mRNA_H-paniculata_contig8317.16335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8317.16335.1
Unique NamemRNA_H-paniculata_contig8317.16335.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8317.16335.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.820e-5
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 1 
Query:  496 SSIHVLTPNQDDVLTSGSDYKVSWEYVGSHAEDTEIFHIDVYNCGGDSDCAGD-CGDFLAPLCE--EQGCFAIDGSNTISLPEVGDESGPYFKIAVS-ADGNSDMGCSGSFTL 822
            +++ V +P   D++ + S   V W    S       F ID+Y CG  S C  D CGD++  LC   + GC    G   + +PE  D +   +K+ V+ +   SDMGCSG FTL
Sbjct:   18 NALEVTSPAAGDMIVAASSTTVEWTGTSSGR-----FDIDLYYCG--SVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDMGCSGEFTL 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8317.16335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KP11_9PHAE1.820e-534.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8317contigH-paniculata_contig8317:1727..6794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_002170.1
Exons6
Model size1186
Cds size1185
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8317.16335.1prot_H-paniculata_contig8317.16335.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8317 1727..6793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.3017557-CDS-H-paniculata_contig8317:1726..22841622931044.3017557-CDS-H-paniculata_contig8317:1726..2284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 1727..2284 +
1691481564.167722-CDS-H-paniculata_contig8317:1726..22841691481564.167722-CDS-H-paniculata_contig8317:1726..2284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 1727..2284 +
1622931044.3207903-CDS-H-paniculata_contig8317:3329..35061622931044.3207903-CDS-H-paniculata_contig8317:3329..3506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 3330..3506 +
1691481564.1797752-CDS-H-paniculata_contig8317:3329..35061691481564.1797752-CDS-H-paniculata_contig8317:3329..3506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 3330..3506 +
1622931044.3360941-CDS-H-paniculata_contig8317:4061..41521622931044.3360941-CDS-H-paniculata_contig8317:4061..4152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 4062..4152 +
1691481564.1895525-CDS-H-paniculata_contig8317:4061..41521691481564.1895525-CDS-H-paniculata_contig8317:4061..4152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 4062..4152 +
1622931044.3552716-CDS-H-paniculata_contig8317:5239..54691622931044.3552716-CDS-H-paniculata_contig8317:5239..5469Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 5240..5469 +
1691481564.1989825-CDS-H-paniculata_contig8317:5239..54691691481564.1989825-CDS-H-paniculata_contig8317:5239..5469Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 5240..5469 +
1622931044.3739219-CDS-H-paniculata_contig8317:5949..60391622931044.3739219-CDS-H-paniculata_contig8317:5949..6039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 5950..6039 +
1691481564.212827-CDS-H-paniculata_contig8317:5949..60391691481564.212827-CDS-H-paniculata_contig8317:5949..6039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 5950..6039 +
1622931044.4003937-CDS-H-paniculata_contig8317:6754..67931622931044.4003937-CDS-H-paniculata_contig8317:6754..6793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 6755..6793 +
1691481564.22299-CDS-H-paniculata_contig8317:6754..67931691481564.22299-CDS-H-paniculata_contig8317:6754..6793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8317 6755..6793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8317.16335.1

>prot_H-paniculata_contig8317.16335.1 ID=prot_H-paniculata_contig8317.16335.1|Name=mRNA_H-paniculata_contig8317.16335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=395bp
VESSTATAYASASASASSTTGGENQVASSSVSATFTSPVEISYTSTTSEG
DDNNGSSSSSSSSHEGEPTSDYSQDDIDDDFEDDDVEDDDNDATDDDSES
NGGDDDDGEEYDTDDDMEVTGGSSWTVTGSDDDSREDISTSDSSDSDSSN
SGSSDDDSDSSTEMASSIHVLTPNQDDVLTSGSDYKVSWEYVGSHAEDTE
IFHIDVYNCGGDSDCAGDCGDFLAPLCEEQGCFAIDGSNTISLPEVGDES
GPYFKIAVSADGNSDMGCSGSFTLAPASTSEPSEPSEPSEPSGCSDDDTD
MFLDDSTTFSDDVNDDLDSVTDEGTTSSVAAMIVASCGDLNSIPYPLGGV
LRVTVDADEITCRDIKTLRLGGGELLISSENGVVFSGVRFDVESG
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mRNA from alignment at H-paniculata_contig8317:1727..6794+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8317.16335.1 ID=mRNA_H-paniculata_contig8317.16335.1|Name=mRNA_H-paniculata_contig8317.16335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5068bp|location=Sequence derived from alignment at H-paniculata_contig8317:1727..6794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGAATCCTCTACGGCTACCGCATATGCTTCGGCTTCGGCGTCTGCCAG
TAGTACCACAGGCGGAGAAAATCAAGTTGCTTCGTCTTCAGTTTCTGCTA
CTTTTACCAGCCCGGTCGAAATTAGTTACACTTCGACGACTTCGGAGGGT
GATGATAATAATGGGAGTAGCTCCAGTAGCAGTTCCTCCCATGAAGGCGA
ACCAACAAGCGACTACTCTCAGGATGATATTGACGATGATTTCGAAGACG
ATGATGTCGAAGACGATGATAATGATGCAACAGATGATGACAGCGAGAGC
AATGGCGGTGATGATGATGATGGTGAGGAGTATGATACAGATGACGATAT
GGAAGTAACGGGTGGATCTTCGTGGACGGTTACGGGATCTGACGACGACA
GTAGAGAGGATATCAGCACTTCGGATAGCAGCGATTCAGATAGCAGCAAT
TCGGGTAGTTCTGATGATGACTCTGACAGCAGCACGGAGATGGCCTCTTC
GATACACGTGTTGACACCAAACCAGGATGACGTGCTTACTTCCGGCAGTG
ATTACAAGGTGAGTTTTACGAGGCCGCACAGACGGTAGGGCGTAGGTGTT
GTGGGCCATATAGGATATAAGTATTATTGTACATCTTCATTTTTCCACAA
AAAATCTCGGTCGCCCGTATCGTTCCGTCAATTCTTGTGTGGTCAGCTGT
GAAACATTGAGGCATAGTGCCTGCATGATTTGTCGTCCCCGTTGATTGCT
AGTCGGCGGAACCGCCACTAATTACAGAGCATTTATAGCAATTAGAGGTT
AAACACCATGGCAGCAGCAAGTGTACGATAGTCGCAAACAGGTCCCTACA
ACCTCTGATAATCCTACGGAGTTTTGCATACACTAAAACTATGGTAACTA
TTTTCGCGTGACCCCGCAATATATTCTCAATTCATGTGCTCGCGTTTGTG
GACTCTTCTCTGTTATACCGCTACAATACTGCAGTATACTATCTTGAATC
ACAGATTCAAAGGACGTATTAAACGGAAGAGAGCGGAGAGAACCCTATGC
GCACTGTCTGAACTGTATAGTTGCTGGACTAGGGTCACAGCGAGATATCC
AAAGAGACGCATTAAAAAGGCTGTGGGCTGGGTTTTCCCTACAGTTTTCC
GTCAAATTCTTCTATTGGTCCTGTCGCTAAAAAATACTGGAAAATGTCTC
GGGTATTCAGATTTCTCCTATGTAGCCAAACAACCCGAACCTCCAGTTCG
AACTGACTCTGAGATTAGGGTAGGGTGGCGAAGTAGTCAGGACATTCCAA
TAAGCTAATCGGGGTTTCTGGACGGAGGTACCCAGATTGTTTCACTTATG
GTTGTGCAACCATTATGTAAGCTAACAAAAAAAACAGTGTATTCATTGTC
TGCGCTGGTGAACAAGCCTCGAAAAAACTCAGGGTCGGGCTCTATTCCAC
TAAGCTAATGAGGGCTTTCGACGCAGAAGTACTCAATTTCACTTGGGGTT
GTGCAACCCCAATGTACGCTAACTAAAAAATGAGGGTGACTTGCTGGCTC
TCGACAAAACTCGATGATTGCTTCCACCCCTCCTGTTTTGCTTTTTTCGA
CAGGTCTCGTGGGAATACGTGGGCAGTCATGCTGAAGACACGGAAATATT
TCACATAGACGTATACAACTGTGGAGGCGACTCAGATTGTGCGGGAGATT
GTGGGGATTTTTTGGCGCCGTTATGCGAGGAGCAGGGTTGTTTTGCCATC
GACGGGAGCAACACCATTTCCTTGCCCGAGGTACCTGGAATGGAAACCTT
GGAGAGTATTGCGACAATATAAGTAGCAGATACGGTTACTGGGTAGTCGC
CTTGGGGTTGCTGGGTTTGTTGACGTATTTGTATCCTCGCTGGAGTAGCC
ATACTAATGGAGGACACAACCGATCAATTTTCTTTTTCACGACTGCAAAC
CCTAGAGTATTTTGCCGCGTGAAGAAGAAATCGATAGCTATATGAAGACG
CGATTAGTTCCTGATTTGTGCAAGGAGATACACGTAATCATTCTGTATCT
TACTTAGCCGTCACATTAGTCATGAAAATCCAGCGCAGTTTTCTGTATAC
TCAAATGTTTCGGAGATGGTGATACTATATTATTTTGTCACATCATTTCT
TAGTGTCGATTTATTCGACATACTTGGCTGATTAACTAATATTAATGTTA
TTGTTATTGCCTTCTGACAACACTAATTCTTCTTCACTGCACTTAGTCTA
CATGAAGCAACACGAAGACCACGCGGTCTGTATGAATGAATCAGACTTGC
CAGCATATGCTTTTACTATTGATTATACGACTCAGGTCGGGGACGAGTCT
GGTCCATACTTCAAGATAGCGGTTTCGGCCGACGGAAACTCCGACATGGG
GTGCAGCGGATCCTTCACACTTGCACGTGAGAAAGATGAAAGAACATGCT
GAGGATGGTAGACAGCATGCTCGGTTTTCTACCTTAGGAATATTTCACCT
CTAAGGCTATGCGGGAACATCACGTGCGTTACTTCAACCCGGACTCGATG
CGTTGTGATGCTCGTGTGTTCTATTGAAAACAGTTGGCGCTTGCTTCACC
ATTTTCTTCCTTATTCTTTTTAACGTACCATCGCGTTATCTGTGAGCGCC
CAAGATGATCCCTTCGAAGTCGTTATCCGGGTGCTGAAGTTTCGTGTGCG
ATGGATGACTCCCACCGCCGGTATCAGGTATCTCGCCACCCAATATATGA
AGAACAGGAAAAATGGTAGGGCTGTGTATCGGTGCTGACACAAAATCGAT
ACATCGTACAGTGGTCCGAAAGATATATATTAATCGGTTGCCTTCCCGAT
ATATTGTTATATTTCCCGAAAAGTATGGTTCATTTTCCACTGTATGTACA
TCTGATGGAGTCATGCTTCAACAGCTGTAAGCACAACACAAACGACGTGG
CACAGGACAGTCCGCGACGTAGCGTCCCACACTCACAAGCTCCCGCCGAC
CTTTGGCGCGTCGATGACGTGGTGCCTTACACACTCTATTCTCGTTCTCG
TTCCCAGTAGCCCCGCGAACGATTTGCGAACTCACAGAGTGTTCTACTTT
TTAATATTGTTGTCGTGGAAGTTGTGCTTTTTCTCGAAAAAATATTCCGT
CAGGTCGAGTTCGGGCTGCCTCCAGAAGGTACTCGAGATCCTCGATTTTG
AAGAGAGATGAAGCCAAAATACATCATTTTTCTAGCTTCGGCGGTGCCTC
CGGGGAGGATCGCTCACCAGTCGGGGGGACGTTGGGGCTCACGCTAAAGC
GCTCGCTTGGTCGTGACTCACACACTCGCTTGGCATTCGCATGGCCGGCT
CGCTTCGCTCGCATCGGTCTATTACCGATACATCGGTAATAAATCGGTAT
GTCTGCTTCGCCGACCGACTAATGTATTTGTATGCTTTCAAGTGACCGGC
ATGCCCTGAAGAACAGCCTCTTGCTACACTAATCGTTTTCTCATTTGCAA
TCTCCCCGCCCAGCCGCATCTACTTCGGAACCTTCGGAACCTTCGGAACC
TTCAGAACCTTCGGGATGCTCAGATGACGACACAGATATGTTCTTGGACG
ACAGCACAACCTTTAGCGACGATGTAAACGATGATTTAGACTCCGTGACA
GACGAGGGTACAACGAGCAGCGTGGCTGCGATGATAGTGGCTTCTTGCGG
AGATTTGAACAGTATACCGTACCCCCTCGGTGGGGTCTTGAGGGTGAGTG
AAACAACCTTTTCTGAGTATAGTTTATCGGCTGATCTTAAGCTGTTTTTT
TTTGTATTGGTGTTTTTTGGGCGGACCGTCCCGCTTTCCCTTATGCATAT
TGGGGGCTGGCTTTATTTCCGTTTGCCTCCACTCATGAGGCAGAAAAATA
ATGTTTGTGATATGTTGTTTTGTTCTGTCGCTAACTTCGTCCTCGGAAAT
CCTTAACCGTCATCTGCTACTCTTGACTGAGGCGACGTGATTAACATCGA
GGTGCATCACCACAGAAGGCATATATACTGCTCCTGACTTTTGCCGTGCT
TGCTGCCATCCGTATTCGTTACCCTCCAGCGATCTATCCTTTCGAAAAGA
GTTATTTGTATTGCGGGCATTGGCCCATGTAAGACACTCAACAAAGAAGC
ACGAATACCGCTCGCCAACTTTCCCCTCTACTGCCTGTTGTGTTCCCTTA
CGAAAACGCTAACCCGAAACCAGGTGACCGTGGACGCTGACGAGATCACG
TGCCGTGACATCAAAACGCTGCGTCTAGGAGGAGGAGAGTTGCTTATTTC
CAGCGAGAATGGGGTGGGTAGGCGGTTTTTATCGCAGCTGTAGCCTCTCT
TTCGTGGGGGAAAGTCCTCACCTGTGACGGGGAAAGTTCGCAATCATTAA
CTTTCCGTTTTTACTACTATGGAGGCTTGTGCTGTGTAGACGCTCATGTG
GAACGCAACTTTTCATGAAAGCGCTTTTAGAATACTATAGCAGTACCTTA
GCAGTTGCCACGGCACGCGCTTTTGCGGTGTGTCTTGGAATAATCGGTAC
GTCCGATAATCGCTGCATTTCCAATCTATTATGACATCGAGCCACATTTC
TATTAATTTCTCTTCTCACCCAATTTTTCCAGGCCAACCCCCTGAATTTT
GTTCGTTTGTTGGTCAAATCAGCCATTACTCAGCAGTGTCAATTGCCTGG
GTGTACCTACAGTTTAGAACGGTTAATGTTGCCTTTATTATTATTATTTT
TTTTGTCTTTGAATATGTTTCAAACTGTATTCCCATGTTGTTGGCGATGC
TGTCCTGTTATTGGAACTGTCCTCAGCAAGGATCACACATCTTGAAGCTA
ACCCCCTCTCCCCCTCACACACATAGAAATGCAGACACGGTATTCCATGG
CTACTGAAGGGCATTTGCGAGCGTTCACCATCACTGTTGTTGTGTTCCGC
CAAGGAAACGTTGTATCTACATGCGGTGACTGATAGGTTTGGAAAAATCT
AGCTCATACCTTCGTCGCTTTTGCGCAGGTCGTGTTCAGTGGAGTGCGGT
TTGACGTGGAAAGTGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig8317:1727..6794+

>mRNA_H-paniculata_contig8317.16335.1 ID=mRNA_H-paniculata_contig8317.16335.1|Name=mRNA_H-paniculata_contig8317.16335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2370bp|location=Sequence derived from alignment at H-paniculata_contig8317:1727..6794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGAATCCTCTACGGCTACCGCATATGCTTCGGCTTCGGCGTCTGCCAG
TAGTACCACAGGCGGAGAAAATCAAGTTGCTTCGTCTTCAGTTTCTGCTA
CTTTTACCAGCCCGGTCGAAATTAGTTACACTTCGACGACTTCGGAGGGT
GATGATAATAATGGGAGTAGCTCCAGTAGCAGTTCCTCCCATGAAGGCGA
ACCAACAAGCGACTACTCTCAGGATGATATTGACGATGATTTCGAAGACG
ATGATGTCGAAGACGATGATAATGATGCAACAGATGATGACAGCGAGAGC
AATGGCGGTGATGATGATGATGGTGAGGAGTATGATACAGATGACGATAT
GGAAGTAACGGGTGGATCTTCGTGGACGGTTACGGGATCTGACGACGACA
GTAGAGAGGATATCAGCACTTCGGATAGCAGCGATTCAGATAGCAGCAAT
TCGGGTAGTTCTGATGATGACTCTGACAGCAGCACGGAGATGGCCTCTTC
GATACACGTGTTGACACCAAACCAGGATGACGTGCTTACTTCCGGCAGTG
ATTACAAGGTTGAATCCTCTACGGCTACCGCATATGCTTCGGCTTCGGCG
TCTGCCAGTAGTACCACAGGCGGAGAAAATCAAGTTGCTTCGTCTTCAGT
TTCTGCTACTTTTACCAGCCCGGTCGAAATTAGTTACACTTCGACGACTT
CGGAGGGTGATGATAATAATGGGAGTAGCTCCAGTAGCAGTTCCTCCCAT
GAAGGCGAACCAACAAGCGACTACTCTCAGGATGATATTGACGATGATTT
CGAAGACGATGATGTCGAAGACGATGATAATGATGCAACAGATGATGACA
GCGAGAGCAATGGCGGTGATGATGATGATGGTGAGGAGTATGATACAGAT
GACGATATGGAAGTAACGGGTGGATCTTCGTGGACGGTTACGGGATCTGA
CGACGACAGTAGAGAGGATATCAGCACTTCGGATAGCAGCGATTCAGATA
GCAGCAATTCGGGTAGTTCTGATGATGACTCTGACAGCAGCACGGAGATG
GCCTCTTCGATACACGTGTTGACACCAAACCAGGATGACGTGCTTACTTC
CGGCAGTGATTACAAGGTCTCGTGGGAATACGTGGGCAGTCATGCTGAAG
ACACGGAAATATTTCACATAGACGTATACAACTGTGGAGGCGACTCAGAT
TGTGCGGGAGATTGTGGGGATTTTTTGGCGCCGTTATGCGAGGAGCAGGG
TTGTTTTGCCATCGACGGGAGCAACACCATTTCCTTGCCCGAGGTCTCGT
GGGAATACGTGGGCAGTCATGCTGAAGACACGGAAATATTTCACATAGAC
GTATACAACTGTGGAGGCGACTCAGATTGTGCGGGAGATTGTGGGGATTT
TTTGGCGCCGTTATGCGAGGAGCAGGGTTGTTTTGCCATCGACGGGAGCA
ACACCATTTCCTTGCCCGAGGTCGGGGACGAGTCTGGTCCATACTTCAAG
ATAGCGGTTTCGGCCGACGGAAACTCCGACATGGGGTGCAGCGGATCCTT
CACACTTGCACGTCGGGGACGAGTCTGGTCCATACTTCAAGATAGCGGTT
TCGGCCGACGGAAACTCCGACATGGGGTGCAGCGGATCCTTCACACTTGC
ACCCGCATCTACTTCGGAACCTTCGGAACCTTCGGAACCTTCAGAACCTT
CGGGATGCTCAGATGACGACACAGATATGTTCTTGGACGACAGCACAACC
TTTAGCGACGATGTAAACGATGATTTAGACTCCGTGACAGACGAGGGTAC
AACGAGCAGCGTGGCTGCGATGATAGTGGCTTCTTGCGGAGATTTGAACA
GTATACCGTACCCCCTCGGTGGGGTCTTGAGGCCGCATCTACTTCGGAAC
CTTCGGAACCTTCGGAACCTTCAGAACCTTCGGGATGCTCAGATGACGAC
ACAGATATGTTCTTGGACGACAGCACAACCTTTAGCGACGATGTAAACGA
TGATTTAGACTCCGTGACAGACGAGGGTACAACGAGCAGCGTGGCTGCGA
TGATAGTGGCTTCTTGCGGAGATTTGAACAGTATACCGTACCCCCTCGGT
GGGGTCTTGAGGGTGACCGTGGACGCTGACGAGATCACGTGCCGTGACAT
CAAAACGCTGCGTCTAGGAGGAGGAGAGTTGCTTATTTCCAGCGAGAATG
GGGTGACCGTGGACGCTGACGAGATCACGTGCCGTGACATCAAAACGCTG
CGTCTAGGAGGAGGAGAGTTGCTTATTTCCAGCGAGAATGGGGTCGTGTT
CAGTGGAGTGCGGTTTGACGTGGAAAGTGGCGTCGTGTTCAGTGGAGTGC
GGTTTGACGTGGAAAGTGGC
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