mRNA_H-paniculata_contig82854.16306.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82854.16306.1
Unique NamemRNA_H-paniculata_contig82854.16306.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: D1J7D7_ECTSI (Multifunctional fusion protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D7_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 5.800e-79
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 330
            MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY
Sbjct:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 110
[Close]
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: RBS_ECTSI (Ribulose bisphosphate carboxylase small subunit n=136 Tax=Phaeophyceae TaxID=2870 RepID=RBS_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.660e-78
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 330
            MRVTQGCFSFLPDLSDDQIKQQV+YAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY
Sbjct:    1 MRVTQGCFSFLPDLSDDQIKQQVSYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 110
[Close]
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: Q52Z36_9PHAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=1 Tax=Lessonia flavicans TaxID=169771 RepID=Q52Z36_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 7.840e-73
Identity = 99/109 (90.83%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGF 327
            MRVTQGCFSFLPDLSD+QIK+QVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFD++DPAA+MYEL ECRKVNPEGYIKINAFDASIGTESCV+SF+VQRP  EPGF
Sbjct:    1 MRVTQGCFSFLPDLSDEQIKKQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFLVQRPSNEPGF 109
[Close]
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: A0A0S0GBG1_COSCS (Multifunctional fusion protein n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GBG1_COSCS)

HSP 1 Score: 220 bits (561), Expect = 2.100e-72
Identity = 98/110 (89.09%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 330
            MRVTQGCFSFLPDL+D+QIK+QVAYAM+KGWAVSVEWTDDPHPRN+YWELWGLPLFD++DPAA+MYEL ECRKVNPEGYIKINAFDASIGTESCV+SFIVQRP  EPGFY
Sbjct:    1 MRVTQGCFSFLPDLTDEQIKKQVAYAMTKGWAVSVEWTDDPHPRNAYWELWGLPLFDIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPSNEPGFY 110
[Close]
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: Q52Z56_9PHAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=2 Tax=Chorda filum TaxID=64905 RepID=Q52Z56_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 2.920e-72
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 330
            MRVTQGCFSFLPDLSD+QI +QV YAM+KGWAVSVEWTDDPHPRNSYWELWGLPLFD+KDPAAVMYEL ECR+VNP+GYIKINAFDASIGTESC MSFIVQRP+ EPGFY
Sbjct:    1 MRVTQGCFSFLPDLSDEQITKQVNYAMTKGWAVSVEWTDDPHPRNSYWELWGLPLFDIKDPAAVMYELNECRRVNPDGYIKINAFDASIGTESCAMSFIVQRPVNEPGFY 110
[Close]
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: A0A0R6LUN5_UNDPI (Multifunctional fusion protein n=44 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN5_UNDPI)

HSP 1 Score: 219 bits (558), Expect = 6.010e-72
Identity = 98/110 (89.09%), Postives = 106/110 (96.36%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 330
            MRVTQGCFSFLPDL+D+QIK+QVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFD++D AA+MYELAECRKVNPEGYIKINAFDASIGTESC +SF+VQRP  EPGFY
Sbjct:    1 MRVTQGCFSFLPDLTDEQIKKQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDIQDAAALMYELAECRKVNPEGYIKINAFDASIGTESCALSFLVQRPANEPGFY 110
[Close]
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: Q9GGQ1_VAULI (Multifunctional fusion protein n=2 Tax=PX clade TaxID=569578 RepID=Q9GGQ1_VAULI)

HSP 1 Score: 210 bits (534), Expect = 2.740e-68
Identity = 90/110 (81.82%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 330
            MRVTQGCFSFLPDLSD+QIK+Q+ YA++KGWA+S+EW+DDPHPRN+YWELWGLPLFD+KD +AV+YE+ ECR+VNPEGY+KINAFDASIGTESCVMSFIVQRP  EPGFY
Sbjct:    1 MRVTQGCFSFLPDLSDEQIKKQIEYAVNKGWAISIEWSDDPHPRNTYWELWGLPLFDIKDSSAVLYEITECRRVNPEGYMKINAFDASIGTESCVMSFIVQRPNEEPGFY 110
[Close]
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: A0A1L2F1V1_9PHAE (Multifunctional fusion protein n=208 Tax=Fucales TaxID=3009 RepID=A0A1L2F1V1_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.120e-67
Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 330
            MR+TQGCFSFLPDLSD+QIK QV YA+SKGWAVSVEWTDDPHPRN+YWELWGLPLFD+KD AAVMYEL ECR++NPEGYIKIN +DAS GTESC +SFIVQRP  EPGFY
Sbjct:    1 MRITQGCFSFLPDLSDEQIKNQVNYAISKGWAVSVEWTDDPHPRNAYWELWGLPLFDIKDSAAVMYELNECRRINPEGYIKINCYDASKGTESCALSFIVQRPAEEPGFY 110
[Close]
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: A0A2I4Q2E0_9PHAE (Multifunctional fusion protein n=11 Tax=Dictyopteris TaxID=112054 RepID=A0A2I4Q2E0_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 4.550e-67
Identity = 90/110 (81.82%), Postives = 104/110 (94.55%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 330
            MR+TQGCFSFLPDL+D+QIK+QV YA++K WAVSVEWTDDPHPRNSYWELWGLPLFD+KDPAA++YEL +CR+VNPEGYIK+NAFDA+ GTESCV+SFIVQRP  EPGFY
Sbjct:    1 MRLTQGCFSFLPDLTDEQIKKQVEYAITKEWAVSVEWTDDPHPRNSYWELWGLPLFDIKDPAALLYELNQCRRVNPEGYIKVNAFDANRGTESCVLSFIVQRPTEEPGFY 110
[Close]
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Match: E8Z964_9PHAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=2 Tax=Dictyopteris repens TaxID=218863 RepID=E8Z964_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 7.790e-67
Identity = 90/110 (81.82%), Postives = 101/110 (91.82%), Query Frame = 1 
Query:    1 MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFY 330
            MR+TQGCFSFLPDL+D+QI  QV YA+SKGWA+S+EWTDDPHPRNSYWELWGLPLFD+KD AAV+YEL +CR+VNPEGYIKINAFDAS GTESC +SFIVQRP  EPGFY
Sbjct:    1 MRITQGCFSFLPDLTDEQITSQVNYAISKGWAISIEWTDDPHPRNSYWELWGLPLFDIKDSAAVLYELNQCRRVNPEGYIKINAFDASKGTESCALSFIVQRPTEEPGFY 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82854.16306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7D7_ECTSI5.800e-79100.00Multifunctional fusion protein n=10 Tax=Phaeophyce... [more]
RBS_ECTSI1.660e-7899.09Ribulose bisphosphate carboxylase small subunit n=... [more]
Q52Z36_9PHAE7.840e-7390.83Ribulose-1,5-bisphosphate carboxylase/oxygenase sm... [more]
A0A0S0GBG1_COSCS2.100e-7289.09Multifunctional fusion protein n=33 Tax=Phaeophyce... [more]
Q52Z56_9PHAE2.920e-7289.09Ribulose-1,5-bisphosphate carboxylase/oxygenase sm... [more]
A0A0R6LUN5_UNDPI6.010e-7289.09Multifunctional fusion protein n=44 Tax=Laminarial... [more]
Q9GGQ1_VAULI2.740e-6881.82Multifunctional fusion protein n=2 Tax=PX clade Ta... [more]
A0A1L2F1V1_9PHAE1.120e-6783.64Multifunctional fusion protein n=208 Tax=Fucales T... [more]
A0A2I4Q2E0_9PHAE4.550e-6781.82Multifunctional fusion protein n=11 Tax=Dictyopter... [more]
E8Z964_9PHAE7.790e-6781.82Ribulose-1,5-bisphosphate carboxylase/oxygenase sm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82854contigH-paniculata_contig82854:2..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.9
Seed ortholog evalue4.5e-60
Seed eggNOG ortholog2880.D1J7D7
Preferred namerbcS
KEGG rclassRC00172,RC00859
KEGG koko:K01602
KEGG ReactionR00024,R03140
KEGG Pathwayko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200
KEGG ModuleM00165,M00166,M00532
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ribulose-bisphosphate carboxylase activity
EggNOG OGs2QTPB@2759,COG4451@1
EC4.1.1.39
COG Functional cat.C
BiGG ReactioniRC1080.CRv4_Au5_s2_g9202_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.7902865-CDS-H-paniculata_contig82854:1..3311622931039.7902865-CDS-H-paniculata_contig82854:1..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82854 2..331 -
1691481562.0191138-CDS-H-paniculata_contig82854:1..3311691481562.0191138-CDS-H-paniculata_contig82854:1..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82854 2..331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82854.16306.1prot_H-paniculata_contig82854.16306.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82854 2..331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82854.16306.1

>prot_H-paniculata_contig82854.16306.1 ID=prot_H-paniculata_contig82854.16306.1|Name=mRNA_H-paniculata_contig82854.16306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MRVTQGCFSFLPDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWEL
WGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIV
QRPITEPGFY
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mRNA from alignment at H-paniculata_contig82854:2..331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82854.16306.1 ID=mRNA_H-paniculata_contig82854.16306.1|Name=mRNA_H-paniculata_contig82854.16306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig82854:2..331- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGTTACACAAGGATGTTTTTCGTTTTTACCAGATTTAAGTGATGA
TCAAATTAAACAACAAGTTGCTTACGCTATGAGCAAAGGTTGGGCGGTTA
GTGTAGAATGGACAGATGATCCACACCCGCGTAACTCATATTGGGAATTA
TGGGGTCTTCCTTTATTTGATGTTAAAGATCCAGCTGCAGTTATGTATGA
ACTTGCTGAATGTAGAAAAGTTAACCCAGAAGGTTATATTAAAATTAATG
CTTTCGATGCTAGTATTGGTACAGAAAGTTGTGTAATGTCTTTTATTGTA
CAACGTCCTATTACTGAACCTGGTTTCTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig82854:2..331-

>mRNA_H-paniculata_contig82854.16306.1 ID=mRNA_H-paniculata_contig82854.16306.1|Name=mRNA_H-paniculata_contig82854.16306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig82854:2..331- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGTTACACAAGGATGTTTTTCGTTTTTACCAGATTTAAGTGATGA
TCAAATTAAACAACAAGTTGCTTACGCTATGAGCAAAGGTTGGGCGGTTA
GTGTAGAATGGACAGATGATCCACACCCGCGTAACTCATATTGGGAATTA
TGGGGTCTTCCTTTATTTGATGTTAAAGATCCAGCTGCAGTTATGTATGA
ACTTGCTGAATGTAGAAAAGTTAACCCAGAAGGTTATATTAAAATTAATG
CTTTCGATGCTAGTATTGGTACAGAAAGTTGTGTAATGTCTTTTATTGTA
CAACGTCCTATTACTGAACCTGGTTTCTATATGAGAGTTACACAAGGATG
TTTTTCGTTTTTACCAGATTTAAGTGATGATCAAATTAAACAACAAGTTG
CTTACGCTATGAGCAAAGGTTGGGCGGTTAGTGTAGAATGGACAGATGAT
CCACACCCGCGTAACTCATATTGGGAATTATGGGGTCTTCCTTTATTTGA
TGTTAAAGATCCAGCTGCAGTTATGTATGAACTTGCTGAATGTAGAAAAG
TTAACCCAGAAGGTTATATTAAAATTAATGCTTTCGATGCTAGTATTGGT
ACAGAAAGTTGTGTAATGTCTTTTATTGTACAACGTCCTATTACTGAACC
TGGTTTCTAT
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