mRNA_H-paniculata_contig8314.16334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8314.16334.1
Unique NamemRNA_H-paniculata_contig8314.16334.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: D7G0M6_ECTSI (Nucleoporin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 4.640e-117
Identity = 184/245 (75.10%), Postives = 212/245 (86.53%), Query Frame = 1 
Query:    1 QIRPTSFAMLPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNYHNQDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTT-SCRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVSYGFMYSVFFVGDATGARKCKRVRHRSSGASPSPMHAMYALLGMRSAQRTLADVVVDPLRNVLYTLDLEGNMDLFDLGVDGNQTTQK 732
            QI+P SFAMLP  L+RERD VECMTFMGLLPEIDHAWMTVDNVL+LWNYH QDFTQ+RELEQVIVTVALVPPK+GVF + V+HVLAVATTVEV+LLAVT+  + + T S RNRRIQVR TNFRA+TDGVSMLKIA HPNGRVFMAGKDGN+YEL+YSV+YGF YSVF VG    +R+C R+ H+SS   P P+++M+ALLG+R A+R L +VVVDPLRNVLYTLDL G++DLFDLG DGN TTQK
Sbjct:   64 QIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAERVLVEVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQK 308
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BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: A0A7R9YE90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE90_9STRA)

HSP 1 Score: 179 bits (454), Expect = 7.510e-48
Identity = 99/243 (40.74%), Postives = 152/243 (62.55%), Query Frame = 1 
Query:   28 LPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNYH------NQDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTTSCR-----NRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVSYGFMYSVFFVGDATGARKCKRVRHRSSGASPSPMHAMYA--LLGMRSAQRTLADVVVDPLRNVLYTLDLEGNMDLFDLGVDGN 717
            +P  L  +   ++CM+FMGLLPEI  AW+++DN LFLWNY       + DF ++  L+Q+IV+VALVPP+ GVF+E VK++LAVAT VE+VLLAV F+    T         N  + +RPT+F  ++D V+M+K+ G  +GR+FM G DG++YE  Y+    F   +  +G     RKC+++ H     S SP+ ++    L  + +  + L DVVVD +R +LY L  + +++ +DLGV+G+
Sbjct:   31 VPPALTEQYRSLKCMSFMGLLPEISCAWLSIDNKLFLWNYERARYQTDADFLEFDGLDQIIVSVALVPPRPGVFREKVKYLLAVATAVEIVLLAVAFEEPEGTGVLGQPLGLNGTMTLRPTSFSVSSDNVTMMKLCGTNSGRIFMGGSDGSLYEALYANEEEFALGLG-LGFGMAGRKCRKLNH-----SASPLSSLVPGFLKQLSAPSKPLVDVVVDDVRQILYALREDNSLEGYDLGVNGD 267
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BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: L8HDY8_ACACA (Nucleoporin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDY8_ACACA)

HSP 1 Score: 174 bits (440), Expect = 5.850e-46
Identity = 92/238 (38.66%), Postives = 135/238 (56.72%), Query Frame = 1 
Query:    1 QIRPTSFAMLPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNYHNQDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTTSCRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVSYGFMYSVFFVGDATGARKCKRVRHRSSGASPSPMHAMYALLGMRSAQRTLADVVVDPLRNVLYTLDLEGNMDLFDLGVDG 714
            Q R      LP  L +    +EC  F+GL PEI+ AW+TVDN L LWNY ++++  + + +Q+IV+V L+PPKR VF E VK+VL +AT VE+VLLAV F+  +         I + PT    + D V+M+KI G   GR+FM G DG++YEL Y    G+            +++ +++ H            M AL    SA+  + D+V+D  RN+LYTL   G ++++DLG DG
Sbjct:   87 QFRLLKMIPLPETLHQMYKSIECKCFLGLFPEINRAWITVDNQLCLWNYESKEYAIWTDQDQIIVSVGLIPPKRDVFSEDVKYVLVLATPVEIVLLAVWFEDNTP-----QGEIHLEPTRIALSADNVNMVKIVGTKRGRIFMGGSDGSLYELEYQADEGWF-----------SKRARKINHTRG--------IMSALTSYWSAKPAIIDIVIDESRNILYTLSARGAIEVYDLGTDG 300
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BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: A0A7S3A661_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A661_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 6.000e-43
Identity = 92/229 (40.17%), Postives = 132/229 (57.64%), Query Frame = 1 
Query:   28 LPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNYHN-QDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTTSCRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVSYGFMYSVFFVGDATGARKCKRVRHRSSGAS---PSPMHAMYALLGMRSAQRTLADVVVDPLRNVLYTLDLEGNMDLFDL 702
            LP  L  +  H+EC +FMG+ PEI  AW TVDN LFLWNY    DF  +  ++Q+I + A+V P+ GVF E VK++LAV+TTVEV+LL V F G S T+      I + PT     TD V+MLK+ G    R+FMAG+DG ++EL+Y       +S+       G+RK +++ H  S  S   PS +   +      S    L D+ VD  R++L+ L   GN+ ++D+
Sbjct:   47 LPKALFEQYSHLECKSFMGIFPEIHRAWFTVDNRLFLWNYATGSDFYPFEGIDQIITSAAIVEPRPGVFVEDVKYLLAVSTTVEVMLLGVCFSGPSVTSE-----ITLVPTQISVITDNVAMLKLVGSRGRRLFMAGRDGCLHELTYQGETNSFWSL-------GSRKARKLNHSKSAFSSLIPSSVRLFF------SGDDPLIDLAVDDNRDLLFALSEYGNVTVYDI 257
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BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: A0A835YRU3_9STRA (Nup133 N terminal like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU3_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.300e-42
Identity = 88/183 (48.09%), Postives = 125/183 (68.31%), Query Frame = 1 
Query:   28 LPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNYHN--QDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTTSCRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSV--SYGFMYSVFFVGDATGARKCKRVRHRSSGAS 564
            LPA L   +  ++  TFMGLLPE++HAW++VDN L LWNY +      +++ELEQVIV V L  P++GVF+  VK++L VAT VEVVL+AVT  G+         R+ VRPT F A++DGV+M  I GHP GR+FMAGKDGN+YEL Y    + G++ S   +G ++G+RKC+++   ++ +S
Sbjct:   76 LPAELLDLQQRMQVATFMGLLPELNHAWLSVDNALLLWNYVDGADVVKKFQELEQVIVAVGLAVPRQGVFKPLVKYLLVVATPVEVVLVAVTDGGDG--------RLDVRPTQFSASSDGVNMNAIRGHPCGRIFMAGKDGNLYELIYEAGGATGWL-SYVGLGGSSGSRKCRKINRSTTPSS 249
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BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: A0A7S3ELT5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ELT5_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 7.010e-42
Identity = 92/229 (40.17%), Postives = 132/229 (57.64%), Query Frame = 1 
Query:   28 LPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNYHN-QDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTTSCRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVSYGFMYSVFFVGDATGARKCKRVRHRSSGAS---PSPMHAMYALLGMRSAQRTLADVVVDPLRNVLYTLDLEGNMDLFDL 702
            LP  L  +  H+EC +FMG+ PEI  AW TVDN LFLWNY    DF  +  ++Q+I + A+V P+ GVF E VK++LAV+TTVEV+LL V F G S T+      I + PT     TD V+MLK+ G    R+FMAG+DG ++EL+Y       +S+       G+RK +++ H  S  S   PS +   +      S    L D+ VD  R++L+ L   GN+ ++D+
Sbjct:   47 LPKALFEQYSHLECKSFMGIFPEIHRAWFTVDNRLFLWNYATGSDFYPFEGIDQIITSAAIVEPRPGVFVEDVKYLLAVSTTVEVMLLGVCFSGPSVTSE-----ITLVPTQISVITDNVAMLKLVGSRGRRLFMAGRDGCLHELTYQGETNSFWSL-------GSRKARKLNHSKSAFSSLIPSSVRLFF------SGDDPLIDLAVDDNRDLLFALSEYGNVTVYDI 257
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BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: A0A7S1C2I9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2I9_9STRA)

HSP 1 Score: 153 bits (386), Expect = 8.390e-41
Identity = 100/233 (42.92%), Postives = 136/233 (58.37%), Query Frame = 1 
Query:   25 MLPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNY-HNQDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTTSCRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVSYGFMYSVFFVGDATGARKCKRVRHRSSGASPSPMHAMYALLGMRSAQ--RTLADVVVDPLRNVLYTLDLEGNMDLFDLGVDG 714
            M P P A  R H E    MGLLPEI  A++T DN L+LW++ H +DFT Y  L+QVI++V LV P   V Q  ++++L VATTVEVVLL V+F+ E    S    R+ + P      TD VSML +AG   GR+FMAG DG +YEL+Y    G    +  +G + GA KC++  H ++           AL+G   A   + L  V VD  RN++YTL  +G ++L+DLG DG
Sbjct:   78 MHPLPAALARKHAEVHATMGLLPEISRAYVTFDNKLYLWHFDHAEDFTAYERLDQVILSVGLVMPT-PVVQGYIEYLLVVATTVEVVLLGVSFEREDDPHS----RMTLTPLRLTFPTDNVSMLAVAGTSAGRIFMAGGDGCLYELTYEDDRGGWRDM--LGWSRGA-KCRKFNHTTTHIG----RVARALVGSLLANPGQPLIAVEVDHYRNLMYTLAQDGTIELYDLGEDG 298
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BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: A0A7S0BDF8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BDF8_9RHOD)

HSP 1 Score: 157 bits (397), Expect = 3.090e-40
Identity = 91/229 (39.74%), Postives = 131/229 (57.21%), Query Frame = 1 
Query:   28 LPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNYHN-QDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTTSCRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVSYGFMYSVFFVGDATGARKCKRVRHRSSGAS---PSPMHAMYALLGMRSAQRTLADVVVDPLRNVLYTLDLEGNMDLFDL 702
            LP  L  +  H+EC +FMG+ PEI  AW TVDN LFLWNY    DF  +  ++Q+I + A+V P+ GVF E VK++LAV+TTVEV+LL V F G S T+      I + PT     TD VSML + G    R+FMAG+DG ++EL+Y       +S+       G+RK +++ H  S  S   PS +   +      S    L D+ VD  R++L+ L   G++ ++D+
Sbjct:   47 LPKALFEQYSHLECKSFMGIFPEIHRAWFTVDNRLFLWNYATGSDFYPFEGIDQIITSAAIVEPRPGVFVEDVKYLLAVSTTVEVMLLGVCFSGPSVTSE-----ITLVPTQISVNTDNVSMLMLVGSRGRRLFMAGRDGCLHELTYQGESNSFWSL-------GSRKARKLNHSKSAFSSLIPSSVRLFF------SGDDPLIDLAVDDNRDLLFALSEHGSVSVYDI 257
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BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: A0A1B6CAW0_9HEMI (Nucleoporin_N domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CAW0_9HEMI)

HSP 1 Score: 155 bits (393), Expect = 1.010e-39
Identity = 82/247 (33.20%), Postives = 138/247 (55.87%), Query Frame = 1 
Query:    1 QIRPTSFAMLPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNYHN-QDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTTSCRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVSYGFMYSVFFVGDATGARKCKRVRHRSSGAS---PSPMHAMYALLGMRSAQRTLADVVVDPLRNVLYTLDLEGNMDLFDLGVDGNQTTQ 729
            Q+R  +   LP  +     H++C   MG+  EI+ AW+T+D+ +++WNY N  D   Y  L + I++V LV PK GVFQ  ++H+L + TTVE+V+L V F   ++     N     +   +   TDGV +  I G  NGR+F+ GKDG+++E+ Y V  G+             ++CK+V H +   S   PS ++A +      S + ++  + +D  R++LYTL  +G +++FDLG +G +T++
Sbjct:   79 QVRSMNKIPLPPEIMEHFGHMQCSCMMGIFSEINRAWLTIDSDIYIWNYENGSDVAYYDGLSETILSVGLVKPKPGVFQNCIRHLLVLTTTVEIVVLGVIFSSSNEANRTYNELNLTQEIIYTLTTDGVPINVITGTDNGRIFLGGKDGSLFEIMYQVEIGWW-----------GKRCKKVNHSTGTLSFLVPSFINAAF------SEEDSIIQISIDNSRHILYTLSEKGTIEVFDLGENGTKTSR 308
[Close]
BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Match: A0A6A5C0M1_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C0M1_NAEFO)

HSP 1 Score: 152 bits (385), Expect = 1.330e-38
Identity = 90/251 (35.86%), Postives = 133/251 (52.99%), Query Frame = 1 
Query:   19 FAMLPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNY-HNQDFTQYRELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGES------------------KTTSCRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVSYGFMYSVFFVGDATGARKCKRVRHRSSGASPSPMHAMYALLGMRSAQRTLADVVVDPLRNVLYTLDLEGNMDLFDLGVDG 714
            F  LP P+  E   +E   +MG+ PEI  AW+T+DN  F+W+Y    DF +Y EL+QVI++  LV PK GVF++ VK++L +AT VEV L+A+TF   +                    T      +++  TN+   +D V+M+KI G  NGR+FM GKDG +YEL+Y    G+  S           KC+++ H     S S +  +       +    + D+VVD  RN LYTL     ++++DLG DG
Sbjct:   79 FVALPDPIFEEYRRLEYKCYMGIFPEIHRAWITIDNKFFIWSYLDGSDFNEYDELDQVIISAGLVKPKPGVFKDYVKYLLVLATPVEVALVALTFNNNNVASPSGAAHLDQQHLTFDSQTGAIYSEMELFATNYIIPSDNVNMIKIVGTQNGRIFMCGKDGCLYELTYEPEEGWFKS-----------KCRKLNH-----SQSFVGILVPAFLKFTHDDPIIDIVVDDTRNFLYTLSENMTIEVYDLGRDG 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8314.16334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0M6_ECTSI4.640e-11775.10Nucleoporin_N domain-containing protein n=1 Tax=Ec... [more]
A0A7R9YE90_9STRA7.510e-4840.74Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
L8HDY8_ACACA5.850e-4638.66Nucleoporin, putative n=1 Tax=Acanthamoeba castell... [more]
A0A7S3A661_9RHOD6.000e-4340.17Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A835YRU3_9STRA3.300e-4248.09Nup133 N terminal like-domain-containing protein n... [more]
A0A7S3ELT5_9RHOD7.010e-4240.17Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S1C2I9_9STRA8.390e-4142.92Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0BDF8_9RHOD3.090e-4039.74Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A1B6CAW0_9HEMI1.010e-3933.20Nucleoporin_N domain-containing protein (Fragment)... [more]
A0A6A5C0M1_NAEFO1.330e-3835.86Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8314contigH-paniculata_contig8314:4150..10444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.6
Seed ortholog evalue6.9e-98
Seed eggNOG ortholog2880.D7G0M6
Preferred nameNUP155
KEGG koko:K14312
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000972,GO:0001508,GO:0001555,GO:0001654,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003674,GO:0003682,GO:0005198,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005886,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006936,GO:0006941,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007015,GO:0007017,GO:0007049,GO:0007051,GO:0007053,GO:0007088,GO:0007096,GO:0007140,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007295,GO:0007300,GO:0007303,GO:0007346,GO:0007423,GO:0007444,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009506,GO:0009507,GO:0009536,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0009994,GO:0010256,GO:0010467,GO:0010564,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016049,GO:0016482,GO:0017038,GO:0017056,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030029,GO:0030036,GO:0030048,GO:0030054,GO:0030154,GO:0030715,GO:0030717,GO:0031090,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035220,GO:0035295,GO:0035637,GO:0036228,GO:0040007,GO:0042127,GO:0042306,GO:0042307,GO:0042391,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043902,GO:0044057,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044611,GO:0044703,GO:0045184,GO:0045477,GO:0045595,GO:0046822,GO:0046824,GO:0046907,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051276,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051783,GO:0055044,GO:0055049,GO:0055050,GO:0060047,GO:0060048,GO:0060284,GO:0060341,GO:0060429,GO:0061024,GO:0061337,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070201,GO:0070252,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072657,GO:0086001,GO:0086002,GO:0086003,GO:0086014,GO:0086019,GO:0086026,GO:0086065,GO:0086066,GO:0090087,GO:0090306,GO:0090316,GO:0090435,GO:0097435,GO:0140013,GO:1900180,GO:1900182,GO:1901987,GO:1901990,GO:1903046,GO:1903522,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904748,GO:1904951,GO:1905475,GO:1905879,GO:1905936,GO:1905938,GO:2000241,GO:2000243
EggNOG free text desc.protein localization to nuclear inner membrane
EggNOG OGsCOG5308@1,KOG1900@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons4
Model size732
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8314.16334.1prot_H-paniculata_contig8314.16334.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8314 4150..10420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.159567-CDS-H-paniculata_contig8314:4149..43331622931044.159567-CDS-H-paniculata_contig8314:4149..4333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8314 4150..4333 -
1691481564.1030686-CDS-H-paniculata_contig8314:4149..43331691481564.1030686-CDS-H-paniculata_contig8314:4149..4333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8314 4150..4333 -
1622931044.1747227-CDS-H-paniculata_contig8314:6419..66221622931044.1747227-CDS-H-paniculata_contig8314:6419..6622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8314 6420..6622 -
1691481564.117233-CDS-H-paniculata_contig8314:6419..66221691481564.117233-CDS-H-paniculata_contig8314:6419..6622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8314 6420..6622 -
1622931044.2234278-CDS-H-paniculata_contig8314:7976..81351622931044.2234278-CDS-H-paniculata_contig8314:7976..8135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8314 7977..8135 -
1691481564.1356966-CDS-H-paniculata_contig8314:7976..81351691481564.1356966-CDS-H-paniculata_contig8314:7976..8135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8314 7977..8135 -
1622931044.240152-CDS-H-paniculata_contig8314:10258..104201622931044.240152-CDS-H-paniculata_contig8314:10258..10420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8314 10259..10420 -
1691481564.1460586-CDS-H-paniculata_contig8314:10258..104201691481564.1460586-CDS-H-paniculata_contig8314:10258..10420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8314 10259..10420 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.2538383-UTR-H-paniculata_contig8314:10420..104441622931044.2538383-UTR-H-paniculata_contig8314:10420..10444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8314 10421..10444 -
1691481564.1557581-UTR-H-paniculata_contig8314:10420..104441691481564.1557581-UTR-H-paniculata_contig8314:10420..10444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8314 10421..10444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8314.16334.1

>prot_H-paniculata_contig8314.16334.1 ID=prot_H-paniculata_contig8314.16334.1|Name=mRNA_H-paniculata_contig8314.16334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MLPAPLARERDHVECMTFMGLLPEIDHAWMTVDNVLFLWNYHNQDFTQYR
ELEQVIVTVALVPPKRGVFQESVKHVLAVATTVEVVLLAVTFQGESKTTS
CRNRRIQVRPTNFRAATDGVSMLKIAGHPNGRVFMAGKDGNMYELSYSVS
YGFMYSVFFVGDATGARKCKRVRHRSSGASPSPMHAMYALLGMRSAQRTL
ADVVVDPLRNVLYTLDLEGNMDLFDLGVDGNQTTQK
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mRNA from alignment at H-paniculata_contig8314:4150..10444-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8314.16334.1 ID=mRNA_H-paniculata_contig8314.16334.1|Name=mRNA_H-paniculata_contig8314.16334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6295bp|location=Sequence derived from alignment at H-paniculata_contig8314:4150..10444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATTCGCCCCACGTCCTTCGCGATGCTCCCGGCGCCACTTGCCCGCGA
GCGGGATCACGTGGAGTGCATGACATTTATGGGTTTGCTACCGGAGATCG
ATCACGCTTGGATGACGGTGGATAACGTACTGTTTCTCTGGAACTATCAC
AACCAGGATTTCACTCAGTACCGAGAACTGGAACAGGTAACATATAGATG
CGTATGTATGTGTGAGTAGGTAGGTAAGTATGTTTGGCAACTGACACATG
GGAGGATAGTGATTTAGGGGAAGCTACGTGGATTTCTACTTTCTCTATGC
TGGGTTTTAGGCGACCATGCTGCGTTTCACATGGGTAATACTAGCGACTA
CTCACCATCTCTTGAGTCGTCGCGCCAAACGGATTTTGCCATGGGTTGTG
GGCTTCCTGAGTATCCAAATGTTGCGTAATTGGCAGGGCTGATGTTTATA
CCTCAAGTGTTGCGTGGGGCTTCAATCGTCGTGGGAACCAATAAACAATG
TAGCGCCACACACAGCGAACGAATCGCTTTTAGTGTGTGAATACCTGTGG
GACATAATCTGCTGATGTACTCCTGATGGAATATGGTCATCTTATGAGTA
TGTTTGCTCTAGGGCGTTACAACTAGCAGTTCAGCAGACGTCGTATAGGA
GTATATACTCTTCGACCGAGGTCATCGAAACCTCACAGGATTGCACATGA
ATTTCCCCGTGCCCTATTTACAAGAGCCAACCTCAACGAGGGGGGGGGGG
TGCTATCCTCCGTGTCATGAATAATAACTACATACAAGATAGAAACTGTA
CATTACGTGTTGTCACCACGGGTGGTGTCCGGGATGGAGGGCGGGGTATT
CATAGTCAGTTGAACTGTAACTCTGAGCCTTAGATAATGACTCCGTTGTA
CCCATGTTCAGGTTATGCAGTTGTGTAATGACACTTATCAGCAAAATTAA
GTCAAAAAGGGAAATTCCGGCATGGTATCTGTATTGAATAACGCTTCAAC
CCCCGGATGCAGTTTCGAAAAAAAAAAAATGGTATCATTTAACAGTAAAT
ATCGATCGCTTGCGTCGTTGTGGGCAAAACCATACCAAACCAAGTGTCAT
TGTTCTATTAAAGGAAATGTAGACATGTTTGGGCGAATGTCTGAATGTGT
AAGCAGCGGAAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAAACAG
ACAAACCAAGTGTCAATGCGTATATAGAGGTATGCTTCCTGTACTGAGCA
TATTTATGGAAAGCGGTGGCCCCGTAGCCTTATAGTCATCATGTCATATC
CCATATGCGTCGTTTTCCAAACACCTTTGAGGTGATGGGGAAATTAGGCT
GGGATTGATTCGATGGGGTCCGAGGGAAAAAGCGTTTACGCCGTGGACAA
CGAATTAGTTGATTAGAAATCACTTGATTTTAGTGTACTCGAGTCAACTT
TAGTCATAGCTATCAAGTCACCTGTTCTTAGCTTTTCTCTCGACTGAAAG
CGTTAACACGCTAACGTGAAGATGGTTATTGATGAGAATTATGATGGTGA
TAACAGTCACGGCAGGAGGGGGTCTGAATGGAGTATATCATTGGTCTGTT
TACAAGTAGCGGGAGAGGGCCGGCCTGAGGTCGCCGGTCCACACCGGCCA
AGCACCAGTTATACCCGGTAAATTGTGCACCCCCTGGAGAATGACGGATC
GATATTTCTAAAACTTCGACACGAAAATTAACAGACTCTTGGCCTGAGTT
TCAGAATGAGCGGACACATAGAATAAAGTACCCACCCCTGTCCATTCGAT
TTACGAGTAGTATTAATAGTCGTGGATGGTCCGAGGCACATAGAACACAC
GAACTCATTCTGAAACTCAGGCGAATACTTTTTTTTTACTTTCGTTGCTA
ATACGCGAAGTATTCGTAGTTGTCCAGAGGGTGAAATTATTCCCCCCCCC
CTGGAGAATGACGAATACCATATTTCGAGCATTCGTGACGAAAAAGAACA
AAATATTTGCCTGAGTTTTAGAATGTGCGGGCACATACATGAAAATATAG
CGTTTGAACACCTGTTCATTCGTTTTACTGTTATTCGGAGCAGTCCTACG
TAAAGTAGATGGGCGGGGGGCTACAGATAAAACAAACGTTCTCATGCTGA
ACCAAACCTTGAAGCGAATGTATAGTTCGTCACGAATGCTCCAAGTGTTT
GTATTTTGTCCGAGGGATGAAGGTGTGCTATTTTGTTCGCATCCTTCTTA
TTGCCGCCACGTCGGTTATCTAAGCCGCTTTGTCTTGGCCGTGTGAACAA
TCTGGACAGGTGATTGTGACGGTGGCACTGGTGCCGCCCAAGCGGGGGGT
ATTTCAAGAGTCTGTCAAGCATGTGCTGGCGGTGGCAACAACGGTGGAGG
TGGTGCTGCTTGCCGTAACGTTTCAGGGGGAGTCGAAGACGACGAGCTGC
CGGAACCGCCGGATTCAGGTGATGAAATCCGTCACCAGTCATATTCCAAT
TATTTGGTATGATACTGATTGCAGTGGTGGTGGTGGTGTGGCAGTTGTGA
TGGTGATGATGTTATTCTCGGAATAGGTTTTCGTAAAGTGGCGGTTGTCA
CAAGAGCCAAAAATCGCTGTGGTCGATCATAAAATCAAGATGTAGGATGG
ACTGGGAAAAAGCAAGGAACACTCTTACAGTCTCTCCCGGAATCTGTCAA
TGCTGGGAAAATTTCATCTAATTCGAACTGGGAACGGGGCCAAACATCGA
ACAAACGGATATTTTGGAGTTTCTGAGCTTCCCCCCCCCCCCCCCCCTCC
ACCCTTTCATCTGCGAGTCAAGGGTTAGTTTCAATTTTTCGGAACATATT
GCTATATTTTCTAATTTGACTTCTTATCTTCGTCGAAATTGCGCGCGGAC
TTGGTCTGCGATTCCCATCCAAACTGTTGATTACCCTCTAACCCTTGCAC
CAGCCCTTGGCATTTTCGGAATCGGAACTCCGTTGTCACGCCGCGGAGCA
ACAGCGACGAGCCCGCAGCTCGGTTCGTTAGCGGGGGTCGGGCAGGTCCG
AGCAGTACAACACAAAACTGCGTCGAACAAATTGACCACTTTCTGGTGAC
TAACTGGGACAAGCGTTCAACGGTCTCTACCAGGCAATACCTTCCCAAAC
ATGAGGTCTCTCCAATGGTGCTGTAGAGACATATGCGCACTGGCAGATGG
AATCAAAAACAGAGTCACCGAATTTCTCACTGCTATCGATTGGAAAACTG
TAACTGTAGGTGACCCGATGTTTATCCGGCCGGTGCCTCCCCCCTTATGG
ATGACTTTGCGTCGGTTATGAAAACCTAGAAGCGGTTCGCCGATTTACTC
ACTCTACTGCCGATTAAAAAACCGTTGGTATATCGTTTATTTGTTTTTTC
TGGCCGGGGCACCCTCCTATAAATACTTGCGTGCCGGCTATAAAAATGGA
GAACCGGGTCGAGATATGCTCACTATGCTGCCGATTAAAAAAAGGTCGGT
GGTTCGGTGTTTTTACGGCCGGTGCGCCCACTCCTTTAGATGAGTGCGCT
TCGTCTACGAAAATCGAGGACCGTATCATCGATTTGCTCACTCTGTCGCC
GGTTGGGAAACCGTTGGCGTATCGCTTTTGTTCTAGCCGGTGCCACGTTT
TTTAGATGCGTGCGCGCCGGCTTTGAAAAGCGAGAATAGGATGGCCGATT
TGCTCACTATGCTGCCGGTTAAAAAGCTGTTGGTGACCCGGGTTGTTTTG
GCCAATGAGGCATCCCTATTTTACTCCAATAAAACGTCTTTTTTTTCTTT
TCTTTTTTCCTGGTTGTTACAGGTTAGACCAACTAATTTCCGCGCGGCGA
CGGATGGAGTGTCGATGCTGAAGATCGCAGGCCATCCCAATGGTAGAGTG
TTCATGGCTGGCAAGGACGGCAACATGTACGAGCTATCCTACTCTGTCTC
CTACGGGTTCATGTACTCGGTGTTTTTCGTGGGGGATGCTACGGGCGCCC
GGAAGTGTAAGAGAGTGAGGCACAGGTGCGAACGCCTGATCAGTCGTTTA
TAGAGTGTAACACTTATGGCGAGGAATACTACCACCACCCCTCAAAGGAT
GTGGAGTATGATGAGTAGCAAAATTGTAGTGTATGTACTGTCATGGTCCA
ACCCGCCTCGACAGGTACGGTGAAATGATGTTTATTGTCGGAGCCATTTT
TTTTTTTTTTTTGTCAGCGAAACAATCTCCGCCGTAGAAAGGATTGAATA
GGACCGCGTTAACACCCTCGAAGATTTTTTTGTAAAAATCAAGCCCAAGT
GTCAGTCAATCATGTGCATGAATTACCTGGCCAGGATAGAACTGTGCACG
CAAAAAGTTCCCTGGCGAGATCCGGGGGGGGGGGGAGGGGGGGAGAGCAC
TAGCTCGTTAAGGGGATAAAAACAAAAAAAAAGCACGAATGAATCACTGT
TCTTTTAAGCGAAGGGTTCTAAATGCTATATATATATATGTGTGTGTGTC
GACGAGTCAATTGCATGCCCTTTTCAGTGGAGAACGAATCAACTTCATAT
GATCACCTATATTAGTCTTTCCCAGTCGATTACACGATAGAACATGCCCT
CAAAAACAATTCTCAGAAAACATCAAGAATCGAAGCGTGAGCCCTTTTAA
GGGTTACATGGGGAGTATAGTGGCGGAAGTAACTTCGAAAAAGTGTCTTT
GTCATTCATAGCTTCTGATGGCGTTGGCGAAAAATATCGAAAAATATCGA
AAAAATTGTTTGGAAACTTGGTGAAGAAAATAATAACTCTGGATTCGAAA
TTTTATCCCCACGTATTTAGAAATTTCTTTCAGGAGTATTCCATAGAGGC
GTTACTTGTTGTTTCTTGTGGGAAAATGAAGTACAACAGCTTGTTTTAGG
GATACCGGGGTTTTTGTATATTTTTGAAAGCAAGGACGCCGTATACATCG
ATTGTATTGTATATCATCACCATGTGAATATATTTCTTGCAATTATCGTC
ATGCAAATTATTTGATGTACATCGCTCCATTTACAAGGCGAGGTTTTGCG
TCGTGTTTACCCTGAAGTTATATGCTGCAGACGGCGATGTGGAGAGGTCA
TGCGATGATGATAAGTGTACTCTTGGATAATGACAATTGTATGCGTCGTA
TGAAAAAACGTGCCACACTGACACTTCCATCTATTTTGTTTTTTTTAAAC
CTCGGGCGGCCGGGAGTTAGTTATAACCCGTGCGAGGTATCGTTCAAAAG
ATGACATCACGGGCCTACCAAATCTGCTCTCAAATTATGGGACATTCTCG
GTGTTGAGAACCGAGCGATTTTTTTTTTTTTTTTTCAAAAAATATTAATT
GACCTCTTGGGTTTCACAGGGTCAAATTGTGATAGAAAGCTGGTTATGAG
AGCTTGCAGCTTGCAACCGATGTAGGTTTCCTCCCGACCCCGCAGAGGAA
CAAATAACTATGTTCTGTAAAAGGAAATGTAGACGTACTTCGGTATGGAA
TCATCGGGTAGAGGTTTTTGCCTTAGCCTTCCGGGTGTTAAAAAAAAAGA
AAAAAGGTGTCCCCAGGGAGTCGTTGCCCTAAGAAGATAAAAAATCGAAA
CATTCATCTGCATAGAAGTGACTTCCGCCACTTTGCCCGTGGTACAGTTT
TTTTGTCAGGAATTATGTTACGATTGATACAAGATATAGTATTTATTATA
GTTACTCCCCCGCCCCCCACTCGCTTCCCTCCTAATATGTTTTTTTTGCC
GATAAGTTATCATTCAGCAGCAATCGAAGCGCTGAGAATACCCGCGGTTT
ATTTGACGGTTATACCGCGGATTTTGTTTATATATCAACAGTGTACATTC
TTGTATATGTATATTCACTGTAAATTGAATCTTTCCCGAAACGTTTTATG
TCTAACGTGTAGATGGTGCGCTGTCCTGCTGGTGAAGTCGCCGTTCTTGG
CAGTTTGGCGTGAGTGTGGCGTGCACATTTGTTGCTCCTGCGGGAAAGTG
CGCTTCTTTGTACTCTTGTCGTCAGCTTGGTATCAGGTACCCGGTACACA
TGTATATTGCATGAAAAAAACGATTGCCTTACCCCTTCTCAATCGTTGAA
TGGATTCTCAGATCAAGCGGTGCTTCCCCGTCACCAATGCACGCGATGTA
CGCCTTGCTCGGGATGCGGAGCGCGCAGCGCACGTTGGCTGATGTGGTCG
TTGATCCGTTGCGCAATGTCCTCTACACGCTCGACTTGGAGGGGAACATG
GACCTGTTCGACCTGGGGGTGGACGGGAACCAGACGACGCAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8314:4150..10444-

>mRNA_H-paniculata_contig8314.16334.1 ID=mRNA_H-paniculata_contig8314.16334.1|Name=mRNA_H-paniculata_contig8314.16334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig8314:4150..10444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCCGGCGCCACTTGCCCGCGAGCGGGATCACGTGGAGTGCATGAC
ATTTATGGGTTTGCTACCGGAGATCGATCACGCTTGGATGACGGTGGATA
ACGTACTGTTTCTCTGGAACTATCACAACCAGGATTTCACTCAGTACCGA
GAACTGGAACAGATGCTCCCGGCGCCACTTGCCCGCGAGCGGGATCACGT
GGAGTGCATGACATTTATGGGTTTGCTACCGGAGATCGATCACGCTTGGA
TGACGGTGGATAACGTACTGTTTCTCTGGAACTATCACAACCAGGATTTC
ACTCAGTACCGAGAACTGGAACAGGTGATTGTGACGGTGGCACTGGTGCC
GCCCAAGCGGGGGGTATTTCAAGAGTCTGTCAAGCATGTGCTGGCGGTGG
CAACAACGGTGGAGGTGGTGCTGCTTGCCGTAACGTTTCAGGGGGAGTCG
AAGACGACGAGCTGCCGGAACCGCCGGATTCAGGTGATTGTGACGGTGGC
ACTGGTGCCGCCCAAGCGGGGGGTATTTCAAGAGTCTGTCAAGCATGTGC
TGGCGGTGGCAACAACGGTGGAGGTGGTGCTGCTTGCCGTAACGTTTCAG
GGGGAGTCGAAGACGACGAGCTGCCGGAACCGCCGGATTCAGGTTAGACC
AACTAATTTCCGCGCGGCGACGGATGGAGTGTCGATGCTGAAGATCGCAG
GCCATCCCAATGGTAGAGTGTTCATGGCTGGCAAGGACGGCAACATGTAC
GAGCTATCCTACTCTGTCTCCTACGGGTTCATGTACTCGGTGTTTTTCGT
GGGGGATGCTACGGGCGCCCGGAAGTGTAAGAGAGTGAGGCACAGGTTAG
ACCAACTAATTTCCGCGCGGCGACGGATGGAGTGTCGATGCTGAAGATCG
CAGGCCATCCCAATGGTAGAGTGTTCATGGCTGGCAAGGACGGCAACATG
TACGAGCTATCCTACTCTGTCTCCTACGGGTTCATGTACTCGGTGTTTTT
CGTGGGGGATGCTACGGGCGCCCGGAAGTGTAAGAGAGTGAGGCACAGAT
CAAGCGGTGCTTCCCCGTCACCAATGCACGCGATGTACGCCTTGCTCGGG
ATGCGGAGCGCGCAGCGCACGTTGGCTGATGTGGTCGTTGATCCGTTGCG
CAATGTCCTCTACACGCTCGACTTGGAGGGGAACATGGACCTGTTCGACC
TGGGGGTGGACGGGAACCAGACGACGCAGAAGATCAAGCGGTGCTTCCCC
GTCACCAATGCACGCGATGTACGCCTTGCTCGGGATGCGGAGCGCGCAGC
GCACGTTGGCTGATGTGGTCGTTGATCCGTTGCGCAATGTCCTCTACACG
CTCGACTTGGAGGGGAACATGGACCTGTTCGACCTGGGGGTGGACGGGAA
CCAGACGACGCAGAAG
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