|
|
Homology
BLAST of mRNA_H-paniculata_contig8293.16315.1 vs. uniprot
Match: D8LKQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ1_ECTSI) HSP 1 Score: 237 bits (604), Expect = 1.670e-70 Identity = 168/391 (42.97%), Postives = 206/391 (52.69%), Query Frame = 1
Query: 19 GVVKKGYVQHGHRVLLRGTTRCGKSAILFDCCHRAAAAGHQVVLVYLK--RDEQDLVHLPHAMRSDRNSVQRDELGGWDASALSRIGLKYVRSRDDLAWYLGSLHTLPREQWPTMIAVDDLDRIVDTSAGGHVGN--------------ASSGGSTSGGAGARPGQDTAEFFDRSRTATIGATSAAAAGT--GASPACPKSATARSDPAYTPSDAENPVGTSSHTVIPERNMG--LFLEGGRDD----TRGGGA---------GPGRENCQPEA--VRVVATCSILDRGLISLYGRFMHVVTRVQNTAGPDCFSVRVDPGICTAPAQQLQITAVETQSRVFGGSRGG--------------------------DAMAVEFARSQIDGSFAV 1008
G +K V+HG RVL+RGT RCGK+ IL+D CHRAA AGH+VVLV LK D +DL +LP +MR+ S DEL GW+A AL RIG+KYVRSRDDLAWYL SLHTL + QWPT+IAVDD+D+I++TSAG A QDTAEFFD+SR + A G+ G++P AE G +T P+ L + GG + T G G+ G GR++ EA VRVV TCS DRG++SLYGRF+HVV RVQNT GPDCFS+RVDPGI TA A + + GG G VE+ RSQIDGSFA+
Sbjct: 105 GRARKPRVKHGLRVLVRGTCRCGKTTILWDYCHRAAVAGHRVVLVCLKTANDSEDLSNLPRSMRAGGES---DELRGWEAIALGRIGIKYVRSRDDLAWYLASLHTLKKSQWPTVIAVDDVDKIIETSAGXXXXXXXXXXXXXXXLRILALL-------------QDTAEFFDKSRAEAAATAAXXARGSTAGSTPNRXXXXXXXXXXXXXXQPAERGSGGGGNTSSPQSQPSGNLRVVGGEGERFAWTPGEGSRAADGARPKGGGRDDITGEAAAVRVVTTCSTSDRGMLSLYGRFVHVVARVQNTTGPDCFSLRVDPGIGTASAPAPYLRPRPAAASGSGGFAPGFTPWDGXXXXXXXXXXXXXXXXXXXXHQEVVEYVRSQIDGSFAL 479
BLAST of mRNA_H-paniculata_contig8293.16315.1 vs. uniprot
Match: A0A835ZEM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM9_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 3.150e-17 Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 55 RVLLRGTTRCGKSAILFDCCHRAAAAGHQVVLVYLKRDEQDLVHLPHAMRSDRNSVQRDELGGWDASALSRIGLKYVRSRDDLAWYLGSLHTLPREQWPTMIAVDDLDRIVDTSA 399
R+LLRG R G+S++LFD +R A G +V + +K + + L A + + + GWD +AL RIG+KYV SR+DL W+LGS+ L RE +P + VDD+D I+ SA
Sbjct: 43 RLLLRGPPRSGRSSLLFDHAYRLARRGLRVTYICMKARIERQLPLQCAQAQEPHDAPQ----GWDPAALERIGMKYVASREDLLWFLGSVQMLRREAFPCALLVDDIDVILGASA 153
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | P-loop containing nucleoside triphosphate hydrolase |
| Ec32 ortholog | Ec-07_004360.1 |
| Exons | 6 |
| Model size | 1078 |
| Cds size | 816 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8293.16315.1 >prot_H-paniculata_contig8293.16315.1 ID=prot_H-paniculata_contig8293.16315.1|Name=mRNA_H-paniculata_contig8293.16315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp
MRSDRNSVQRDELGGWDASALSRIGLKYVRSRDDLAWYLGSLHTLPREQW
PTMIAVDDLDRIVDTSAGGHVGNASSGGSTSGGAGARPGQDTAEFFDRSR
TATIGATSAAAAGTGASPACPKSATARSDPAYTPSDAENPVGTSSHTVIP
ERNMGLFLEGGRDDTRGGGAGPGRENCQPEAVRVVATCSILDRGLISLYG
RFMHVVTRVQNTAGPDCFSVRVDPGICTAPAQQLQITAVETQSRVFGGSR
GGDAMAVEFARSQIDGSFAVV* back to topmRNA from alignment at H-paniculata_contig8293:3961..9567+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8293.16315.1 ID=mRNA_H-paniculata_contig8293.16315.1|Name=mRNA_H-paniculata_contig8293.16315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5607bp|location=Sequence derived from alignment at H-paniculata_contig8293:3961..9567+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCGGCTGGTGTAAGGGGGGTAGTTAAAAAGGGGTATGTGCAGCATGG
GCACAGGGTACTTCTGCGCGGGACTACAAGGTGAGAGAGAACACGTGGTT
ATATATTCAGACGGAGGGCCGGGTTGTGGGGATTTTACCGCTTCCCCCAT
GGAAAAGTGTTCCGAAATTCGCCCAGCGATGTCATCGTGGCAATGAGCAC
CTTTATCAAATAGCCTTTTTAGCACAATAGGCTGTTTCGGAACACCGAAG
GCATCTGATAACAAAGACATGTCGTCAGAGCGCTATAGTCGTTGTGAATC
ATAACTCCGCCTGATACATACCCAGTGCTACATGTAGCTACCGTCAATAG
TGAAGTACTGTCTATCTCAACAGGGGCTGCCCCCTATCATGCCGTAGGTG
TCGTAGGTGATATGGGAACCAACCCTGGAAGTGTTGACACGGCAAGGCCG
TCATCGTTTCGGAACAGGTTTTCCAAGTCTATAGCTCAAGAACAAATCAC
AAACTATACTCTCGAAGTGTTTTATGGGGATCGGCGCTGAAAGCGCTTGT
GCAGCAAGGCCGTCGTCACAATTTCGGAACAGCTTTTCAATGCTGCAATC
TATTAAGTTCTAGACAAATAATGAATCTCAGTCTGAGCGTAGCGAAGTAC
CACCTCGAGCGCAGCAAGCTGTTGTTTATAGTTTGAGAACAAAGCACGGG
CTGCACCGGCGAAGCCTTGACTCTACTGCTGCCTACTATGATTGTGTATC
AATCGGATTTGTTGTAATCTCGATCGATCAAAAAGCAGGTGTGGAAAAAG
TGCCATCCTCTTCGACTGCTGCCACCGTGCGGCGGCTGCTGGCCACCAGG
TGGTGCTCGTGTACCTCAAGCGGGACGAACAAGACCTCGTGCACTTACCG
CACGCCATGCGTTCTGACCGGAATTCAGGTAACGACGCCTTCTACTGTAC
AAGTGCCTCTTTGACACACAGGTTTCTTGCCGGTACACATACTGTAACGT
GCCCGAACCTCAGACCGCCGTTTAAAAATGCCCTGATTTTTTTCGTGACT
TTTTTCTTTTTCCTTTCCCCCCCGAGAGATGTTGTGTATGTCTGTTGAAT
TTTGTTGGATTTAAAAAAATCATGAACACGTAAGATCATCATTTATTGTT
TCCCGACCAACCCCAATGTTCCATCGAACATAGCAAAAATACTCTTCTGA
TTTTGTGTTTTTTTTTCGAATTGTCCGGCCTCTTCAAGGCTCGAACGGCC
ACCAAACTAGCTGCGAACGACATTGCATGTTGCCCTTCGCCCGCTGTATA
TCGATACCTTGATGTCTGCCTGCCTGCCTCGGAAAGCGGGCCTTTGACGT
TTTTTATCGTATGATATATTGTCGCCGAAACCGGCTTCGTCCTGCATATT
GGTACCGGTGGTTTCGGGTCGGTGAGCGGACTCTGCGACCGCTGAGGAGC
ACAGAAGATTCGGAAGTCCCTGAAGACCGTGTGTCAATAGTTAGGGTTTG
GGTGTTAACGGTAGCTGGTCCTTTCTCTCTGCGTATTTTTTGCTGGCATG
CTGCCCCAGAGACGCGGCGTTTCGCAGAGGAAGATACCCTTACAATTGTA
GTTTCCGTATGCTCTATATTACCTTAGTAGCTCGTGGGCGTGCTTGAGCG
CTTCTAGTCGTTGAGATATAGCAAGAACCCCTGATCTAAGCAGTCAGTGT
TGGCTAAGTAGCTCAGTGGTTATTGTGATAACTCGAAAAAAGATGATTCC
GGGGCCCTTCGGGCTATAACGCCGTCGGACCCAGACTTTACTGCGGGGCT
GCTGTCCCTGTAATGAGCGCTTTTTTTGGCATGAGTTCCAGACGAGCAAA
ACTTCATTATGCTTCTTGTGACTGGAGCGTATATTCGATGACTTCAGCTG
TGTGCCGCCGTATGTATTTTTCTCATGAAAGAAATAAACTGTCCGAGAAT
GATCGCGGGGGAAATCGAACCCTGGCATTGGCTCTTGTTGTGATATTTGA
ACACTAACGTTGACCCTTTTGGTGCCGGAGGCGATACGGAACGACCAAGG
TGTCTGACAACAGCTGTCGAATGCTGCAGTCGTTGCAGGCGAAACCACGC
CCACTACCTGTCTGTGTTGTATCTACATGTGCTCGCCCCCACTTCTTGTC
TTTGCGAGGAAACGATCAACGCGTTTCCCCCCCCACGCGCAGTGCGGTGC
TGCACATCACAGCGCAGCACGATGCAGCATGGCGCAGCACAATCCAGTGC
AGAGCATTTCTCAGCAGCGGAGCACATCACAAAGCACAAGTCGGTCGGGT
CCAGCCTGACGCAACCAACAGAAGATTATTTTTTTGTTTTTTTCTAACTT
ATACAATATATATTGGAACAGAATCCAACGCAGGTCATGAAAAACTAGCT
CTTGTAGAGCACCCTCTGCTTCTGATTAGCCGAGTTTCGTCAATTTCCCC
CCCGCGGAAATCGCTCTAATAGGAACAACCCTCCGTCTTCCCGAGGACGT
GTGATAAATGGTCTAACAACTATGACATACAAAACATGAGTACTCCCCCC
TTTCGTCTCTTTCCTCATCGTTTGGTGTTTTGTGTGACTTTTAACAGTTC
AACGTGACGAACTTGGGGGATGGGACGCGTCGGCTCTTAGCCGAATAGGT
CTCAAGTATGTGCGGTCGCGGGATGACCTGGCATGGTACTTGGGCAGCTT
GCACACGCTACCAAGGGAACAGTGGCCGACTATGATCGCGGGTAAAAGCT
CCAAGAATTGAACGCTTTTTTTTATCTGATTGACTTTTCGGAGTGTTGCC
CCCCCCCCCCCACCCCCCTCGACAAACGAGTGCATGGATGAGGTCCTAAC
ATAAATTTTTCCTCTTGGGCAGGCTGTTTACAAACATGAAGGGTTTGTGA
AAGGCTTGTGCGAAGTGTTGTACAAACCACGTGTCGTCGTTGTGGAGGTA
AGAGTACTCCAGAAACACGCCTGGTGTGTCACGTGTCGGCAGGCTCTAGA
GGACCACTGAAGCTTGCCCACACTCAGCCGAGTACCACACACAACCCCGT
TTCCGTTCTCCCAAGCGATATAGTTGAGGCACGCTAGCAACGTTTGTTTT
TATGCAAAAATTCTACATGCGGTCGATTGTTTTTCGTCAGTCTCCCCATG
CCCACCCTCCCCGCTCCCCCATGCACCTGGTGACTCATGCCTTCAGTCGA
TGACTTAGATAGGATAGTGGACACTTCGGCAGGTGGCCATGTCGGCAATG
CATCCTCCGGCGGGTCGACTAGCGGCGGCGCGGGGGCGACCGCGGCGCTA
AGGATCCTCGCACTGTTGCAGGTGAGATCAAGCGTGCATGTTCTGTGCTG
CGCGAGTTGGTATGAACAGCACGGGGTTCGCTCGGGTCATTGACAAGGAT
TGTGCTTGCTTATCTCTCTCCTACAGTAGTCCAGGGCGCTTCACATCTCT
GAGGAGAAAGTAAAGAGTTAAATGAAAAGTTGTGACAAGGTTTGGCTGTG
GTGAAAGCTGGGCATATGATGAGAATTTGGGAGGGTAATATTATGTTTGG
CGCTACTCCTGTACTGGTTGTCTCTAGGCTGCATTACTGTCGGCTTTTCC
TCATTGTAAGGTCACAGCATTCTCGCCCTGGAAGCCCCGGGACTTGCTTT
GTGCTCTCGGGTAAGCTTGGCCGATGACCTCACGATTAGGGCTTGGAACA
CATGTGCGCCGCCGTTTGAGTGCCATATTTCGGCGGGTTTTAATTTGTTT
CGCCGGTAAAAATAAGGTACTGCTCATCTGGAGATGAAGAGAATTCGTCC
CTGTTCAGGTTGTTGTTCACCACCTAAACCCCGTTCCATTGTCAGGATCT
TCGATGAAAGCCGTAAGGTTATCGGTTTCGCCCTGATAGCGACGGGATGA
TTTCCTCTAGCTGTTCATTAAGGTTTTTTCTCTTTCGAAGGTATTTTATT
GCTAGTTAATTTAGCCTGCGTTTGTAGCGCTAATTTCCAGTTTCTCAGGA
AAAAAATCATTCTTCGGGGATGTGCGCTCCGGGTTTCCATTCTCATAAGG
TCCGTCTGGATGCAGCACAACGTTTCACAGTTTAGGTTAAGGGTACTACC
CGCTGGGAGAGAGATAAATTATCACTTACGAGGCTTTTCTCCACATCGCG
CACCTTATCTCCAAGTACATGCTCTTTTGGGTACATCTGATCGGTGAGTC
GCGTCAGAGTCAAGCGCGCCTTTGTCTAGATTGGGTCCTTTCTGTGTGGT
AAATCCAGCTGGAAAATTTGATGGTTCTAACCGAGCGCACGTGACGAAAG
CTGTATATTGGGTAGCGTCAAGGAAGTACGAGAAGGGAAATTCGGTGCAC
GGGCTTTCCCTTAACCTGCTGCCTCTAATCTTCCAAAGCTGGTTAGCTTC
CGTTCCCTCCCTCCTCGGCTCCGGACCTATAGAAATGGAGTATACCTCTC
TACTGTCCCTGCGCCCTGGACAGGATACAGCAGAATTTTTTGACCGCTCG
AGGACTGCGACCATTGGCGCAACATCTGCGGCAGCGGCAGGTACAGGTGC
AAGTCCAGCTTGCCCAAAGTCGGCGACAGCACGATCGGACCCCGCGTACA
CGCCCTCGGATGCAGAGAATCCCGTAGGCACAAGTTCCCACACCGTAATC
CCCGAGAGGAACATGGGATTGTTTTTAGAGGGGGGAAGAGACGACACAAG
GGGCGGGGGTGCTGGCCCCGGCCGTGAAAATTGCCAGCCGGAGGCGGTCC
GGGTCGTCGCTACATGCTCCATATTGGACCGGGGTCTTATTTCACTGTAT
GGCAGGTGGGGCTTGAGTTATTTGCGGAATATCAACAGGCTCTCGCCGCA
TTGCAATTTCCACATGAGTCTTTGGGAGTGATTTACTTCTGCTCAAGATC
GACGCACCGTGCCCAACCTTTGCTGTGGGTGGTGAACTTCCAGTGCTTAT
GTTGGTTTGTAGAGTAAAACGCGAACATTCATTGCTGATGTTGGTAAAGT
AAAACGCCCAAATTGTCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGATGACCGTTGTCCACCGTTGAGCGTTAATCCAGCGATTGGATCAT
GCGGTAGACATGTCATTCCCTCGACGTGGGCGCTTTGACGCTTGTCGCAG
CATCGTAATTTCGTATTGATGTGGTCAGGCTTGAAATACCCAGCTGGTCG
CTGTGTTAGCAATCACCTTCCTCGCTCACTGACTCGGCGAGAACGATTGT
GTGATACTCCGCCGCCCCCGCCCCCGCATCCCTCCTGTTTCGTTCCTGAC
GCTGGCCGAAACGGTGCTTGTTGAAAAAGGTTTATGCACGTGGTTACAAG
GGTACAAAACACCGCTGGACCGGACTGCTTTTCGGTTCGCGTGGACCCCG
GCATATGCACGGCACCGGCCCAGCAATTACAGATTACCGCGGTCGAAACG
CAGTCGCGGGTATTTGGTGGATCTCGCGGTGGCGATGCCATGGCAGTGGA
GTTCGCGCGGTCTCAGATCGATGGGTCTTTCGCGGTAGTTTGAGCTAATT
TATCTCCGGCGTTTATCTCGCCTAGAATGGCTTTCCTTTTAGCTGCTATG
GTTGCGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig8293:3961..9567+ >mRNA_H-paniculata_contig8293.16315.1 ID=mRNA_H-paniculata_contig8293.16315.1|Name=mRNA_H-paniculata_contig8293.16315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig8293:3961..9567+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTCTGACCGGAATTCAGATGCGTTCTGACCGGAATTCAGTTCAAC
GTGACGAACTTGGGGGATGGGACGCGTCGGCTCTTAGCCGAATAGGTCTC
AAGTATGTGCGGTCGCGGGATGACCTGGCATGGTACTTGGGCAGCTTGCA
CACGCTACCAAGGGAACAGTGGCCGACTATGATCGCGGTTCAACGTGACG
AACTTGGGGGATGGGACGCGTCGGCTCTTAGCCGAATAGGTCTCAAGTAT
GTGCGGTCGCGGGATGACCTGGCATGGTACTTGGGCAGCTTGCACACGCT
ACCAAGGGAACAGTGGCCGACTATGATCGCGGTCGATGACTTAGATAGGA
TAGTGGACACTTCGGCAGGTGGCCATGTCGGCAATGCATCCTCCGGCGGG
TCGACTAGCGGCGGCGCGGGGGCTCGATGACTTAGATAGGATAGTGGACA
CTTCGGCAGGTGGCCATGTCGGCAATGCATCCTCCGGCGGGTCGACTAGC
GGCGGCGCGGGGGCGCGCCCTGGACAGGATACAGCAGAATTTTTTGACCG
CTCGAGGACTGCGACCATTGGCGCAACATCTGCGGCAGCGGCAGGTACAG
GTGCAAGTCCAGCTTGCCCAAAGTCGGCGACAGCACGATCGGACCCCGCG
TACACGCCCTCGGATGCAGAGAATCCCGTAGGCACAAGTTCCCACACCGT
AATCCCCGAGAGGAACATGGGATTGTTTTTAGAGGGGGGAAGAGACGACA
CAAGGGGCGGGGGTGCTGGCCCCGGCCGTGAAAATTGCCAGCCGGAGGCG
GTCCGGGTCGTCGCTACATGCTCCATATTGGACCGGGGTCTTATTTCACT
GTATGGCAGGCGCCCTGGACAGGATACAGCAGAATTTTTTGACCGCTCGA
GGACTGCGACCATTGGCGCAACATCTGCGGCAGCGGCAGGTACAGGTGCA
AGTCCAGCTTGCCCAAAGTCGGCGACAGCACGATCGGACCCCGCGTACAC
GCCCTCGGATGCAGAGAATCCCGTAGGCACAAGTTCCCACACCGTAATCC
CCGAGAGGAACATGGGATTGTTTTTAGAGGGGGGAAGAGACGACACAAGG
GGCGGGGGTGCTGGCCCCGGCCGTGAAAATTGCCAGCCGGAGGCGGTCCG
GGTCGTCGCTACATGCTCCATATTGGACCGGGGTCTTATTTCACTGTATG
GCAGGTTTATGCACGTGGTTACAAGGGTACAAAACACCGCTGGACCGGAC
TGCTTTTCGGTTCGCGTGGACCCCGGCATATGCACGGCACCGGCCCAGCA
ATTACAGATTACCGCGGTCGAAACGCAGTCGCGGGTATTTGGTGGATCTC
GCGGTGGCGATGCCATGGCAGTGGAGTTCGCGCGGTCTCAGATCGATGGG
TCTTTCGCGGTAGTTTGAGTTTATGCACGTGGTTACAAGGGTACAAAACA
CCGCTGGACCGGACTGCTTTTCGGTTCGCGTGGACCCCGGCATATGCACG
GCACCGGCCCAGCAATTACAGATTACCGCGGTCGAAACGCAGTCGCGGGT
ATTTGGTGGATCTCGCGGTGGCGATGCCATGGCAGTGGAGTTCGCGCGGT
CTCAGATCGATGGGTCTTTCGCGGTAGTTTGA back to top
|