mRNA_H-paniculata_contig8219.16242.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8219.16242.1
Unique NamemRNA_H-paniculata_contig8219.16242.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: D7G6A0_ECTSI (Flagellar inner arm dynein light chain Tctex1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6A0_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 4.410e-69
Identity = 99/107 (92.52%), Postives = 102/107 (95.33%), Query Frame = 1 
Query:    1 MDFQDDAAEFSVEDVDTIVKNAITGCLTDVMYNPKKELQSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAVHIDNANEMEA 321
            MDFQDDAAEFS EDVDTIVKNAITGCLTDVMYNPKKELQ LNKPYKYIIT IIMQKNGAGV+TCASMVWD TKDN CQVPWENQNMHCIVTVYGCAVHIDNANE+E+
Sbjct:    1 MDFQDDAAEFSSEDVDTIVKNAITGCLTDVMYNPKKELQPLNKPYKYIITCIIMQKNGAGVNTCASMVWDTTKDNFCQVPWENQNMHCIVTVYGCAVHIDNANELES 107
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: A0A835YRL3_9STRA (Flagellar inner arm dynein light chain Tctex1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL3_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.560e-55
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 MDFQDDAAEFSVEDVDTIVKNAITGCLTDVMYNPKK--------------ELQSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAVHIDNANEME 318
            MDF DDAA++SVEDVDTIVKNAI GCLTDV YN KK              ELQSLNKP+KYIIT IIMQKNGAG++T A+M WDP KDN CQVPWENQNMHCIVTVYGCAV+IDN +E++
Sbjct:    1 MDFADDAAKYSVEDVDTIVKNAIAGCLTDVTYNAKKVTDWTNHIVDNCLRELQSLNKPFKYIITCIIMQKNGAGLNTSATMFWDPEKDNYCQVPWENQNMHCIVTVYGCAVNIDNTHELD 120
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: A0A6U1NWB1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NWB1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.870e-43
Identity = 72/120 (60.00%), Postives = 85/120 (70.83%), Query Frame = 1 
Query:    1 MDFQDDAAEFSVEDVDTIVKNAITGCLTDVMYNPKK--------------ELQSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAVHIDNANEME 318
            M+FQDDAAEFS EDV+T  KNAI  CL    Y  KK              ELQS+N+PYKY++T IIMQKNGAG++T ASM WD TKD LC+V WEN  +HCIVTV+G AVHIDN NE++
Sbjct:    1 MEFQDDAAEFSQEDVETTAKNAIRSCLDKHNYQAKKVDDWTNTIVDTCLKELQSMNRPYKYVVTCIIMQKNGAGMNTTASMFWDTTKDGLCKVYWENHTIHCIVTVFGLAVHIDNQNELD 120
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: A0A482SIW0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIW0_9ARCH)

HSP 1 Score: 119 bits (297), Expect = 3.700e-32
Identity = 59/118 (50.00%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    7 FQDDAAEFSVEDVDTIVKNAITGCLTDVMYNPKK--------------ELQSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAVHIDNANEME 318
            FQDD+AEFS EDV+ IV+ AI   L D  YN KK              +LQ L +P+KYIIT +IMQK GAG++T  SM WD  KD  C+VPW+N  M C VTVYG +V+ID+  +++
Sbjct:   28 FQDDSAEFSTEDVEGIVRLAIQNSLNDASYNSKKVNEWTNNIVTNCLKDLQGLGRPFKYIITCMIMQKTGAGLNTTTSMFWDTAKDGYCKVPWQNNTMTCTVTVYGLSVNIDDPQDVD 145
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: A0A7S3JST1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JST1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.260e-31
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 1 
Query:   16 DAAEFSVEDVDTIVKNAITGCLTDVMYNPKK--------------ELQSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAVHIDNANEME 318
            D   F  ED+++IVKNAIT  L+D +YN KK              ELQSLN+P+KY++T  IMQKNGAG+ T  +++WD +KD L  +PWEN +MH I+TV+G A+++DN  EM+
Sbjct:    2 DDESFPQEDIESIVKNAITSTLSDHLYNSKKVNDWINSIVDACLKELQSLNRPFKYVVTCGIMQKNGAGLDTGVALIWDHSKDGLVCIPWENTSMHVIITVFGLALNVDNLAEMD 116
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: A0A7S2DAW6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAW6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.670e-31
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:   28 FSVEDVDTIVKNAITGCLTDVMYNPKK--------------ELQSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAVHIDNANEME 318
            FS EDVD+IVK AIT  L DVMYN KK              EL+ L +P++YI+T IIMQKNGAG++T A+M WD +KD  C V W N  M+ +VTV+G AV+IDN+ E++
Sbjct:    8 FSPEDVDSIVKLAITQNLADVMYNQKKVNDQINKIVDKCLEELRKLERPFRYIVTCIIMQKNGAGMNTAATMFWDTSKDGKCVVQWSNDTMNVVVTVFGLAVNIDNSGELD 118
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: A0A7R9W941_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W941_9STRA)

HSP 1 Score: 114 bits (286), Expect = 8.370e-31
Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:    7 FQDDAAEFSVEDVDTIVKNAITGCLTDVMYNPKKE--------------LQSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAVHIDNANEME 318
            FQD   EF VEDV+T++KNAI   L+D  Y   K               L+SLN+PYKY IT +I+QKNGAG+ + +S  WD +KD LC+V WEN  MHC+VTV+G +V++D+  E++
Sbjct:    4 FQDLGEEFVVEDVETVIKNAIGVVLSDASYISSKANDWSNSVISAALKGLESLNRPYKYCITVMIVQKNGAGLVSASSTYWDASKDGLCKVTWENSTMHCVVTVFGTSVNVDSPTELD 121
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: F0YFG3_AURAN (Uncharacterized protein DLC1 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFG3_AURAN)

HSP 1 Score: 112 bits (279), Expect = 8.380e-30
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:   16 DAAEFSVEDVDTIVKNAITGCLTDVMYNPK--------------KELQSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAVHIDNANEME 318
            D  +F  ED++ +VKNAI+ CL++  Y  K              KELQ+LN+P+KYI+T IIMQKNGAG+ T A++ WD  KD L  +PWEN  M  +VTV+G A+++DN  E++
Sbjct:    2 DEDQFPQEDIENLVKNAISACLSEFQYQAKLVNNKIHAIVDACLKELQTLNRPFKYIVTCIIMQKNGAGLDTGAALFWDNAKDGLVCIPWENSQMSVVVTVFGTALNVDNLAELD 116
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: A0A5D6Y129_9STRA (Uncharacterized protein n=2 Tax=Pythium TaxID=4797 RepID=A0A5D6Y129_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.520e-25
Identity = 51/104 (49.04%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:   22 AEFSVEDVDTIVKNAITGCLTDVMYNPKKEL--------------QSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAV 291
            +EFS EDV  I K AI   L D +YN KK L              Q+LNKP+KY +T +IMQK GAG++T AS  WDPT D  C V WEN  ++C+V VYG A+
Sbjct:    6 SEFSQEDVLPIAKTAIEAALKDAVYNRKKVLDWSNTLVATVLTGLQNLNKPFKYAVTCMIMQKTGAGMATAASCYWDPTLDGYCTVLWENSTIYCMVAVYGAAI 109
[Close]
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Match: A0A0P1ABG3_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABG3_PLAHL)

HSP 1 Score: 98.6 bits (244), Expect = 1.830e-24
Identity = 52/104 (50.00%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:   22 AEFSVEDVDTIVKNAITGCLTDVMYNPKKEL--------------QSLNKPYKYIITSIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAV 291
            +EFS EDV  I K AI   L D +YN KK L              QSLNKP+KY +T +IMQK GAG++T A+  WD T D  C V WEN  ++CIVTVYG A+
Sbjct:    6 SEFSQEDVLPIAKMAIEAALKDTVYNRKKVLDWSNTLVATVLAGLQSLNKPFKYAVTCLIMQKTGAGMATAAACFWDTTMDGNCTVLWENSTINCIVTVYGVAI 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8219.16242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6A0_ECTSI4.410e-6992.52Flagellar inner arm dynein light chain Tctex1 n=2 ... [more]
A0A835YRL3_9STRA3.560e-5571.67Flagellar inner arm dynein light chain Tctex1 n=1 ... [more]
A0A6U1NWB1_9STRA3.870e-4360.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SIW0_9ARCH3.700e-3250.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3JST1_9STRA1.260e-3148.70Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2DAW6_9STRA7.670e-3152.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9W941_9STRA8.370e-3147.46Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
F0YFG3_AURAN8.380e-3046.09Uncharacterized protein DLC1 n=1 Tax=Aureococcus a... [more]
A0A5D6Y129_9STRA4.520e-2549.04Uncharacterized protein n=2 Tax=Pythium TaxID=4797... [more]
A0A0P1ABG3_PLAHL1.830e-2450.00Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8219contigH-paniculata_contig8219:4807..9959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue2e-52
Seed eggNOG ortholog2880.D7G6A0
KEGG koko:K10420
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular transport of viral protein in host cell
EggNOG OGsKOG4081@1,KOG4081@2759
Ec32 ortholog descriptionflagellar inner arm dynein light chain Tctex1
Ec32 orthologEc-10_001080.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size324
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8219.16242.1prot_H-paniculata_contig8219.16242.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8219 4807..9959 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.86852-CDS-H-paniculata_contig8219:4806..49141622931030.86852-CDS-H-paniculata_contig8219:4806..4914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8219 4807..4914 +
1691481558.271425-CDS-H-paniculata_contig8219:4806..49141691481558.271425-CDS-H-paniculata_contig8219:4806..4914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8219 4807..4914 +
1622931030.8964088-CDS-H-paniculata_contig8219:8666..87921622931030.8964088-CDS-H-paniculata_contig8219:8666..8792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8219 8667..8792 +
1691481558.2821417-CDS-H-paniculata_contig8219:8666..87921691481558.2821417-CDS-H-paniculata_contig8219:8666..8792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8219 8667..8792 +
1622931030.9297976-CDS-H-paniculata_contig8219:9869..99591622931030.9297976-CDS-H-paniculata_contig8219:9869..9959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8219 9870..9959 +
1691481558.2911344-CDS-H-paniculata_contig8219:9869..99591691481558.2911344-CDS-H-paniculata_contig8219:9869..9959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8219 9870..9959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8219.16242.1

>prot_H-paniculata_contig8219.16242.1 ID=prot_H-paniculata_contig8219.16242.1|Name=mRNA_H-paniculata_contig8219.16242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MDFQDDAAEFSVEDVDTIVKNAITGCLTDVMYNPKKELQSLNKPYKYIIT
SIIMQKNGAGVSTCASMVWDPTKDNLCQVPWENQNMHCIVTVYGCAVHID
NANEMEA*
back to top

mRNA from alignment at H-paniculata_contig8219:4807..9959+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8219.16242.1 ID=mRNA_H-paniculata_contig8219.16242.1|Name=mRNA_H-paniculata_contig8219.16242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5153bp|location=Sequence derived from alignment at H-paniculata_contig8219:4807..9959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTTTCAGGACGATGCTGCTGAGTTTTCCGTCGAGGATGTTGACAC
GATTGTCAAGAACGCTATCACGGGGTGCCTCACAGATGTCATGTACAACC
CCAAGAAGGTTAGTAGTTGGTTTCCCCTGAACAGTAATAATAGTCGGGCT
GTCGTATGGTTGGCAAACGTGCTGGTGTGTAGACTTGGCGAATCAAGGCA
CATAAATGTGGTTGCTTTAGAGAGGCCCACTCATATTTGCGAATCACGTC
TTAAAAATGTATCGAGCCCGCGTCATCGGGCTTATTCACTCAATGTCAAA
CACTACTACAGTATGTACGGTAGCGGGGTTTAAGTGGACATGCATGTCTG
AAACGAGCAGGGGATGCGGGACATTATACACACAAACGCACCATGTTCCC
CGTGTTTTCGAATTTAACGGGTTTCAGGGGGGGGGGGGGGTGCCTACTGG
TACTCTTCTAGGTCTATACTATAATAGCGCAAGGCCTTGTATTTGGTCAA
TAAGTATGTCGAAAATGGCGCCGGTAGGGTCGAGCTTTCTATTCTAGACT
ATTTCAGACCTTACCGCGGAATTCAATGGCTGTGCCGTGGAGTTCCTTGC
AGCTATTATTTTTCGATGCAAATTTCAAACTTGAATTTATACAAGCTCCG
AGTTTTTACTGATTGAACAGTGCAAACCCTAAATTTGAGCCGCATTAAAA
AAGTTGCACATTTCACGTGTAGCACACATCGTATTATTGGGGACGGCGCG
CCCAAAACACTTAGCCCATCAGTGTGGTAGCTACAAATTGCCTTCCAGCC
ATCACATTAGCACAGGAGCAACACTTCCGCGCTTCCAAAGCGTTATCTGC
GTACACTTAACGGTCTTTGCACCGTGGGACAATTACTAGTATTTTTTTAA
TTCACAGTTACACTCCAAAGAGGTGGCTGCTACCAATGGCCCTGAGTTAG
CCACCGGTATTTGCAAACTGTGTGATATTTCCAAGCTCGGCGGGGGGCAG
AGTGGTGACGGACGGCTTGAGAGCTCCAAGAACCTCACCTTGCTGATATT
ATGAAAGATTTCCTTTCGACGGGATGATATGTATCTCCTTGTACATATCC
TGTGGTTTTGACACACCACCAATATTTCGGCGTGGTTCGGCGTTTTTTTG
AGTTTTTTTTACCCCCGGAAGGCTGAGGCAAAAACCTTTACCGATGCTTC
CATACTGAAGTATGTAAACCAAAGTATGTCTACATTTCCTTTAACAGAAC
AGAGTTATTGATTCCTCTGCGGGGTAGGCGCCGCCCCGGTTCGGCGGAAC
CAAGTAGGCAGTGTGGGGGTTGCACCTGCTGCTAAAACCCCTCTGACTAG
ACTTCCAGTCATGCTTAGTTCACGAGCTACCCTACCCATTCGGGCGTAGG
TCCGTGGCGGGAACTTTACTCTCTAGGGCTTCACTTCGCCACACGAACTT
TGCAAGATCAGCACACTTTAAATGATGTATTATTCTACTACTACTGTACT
AGTAATAGACATAATAAGTAAATATGTCGATTAAGGTGCACATAAGGCAC
CTCAAGCGCAAGTTGCTGGATTGTCAGAACGGCGAGGAATAGGAGAACTG
ACGAGATAGTGACAGATAGATATTTAAATCAGCTATGATGCGAGCTTTGG
AGAACGTAAAACGGATAAGAACTCATAGCAGGAGAGCCAGTGGAATGCCA
TAATTGTGACATAAGACTAATCACCCAAAACGACCTGTGACCAATTCAGA
TACACCTTACGAAGCAGCGAATTGCACACGACCTGGAACACGCCAGATCC
TGAAATTTGGCACAAACGTTGGTGAACGGGTGACGGGCATGCCATAAAAT
GAAGAATGAAAGAAGATTCATCCGAGGATGAAATCAGTGTATCCCCGTAT
TTTCGGAAACAACAATTAGTGTACCATGGCGGTACTTGACCCTGCCATAC
TAATGGGAGACGGCATGCAAAGTTTGAGGTGAATGGAAGTCGATTACGAC
AGCACTCCAATCGGTCTTCACTGAAACAAATCAACGTTTTTTTCTTTTTT
TAGCCTTGTCATGAAAACAAATACAACCGCTTCTGCAGCCAAAATCTCCA
GTGAACCACGGCGGTGCTTGACCACACTGTACTTTACCAAAACAAGTTTA
ATTTTTCAGATTTTTTTTCGGGGTGTTTAGTTCATGCTTATGGAAGACGG
CGTTTAAAATCATAGATGAATCGGAGTCCATTGCGATAGCGTTCTGGTCA
TTTGCTTCTGAAGACCCGAGATATTTTTATCTTGCCCACTACAAAGACTA
AGTGAAAACCGTAGCCAAGAATCACTACTGTTGTATATAGGACTCTGTCG
TCTGTACGCACTCTTCCGTTGAGGTGCTTCTGAATCGATCAAAGAAAAAC
ACGAAAGCGCGTGTGCAATATGTGACAGTTGTATGCTCTACTGAATACTG
TGATTGATATTACTAACAGCAGTAGTGCAAATACAGTATCGTGCTTTGAT
GAATAAGTGTAGCACGATATACGATGCGGAGAAATACAGTAGGAATTTCG
CTGCATGCCGTTACGTTTCCAGAATTATGGATAGTCCTCACAATAACAAT
CAAGGAATGTTCCATAGGTTTATAGATCGATAAAGGGGAGCCCCACTTAG
CCCACTTCCATTTCCAACCAATCAAGCCAAGGTTTCTAGCCTGTGAGTTC
AGTAGACGGGTCACTGCAGCAGTAGAGGTTATTACCAGAGAGGGCAAGAC
GAGATTATTAAAATAAAAGATCTTGTCCAGCGCACGCCTAGACTCCGCAG
AGGAGAGTCTAAGGGGGAAGCCGTGCCAGCTTTCAACAGCAAAGAATGTC
GAACACGGTACTACGGTAGCTCCTGCACCTACTGCGTACCGCTGCAACAG
CCTATTTCCGGAGTGCTGTGTGCGTTCTGTCGCTCTTCCTTCCTATTTTT
GGTCGATTTTTTGCCTCTACCTGAAAAAAACGAGATATAGCTTGCGTGTG
GTGCCTTCTCTCGATACTGGCTGAGCGGTGTACCTTGCTGAGCATCTCAA
ACGACGTGGCTTGTTCTTTTAAACAATTCGGTATTACCAATGTGGAAAAT
GATGAAGTTATGGATGATGCTAAAATGGTGTATCTTAATAGGACGTGTAT
CCTAATAGGCATACTGGAGTATTTACCTCTAGCCATTAGTACGATCGTGC
ACTTGCACTTGCTCCTTATCCTCGACCGACGACGTCATTGTACTCGCAGT
GGCTCGCTATATGGGCAGGAAAACTCGTATTTACGGTGTTATTTCAGTAC
AGATTTGAAAACTTGTTCCGGAACGACAACGACGACGACGACGGCGATCA
TATTTGATTAAATATGAAGGGCTCCTAGTCGTACTATATAAATATCGTCA
TAGTGGTGTCTAATAGAGTTTCTTCAGTACAACTTGCGCTGAAGGAACCG
GACGTTGAAACGCCGAACAGGCTATACGGACAGTATAAAGCAGTTTGATT
ACGTCGAGGCATATGCTGAATACACTAAAACTGCGTATACCATACATCCC
ACGAACATCATCGGTACTGATTGATGTGTACCTACCAACCCATTAGTGTA
CGTTGTACCGGCTGCTGCGCCTTGCTTTGAGTAAGCTTGAGGCTTATTGT
TGCCTCCGAATATCGTGGATCCTATGCCGTTCCTTCCATGGCTAAATACG
CATTCAAACTGTCCCATTCAGAGGACGTAGTTCTCACGCTCGAATCAATA
AACAGTGGCTGTAAGAAGCAAGACATAAGCTAAAATAGCGCATGTTGTCG
ACACGGAATAAACCTCAGGTGACCGACTGGACAAACACGATCGTCGACAA
CTGTCTCAAGGAGCTTCAGTCACTCAACAAGCCCTACAAATACATCATCA
CATCGATCATCATGCAAAAGAACGGGGCTGGGGTTAGTACATGCGCGTCA
ATGGTGTGGGATCCAACGAAAGATAACTTGTGCCAGGTGAGGAGAAAAAC
AGCGCCGAACGCCAGTTTCATATCTCTTGCGTTTTTCTGTAGAAGTTGAC
TCATGGTGCTATTTATACTATTATTTCTTAAATAGACGTGTACATATATG
TGTATCACCTGCAGCAGTACACTGCAAGAAGGCTGGCACCCCTCCCGCAC
TGAGTACTAATTGTTCAAGGTGTAGCAAGCCATGCGTTTAGTTGACTCCA
CCATCGCCCCCACCCAACCCCTCACGGTTAGAGCGGCGGTACCGTTGAAG
CATATCCCACAGCATATCCATATAAAGAAGTCGAATCATACAAGAAATCA
TACAAGAAACACCGAAGTTCCTCACCCGGAGGAGATAGTCATAGTCTACT
GCCGATATACAATCGACGAACCTCCGAAATTACCATCTGCTCGGGTCGAG
CGCCTTCCAGCGCCGCACACAAAAACACTGTAAGTGTTATTCAACCCCAG
TCACCAACGGACACGTCATCCATCGTGTAAAATAATACGAAAGTACCGTA
TATAACCCAGGGTCCCCATCTCAAACTTGGGTCCCCATTTCACCAATATG
CTGTTTTGCTTAGCTTAGCAATGAGTTACGACGCCAGTTGTACAATTTGA
TCTTTCCTATATATACCCAGGGTCCCCATCTCAAACTTGGGTTCCCATTT
CACCAATATGCTGTTGCAAGTGTTTCACAGATATGTCTTGTAAAAACACA
ATTGTAAACCGGTCGCCTGTGAATACCCCCTCCTTGTCTTGACATCGTAC
CGGATCTACTAAACACGTCCAAACATCTACCCGTGGTCGTCGGACCGTTT
TCCCACTACGTGTTCTCGCATTTTCGTGAGATAGCTGCGCCCGTTGATGT
ACAATGTATTGCGGGAGAGGCAACGGCCTGGCAAAACGAGGGTTGCTGTG
GACAGGAGAGTAAATAAGGCACTGTGTCCTCGAGGACGAATTTTCCCATC
GTCTAAATACCAACTAGGGCAGGCGAAACATGGGTACGTCCCCCCGGCTC
ACCTCCATTCACTGCTGTATACTGCCCCTCCCCGCTGTCTCTCTCCTGTC
GTTGTGAGTGCAGGTTCCCTGGGAAAACCAAAATATGCATTGCATCGTCA
CAGTGTATGGGTGCGCCGTTCATATCGACAACGCGAACGAGATGGAGGCA
TGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8219:4807..9959+

>mRNA_H-paniculata_contig8219.16242.1 ID=mRNA_H-paniculata_contig8219.16242.1|Name=mRNA_H-paniculata_contig8219.16242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig8219:4807..9959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTTTCAGGACGATGCTGCTGAGTTTTCCGTCGAGGATGTTGACAC
GATTGTCAAGAACGCTATCACGGGGTGCCTCACAGATGTCATGTACAACC
CCAAGAAGATGGATTTTCAGGACGATGCTGCTGAGTTTTCCGTCGAGGAT
GTTGACACGATTGTCAAGAACGCTATCACGGGGTGCCTCACAGATGTCAT
GTACAACCCCAAGAAGGAGCTTCAGTCACTCAACAAGCCCTACAAATACA
TCATCACATCGATCATCATGCAAAAGAACGGGGCTGGGGTTAGTACATGC
GCGTCAATGGTGTGGGATCCAACGAAAGATAACTTGTGCCAGGAGCTTCA
GTCACTCAACAAGCCCTACAAATACATCATCACATCGATCATCATGCAAA
AGAACGGGGCTGGGGTTAGTACATGCGCGTCAATGGTGTGGGATCCAACG
AAAGATAACTTGTGCCAGGTTCCCTGGGAAAACCAAAATATGCATTGCAT
CGTCACAGTGTATGGGTGCGCCGTTCATATCGACAACGCGAACGAGATGG
AGGCATGAGTTCCCTGGGAAAACCAAAATATGCATTGCATCGTCACAGTG
TATGGGTGCGCCGTTCATATCGACAACGCGAACGAGATGGAGGCATGA
back to top