACACCTGTGTT TCGCACAAGGAAGAGCTGCTTGTGGCCCGAAAAATGTACACGTCCTAGTT TCGAAAGGAAAATATCGGGATTTGATTGTTGCCTGAAGATGTAATGTTTG ATTTTCTCGGTAGGGCGTTTTAATGTTTTGTCTTTTTTCCCTGCATAATA TCTTGATAATTTGTCTCAATTAATGCTGCTAGGGCGATATATGATGAAAG TGTACTCTTGAGCGCGAAATATATTTTTTGTGTTTGTTCTCGATGCACAT AGCCGTTGCCCCTACCCCACCCCTAACCGCGCGCGCGCTATTTGTGCAGA AGTTGCCATGTCCTTGCAGTCTTTTAGAAAAAAAATAGATATATATATAT GGCCTATTTGGTGCTGTACATAAACTAAAGATTCTGCAGGGAAGCACATG ACTGGATTTACTTCGCGATCTTTGACTAGGACAATGGACAATGTTGAGAG TGGTCGCACGTAGAGAAAAAAGGCACAAGGAATACTCTTCGTTGTCGACA GGGTCGATATGCTGATGTTGCCATGTGTAGATCAGTCTTGTGAACGTTAG TGTGTGGCCTGGTTGATCTTTGGTGGTATCCGAAAGTATCGCGTACTCTT GCATCAGCATAGGCTCGGTGGGGACGCTTGGTGGGTAATATTTTGGATTG CGATCATCATCTTCTATCTAACCTCGAAGGTGTTTTGCATAACACCTGTA TTTTTGTCTCCACCCCGTGCGATAGATACTAAGGCAGTCGTTTCTATTTT ATTCTCCGGACTGCGCGTCCCTATCAGTTGATGTACTAATATGCCGAGAA ACAGAACAACCAAGCGTTGGACAGCTCCTCGTGGAGGAGAGCTGAAAATA CTCCTCTGGATGTCATAGGTATCTTTTTCGCGATCGGTAGCTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig8332:1574..7167-

>mRNA_H-paniculata_contig8332.16347.1 ID=mRNA_H-paniculata_contig8332.16347.1|Name=mRNA_H-paniculata_contig8332.16347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig8332:1574..7167- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTTTGGCGCTTCGTTGACGTTCGCCAATAAGGACATCTTCCGTCG
GGCAGTAATCAAGATGGTCGAGAGGTCAGACAGCGAAGCGTGTCATGCGG
AGAAGACTGGATTGTCACAGAAGTTGCCGTTACAGATGCGCTTTGGCGCT
TCGTTGACGTTCGCCAATAAGGACATCTTCCGTCGGGCAGTAATCAAGAT
GGTCGAGAGGTCAGACAGCGAAGCGTGTCATGCGGAGAAGACTGGATTGT
CACAGAAGTTGCCGTTACAGTATGTGATTTTGGACAGCAGCAGCATTCAT
GACTTGGACTCAAGCGCGCTGAAAATGCTCGAGGCGTTGGTAGCTCTGCT
TGTGGCCCGCCAGCCCCCGGTCGAGATGTTCCTGGCGCCCGTCAGCGACC
CTCTAATGGTGCAGTATGTGATTTTGGACAGCAGCAGCATTCATGACTTG
GACTCAAGCGCGCTGAAAATGCTCGAGGCGTTGGTAGCTCTGCTTGTGGC
CCGCCAGCCCCCGGTCGAGATGTTCCTGGCGCCCGTCAGCGACCCTCTAA
TGGTGCAGATCCACAAATCTCCGATGCTGTCGGCGACGCTCGGTCGTCGT
TACTTTCTCGGTATTCTACCAGCCGTGCGGTACGCTTCAGATCAAATCGC
GGGTGGGATGCTCATCGCGCCCCCAGACAAATACTACAAAGTCATGAGCA
ACCTCAGTCTCGGGCACACGGACGAGCACCAGCTCCAAGACATATAAATC
CACAAATCTCCGATGCTGTCGGCGACGCTCGGTCGTCGTTACTTTCTCGG
TATTCTACCAGCCGTGCGGTACGCTTCAGATCAAATCGCGGGTGGGATGC
TCATCGCGCCCCCAGACAAATACTACAAAGTCATGAGCAACCTCAGTCTC
GGGCACACGGACGAGCACCAGCTCCAAGACATATAA
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