mRNA_H-paniculata_contig8266.16286.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8266.16286.1
Unique NamemRNA_H-paniculata_contig8266.16286.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.090e-35
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            R+ C  +A K E+A TNTPQ++G SERDG+TLA + R + +    P  +WW LM T AY+ NRSPHS L    PY KL  +  +L  L +I A+A VH ER+ KKL+ R          + + +YRVLNP++  V+ SRN+TFIE
Sbjct:   28 RDYCKNSAIKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNLTFIE 172
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.070e-34
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            RE C +   K E+A TNTPQ++G +ER GRTLA +VR +   SGLP FLW GLM T  Y++NR PH+ L  + PYK L+ ++ANL HL  I A+A VH+E HT++L+P+          M + S+ + NP +  V  SRNV F+E
Sbjct:  346 REYCLQIGVKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLRAIGARAFVHVETHTRELDPKAWEGCLCGYSMDSKSFHIYNPETGNVRESRNVIFVE 490
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.710e-32
Identity = 65/145 (44.83%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            R+ C  +A K E+A TNTPQ++G+SERDG+TLA + R + +    P  +W  +M T AY+ NRSPHS L    PY KL  +  +L  L +I A+A VH ER+ KKL+ R          + + +YRVL+P++  V+ SRNVTFIE
Sbjct:  139 RDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLDPSNGAVVESRNVTFIE 283
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 5.370e-32
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            R+ C  +A K E+A TNTPQ++G+SERDG+TLA + R + +    P  +W  LM T AY+ NRSPHS L    PY KL  +  +L  L +I A+A VH ER+ KKL+ R          + + +YRVLNP++  V+ SRNVTFIE
Sbjct:  185 RDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVHQERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 329
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 9.420e-32
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            R+ C  +A K E+A TNTPQ++G+SERDG+TLA + R + +    P  +W  LM T AY+ NRSPHS L    PY KL  +  +L  L +I A+A VH ER+ KKL+ R          + + +YRVLNP++  V+ SRNVTFIE
Sbjct:  185 RDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 329
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.000e-31
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            R+ C  +A K E+A TNTPQ++G+SERDG+TLA + R + +    P  +W  LM T AY+ NRSPHS L    PY KL  +  +L  L +I A+A VH ER+ KKL+ R          + + +YRVLNP++  V+ SRNVTFIE
Sbjct:  185 RDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 329
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.010e-31
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            R+ C  +A K E+A TNTPQ++G+SERDG+TLA + R + +    P  +W  LM T AY+ NRSPHS L    PY KL  +  +L  L +I A+A VH ER+ KKL+ R          + + +YRVLNP++  V+ SRNVTFIE
Sbjct:  185 RDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 329
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5KLG0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.320e-31
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            R+ C  +ATK E+A TNT Q++G+SERDG+TLA + R + +    P  +W  LM T AY+ NRSPHS L    PY KL  +  +L  L +I A+A VH ER+ KKL+ R          + + +YRVLNP++  V+ SRNVTFIE
Sbjct:   76 RDYCKNSATKLEYAATNTTQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 220
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.840e-31
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            R+ C  +A K E+A TNTPQ++G+SERDG+TLA + R + +    P  +W  LM T AY+ NRSPHS L    PY KL  +  +L  L +I A+A VH ER+ KKL+ R          + + +YRVLNP++  V+ SRNVTFIE
Sbjct:  381 RDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLLGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 525
[Close]
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 8.510e-31
Identity = 67/145 (46.21%), Postives = 90/145 (62.07%), Query Frame = 1 
Query:   16 RELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGLPTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKAIVHIERHTKKLEPRPGRDFSAAI-MTTASYRVLNPTSKRVLGSRNVTFIE 447
            R+ C  +A K E+A TNTPQ++G SERDG+TLA + R + +    P  +W  LM T AY+ NRSPHS L    PY KL  +  +L  L +I A+A VH ER+ KKL+ R          + + +YRVLNP++  V+ SRNVTFIE
Sbjct:  185 RDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIE 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8266.16286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ40_9PHAE7.090e-3546.21Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JWF9_9PHAE2.070e-3446.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF63_9PHAE4.710e-3244.83Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRJ1_9PHAE5.370e-3246.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE9.420e-3246.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE1.000e-3146.21Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE1.010e-3146.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KLG0_9PHAE1.320e-3146.21Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JSL6_9PHAE1.840e-3146.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE8.510e-3146.21Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8266contigH-paniculata_contig8266:6590..7036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score84.0
Seed ortholog evalue6.7e-14
Seed eggNOG ortholog7425.NV18998-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.7619362-CDS-H-paniculata_contig8266:6589..70361622931037.7619362-CDS-H-paniculata_contig8266:6589..7036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8266 6590..7036 -
1691481561.193323-CDS-H-paniculata_contig8266:6589..70361691481561.193323-CDS-H-paniculata_contig8266:6589..7036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8266 6590..7036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8266.16286.1prot_H-paniculata_contig8266.16286.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8266 6590..7036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8266.16286.1

>prot_H-paniculata_contig8266.16286.1 ID=prot_H-paniculata_contig8266.16286.1|Name=mRNA_H-paniculata_contig8266.16286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
TPRRARELCDETATKHEFACTNTPQEVGISERDGRTLAPIVRYMFQGSGL
PTFLWWGLMFTVAYVANRSPHSPLEMVIPYKKLFGEEANLKHLCIIKAKA
IVHIERHTKKLEPRPGRDFSAAIMTTASYRVLNPTSKRVLGSRNVTFIE
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mRNA from alignment at H-paniculata_contig8266:6590..7036-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8266.16286.1 ID=mRNA_H-paniculata_contig8266.16286.1|Name=mRNA_H-paniculata_contig8266.16286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig8266:6590..7036- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACCCAGGAGAGCTCGAGAGCTCTGCGATGAGACAGCGACTAAGCATGA
GTTTGCCTGCACCAATACGCCACAGGAAGTGGGGATCTCGGAGCGCGACG
GGAGGACGCTGGCCCCAATCGTGCGGTACATGTTCCAGGGCAGCGGGCTA
CCGACATTTCTTTGGTGGGGGCTGATGTTCACCGTGGCGTACGTGGCAAA
CCGGTCGCCGCACTCACCTCTCGAGATGGTGATCCCCTACAAGAAGCTGT
TTGGAGAGGAGGCCAACCTAAAGCACCTTTGTATCATCAAAGCCAAGGCG
ATCGTCCACATCGAGAGGCACACCAAAAAGCTGGAGCCCAGGCCTGGACG
GGATTTCTCTGCGGCTATAATGACAACAGCAAGCTACCGCGTTTTGAACC
CGACAAGTAAGCGAGTTCTGGGGAGCAGAAATGTCACCTTCATCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8266:6590..7036-

>mRNA_H-paniculata_contig8266.16286.1 ID=mRNA_H-paniculata_contig8266.16286.1|Name=mRNA_H-paniculata_contig8266.16286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig8266:6590..7036- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACCCAGGAGAGCTCGAGAGCTCTGCGATGAGACAGCGACTAAGCATGA
GTTTGCCTGCACCAATACGCCACAGGAAGTGGGGATCTCGGAGCGCGACG
GGAGGACGCTGGCCCCAATCGTGCGGTACATGTTCCAGGGCAGCGGGCTA
CCGACATTTCTTTGGTGGGGGCTGATGTTCACCGTGGCGTACGTGGCAAA
CCGGTCGCCGCACTCACCTCTCGAGATGGTGATCCCCTACAAGAAGCTGT
TTGGAGAGGAGGCCAACCTAAAGCACCTTTGTATCATCAAAGCCAAGGCG
ATCGTCCACATCGAGAGGCACACCAAAAAGCTGGAGCCCAGGCCTGGACG
GGATTTCTCTGCGGCTATAATGACAACAGCAAGCTACCGCGTTTTGAACC
CGACAAGTAAGCGAGTTCTGGGGAGCAGAAATGTCACCTTCATCGAAACA
CCCAGGAGAGCTCGAGAGCTCTGCGATGAGACAGCGACTAAGCATGAGTT
TGCCTGCACCAATACGCCACAGGAAGTGGGGATCTCGGAGCGCGACGGGA
GGACGCTGGCCCCAATCGTGCGGTACATGTTCCAGGGCAGCGGGCTACCG
ACATTTCTTTGGTGGGGGCTGATGTTCACCGTGGCGTACGTGGCAAACCG
GTCGCCGCACTCACCTCTCGAGATGGTGATCCCCTACAAGAAGCTGTTTG
GAGAGGAGGCCAACCTAAAGCACCTTTGTATCATCAAAGCCAAGGCGATC
GTCCACATCGAGAGGCACACCAAAAAGCTGGAGCCCAGGCCTGGACGGGA
TTTCTCTGCGGCTATAATGACAACAGCAAGCTACCGCGTTTTGAACCCGA
CAAGTAAGCGAGTTCTGGGGAGCAGAAATGTCACCTTCATCGAA
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