mRNA_H-paniculata_contig8253.16271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI) HSP 1 Score: 159 bits (403), Expect = 6.060e-41 Identity = 87/251 (34.66%), Postives = 146/251 (58.17%), Query Frame = 1
Query: 1 EYWKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV-PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
E W+ + + EMRS++ NG WE + +P+ + V K +Y+ K G +E++K RLVA+G Q +GV + E Y+P+ + ++R LL AA+D EL D + A L +++EE+Y++ P+G+ P V KK IYGL QA + W+ K ++ I F S +D + ++DGE + VVV V +IL AK + L +F +++LG A++++G +TR+R+AR +KL Q + + +G+
Sbjct: 574 EIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKRDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGE-RVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQKKLTKELLGRYGL 823
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A834S5H9_9PLEO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834S5H9_9PLEO) HSP 1 Score: 153 bits (387), Expect = 9.550e-40 Identity = 85/248 (34.27%), Postives = 141/248 (56.85%), Query Frame = 1
Query: 7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HVPGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
WK A E+E+R++V NG WE++ P+ +V K ++ K DG +E++K RLVA+G Q G+ YTE ++P ++R+ LAT A + E +D + A E+ + E++Y+ P G G V + +++YGL QAG+ WN+ ++ I F QS ADPC+ G + ++V+V +I AK + + WF L RF KNLG+ +G VTR+R + + LDQ +++ + + +G+
Sbjct: 99 WKEAIEEEIRTLVGNGTWEELIPPQGANLVTTKWVFTVKLKVDGTIERFKARLVARGFSQQHGIDYTETFAPTVRMDTLRLFLATVAKQGMECWQWDIKNAFTESYLKEDIYLTTPAGVKVKKGNVLKVLRSLYGLKQAGRDWNLLLKGFLTEIGFTQSLADPCLFTHKGRG---ISLLVYVDDIAAAAKLTSDLAWFDEMLLTRFNSKNLGEIRKILGVRVTRDRANKAIYLDQQQYLETVLDKYGI 343
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A1Y1IQX0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQX0_KLENI) HSP 1 Score: 155 bits (393), Expect = 1.380e-39 Identity = 85/238 (35.71%), Postives = 141/238 (59.24%), Query Frame = 1
Query: 1 EYWKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV-PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQ 711
E W+ + + EMRS++ NG WE + +P+ + V K +Y+ K G +E++K RLVA+G Q +GV + E Y+P+ + ++R LL AA+D EL D + A L +++EE+Y++ P+G+ P V KK IYGL QA + W+ + ++ I F+ S +D + +VDGE + VVV V +IL A + L +F +++LG A++++G +TR+R+AR +KL Q
Sbjct: 849 EIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKQDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPKTVCRLKKTIYGLRQAPRAWHQRLKAELGEIEFQASESDAALFTGVVDGE-RVWVVVWVDDILIAAAGEKRLAKVKAHLSRKFDVRDLGPAEYFLGMELTRDRRARTVKLTQ 1085
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A6J4L7Z3_9CYAN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=uncultured Leptolyngbya sp. TaxID=332963 RepID=A0A6J4L7Z3_9CYAN) HSP 1 Score: 152 bits (385), Expect = 4.350e-39 Identity = 86/238 (36.13%), Postives = 141/238 (59.24%), Query Frame = 1
Query: 7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HVPGA---VGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQ 711
WK A ++EM S+ NG W +P + + K +Y+ K G +E+YK RLVA+G Q EG+ Y E ++P+ +A++R LLA AA+D EL D + A L D++E +Y++ PEG+ V G V +K++YGL QA + WN + ++ + F S ADP + G + ++V+V +IL AK+ A +E T+L F +++LG+A++++G + RNR+A+ LK+ Q
Sbjct: 123 WKLAMDEEMASLHENGTWTLEQQPVGVRPIPVKWVYKVKRDALGNIERYKARLVAKGFMQKEGIDYNEVFAPVSKHATLRTLLALVAAEDLELHQLDIKTAFLNGDLEETIYMQQPEGY--VEGGRNMVCHLRKSLYGLKQAPRAWNTRLKQELEGMGFSASEADPGLFTAKYKGST-IYILVYVDDILVAAKNLADVEHIKTRLTTIFDVRDLGEAEYFLGMSLDRNRQAKTLKMSQ 357
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A834SA62_9PLEO (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834SA62_9PLEO) HSP 1 Score: 153 bits (387), Expect = 4.830e-39 Identity = 85/248 (34.27%), Postives = 141/248 (56.85%), Query Frame = 1
Query: 7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HVPGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
WK A E+E+R++V NG WE++ P+ +V K ++ K DG +E++K RLVA+G Q G+ YTE ++P ++R+ LAT A + E +D + A E+ + E++Y+ P G G V + +++YGL QAG+ WN+ ++ I F QS ADPC+ G + ++V+V +I AK + + WF L RF KNLG+ +G VTR+R + + LDQ +++ + + +G+
Sbjct: 218 WKEAIEEEIRTLVGNGTWEELIPPQGANLVTTKWVFTVKLKVDGTIERFKARLVARGFSQQHGIDYTETFAPTVRMDTLRLFLATVAKQGMECWQWDIKNAFTESYLKEDIYLTTPAGVKVKKGNVLKVLRSLYGLKQAGRDWNLLLKGFLTEIGFTQSLADPCLFTHKGRG---ISLLVYVDDIAAAAKLTSDLAWFDEMLLTRFNSKNLGEIRKILGVRVTRDRDDKAIYLDQQQYLETVLDKYGI 462
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A834VLD2_9PLEO (Integrase catalytic domain-containing protein n=16 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834VLD2_9PLEO) HSP 1 Score: 153 bits (387), Expect = 8.940e-39 Identity = 85/248 (34.27%), Postives = 141/248 (56.85%), Query Frame = 1
Query: 7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HVPGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
WK A E+E+R++V NG WE++ P+ +V K ++ K DG +E++K RLVA+G Q G+ YTE ++P ++R+ LAT A + E +D + A E+ + E++Y+ P G G V + +++YGL QAG+ WN+ ++ I F QS ADPC+ G + ++V+V +I AK + + WF L RF KNLG+ +G VTR+R + + LDQ +++ + + +G+
Sbjct: 1079 WKEAIEEEIRTLVGNGTWEELIPPQGANLVTTKWVFTVKLKVDGTIERFKARLVARGFSQQHGIDYTETFAPTVRMDTLRLFLATVAKQGMECWQWDIKNAFTESYLKEDIYLTTPAGVKVKKGNVLKVLRSLYGLKQAGRDWNLLLKGFLTEIGFTQSLADPCLFTHKGRG---ISLLVYVDDIAAAAKLTSDLAWFDEMLLTRFNSKNLGEIRKILGVRVTRDRANKAIYLDQQQYLETVLDKYGI 1323
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 153 bits (386), Expect = 1.130e-38 Identity = 83/251 (33.07%), Postives = 150/251 (59.76%), Query Frame = 1
Query: 7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*H--VPGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCM-LKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
WK A + E S++ N WE ++ PK VVG+K +++ K ++G +++YK RLVAQG Q EGV Y+E +SP+ N ++R LLA + AK+ E+ D + A L+ ++ EE+Y+ P+G+ + +P V + KK+IYGL Q+ +CWN + + ++Q +DPC+ +K I D + + +HV +IL + D + +G +FK+ ++G+ +G + R+R+ ++ + Q ++Q + + FG+
Sbjct: 738 WKQATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNL-EEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSIHVDDILLFSNDSCMLSEEKKLIGLKFKVDDMGEVKHVLGMVIRRDRRKGKMMISQSTYLQGILKRFGM 987
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY) HSP 1 Score: 151 bits (382), Expect = 1.780e-38 Identity = 88/248 (35.48%), Postives = 144/248 (58.06%), Query Frame = 1
Query: 7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV--PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETF 744
W +A +E SM NGVW + R + M VVG K +++RK GK+EK+K RLVA+G Q GV + E +SP+ S+R +L+ A D EL D + A L D++E+VY+E PEGF V + +K+IYGL QA + WN+KF + ++ + F Q+ ++PC+ + + +V + + ++V +IL D ++ L F++K+LG+A + +G + R+R R+L L Q ++ + E F
Sbjct: 346 WISAMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVI-LTLYVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 592
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A1Y1ISB6_KLENI (Putative retrotransposon protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ISB6_KLENI) HSP 1 Score: 149 bits (377), Expect = 3.420e-38 Identity = 86/240 (35.83%), Postives = 144/240 (60.00%), Query Frame = 1
Query: 1 EYWKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV-PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEIL--THAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQ 711
E W+ + ++EMRS++ NG+WE + +P+ + V K +Y+ K G +E+YK RLVA+G Q +G+ + E Y+P+ + ++R LLA AA+D EL D + A L +++E +Y++ P+G+ P V K+++YGL QA + W ++ +++ + F S AD + VDGE E+ ++V V +IL T KDR L F ++NLG+A +++G + R+R+AR LKL Q
Sbjct: 107 ELWRLSMDEEMRSLLENGIWELVEKPEGVKPVPMKWVYKIKRDALGNVERYKSRLVAKGYLQKQGIDFQEVYAPVSKHTTLRALLAVLAARDLELHQLDVKTAFLNGELEETIYMKQPQGYEQGGPEMVCLLKRSLYGLRQAPRAWYLRLKEELGLLEFGASVADAALFVGEVDGE-EVFLLVWVDDILIATRGKDRVAK--MKAHLARTFDMRNLGEATYFLGMELARDREARTLKLTQ 343
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A2N9I256_FAGSY (Uncharacterized protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I256_FAGSY) HSP 1 Score: 151 bits (382), Expect = 3.870e-38 Identity = 88/248 (35.48%), Postives = 144/248 (58.06%), Query Frame = 1
Query: 7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV--PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETF 744
W +A +E SM NGVW + R + M VVG K +++RK GK+EK+K RLVA+G Q GV + E +SP+ S+R +L+ A D EL D + A L D++E+VY+E PEGF V + +K+IYGL QA + WN+KF + ++ + F Q+ ++PC+ + + +V + + ++V +IL D ++ L F++K+LG+A + +G + R+R R+L L Q ++ + E F
Sbjct: 522 WISAMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVI-LTLYVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 768 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8253.16271.1 >prot_H-paniculata_contig8253.16271.1 ID=prot_H-paniculata_contig8253.16271.1|Name=mRNA_H-paniculata_contig8253.16271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp MRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLback to top mRNA from alignment at H-paniculata_contig8253:6847..7596+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8253.16271.1 ID=mRNA_H-paniculata_contig8253.16271.1|Name=mRNA_H-paniculata_contig8253.16271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=750bp|location=Sequence derived from alignment at H-paniculata_contig8253:6847..7596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8253:6847..7596+ >mRNA_H-paniculata_contig8253.16271.1 ID=mRNA_H-paniculata_contig8253.16271.1|Name=mRNA_H-paniculata_contig8253.16271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig8253:6847..7596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |