mRNA_H-paniculata_contig8212.16237.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8212.16237.1
Unique NamemRNA_H-paniculata_contig8212.16237.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: D8LMI5_ECTSI (S4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMI5_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.140e-16
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLLE 162
            G + +  RMLANAGYPVLELRRERYGKI LGDL EG+H PV G  L WARS+L+
Sbjct:  317 GKNRMVRRMLANAGYPVLELRRERYGKILLGDLPEGEHVPVSGDALEWARSVLQ 370
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: A0A7S4K2B5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K2B5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.390e-11
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLLEEAQ 171
            G H +  RML NAGYPV ELRRER+G++ LGDL  G  + + G E +WA +LLE+ Q
Sbjct:  122 GKHRMVRRMLFNAGYPVAELRRERHGRVTLGDLDVGRFRELNGEEESWAMNLLEKTQ 178
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: A0A7S2JZM0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZM0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.030e-9
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLLE 162
            G H +  RMLAN G+PV+ELRRER+G + LGDL EG  + +   EL WA  +++
Sbjct:  201 GKHRMVRRMLANCGFPVIELRRERHGVVWLGDLEEGAFRDLNPEELEWAEGVID 254
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: A0A1Z5JHT9_FISSO (23S rRNA pseudouridine2605 synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHT9_FISSO)

HSP 1 Score: 59.3 bits (142), Expect = 7.550e-9
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLLEEAQS 174
            G + +  R+LAN G+ V++LRRER G+I+LGDL EG  + +   ELAWA  +L+  QS
Sbjct:  257 GKYRMVRRILANCGHEVVDLRRERLGRIQLGDLPEGKVRDLTADELAWAEQVLQGKQS 314
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: K0QY66_THAOC (PseudoU_synth_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QY66_THAOC)

HSP 1 Score: 57.0 bits (136), Expect = 5.230e-8
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLL 159
            G H +  R+LAN GYPV+EL+R R+G+IRL +L  G+ +     E+ WA SLL
Sbjct:  314 GKHRMVRRILANCGYPVVELKRLRHGEIRLRELPPGEFRNCSNEEIEWAESLL 366
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: A0A7S2E814_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E814_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.930e-7
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLL 159
            G + +  RMLAN GYPV+EL+R R+G++ L DL  G  +     EL W  SLL
Sbjct:  127 GKYRMVRRMLANCGYPVIELKRIRHGEVTLNDLEVGQFRVATSEELKWIESLL 179
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: A0A1E7FAJ1_9STRA (Pseudouridine synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAJ1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.420e-7
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLLE 162
            G H +  R+LAN+GYPV+ L+RER G I L DL  G  + +   E  WARSLL+
Sbjct:  137 GKHRMVRRILANSGYPVIGLKRERLGIITLSDLHPGCARDLTPEEEKWARSLLK 190
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: A0A7S4VQ64_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VQ64_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.770e-7
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLL 159
            G + +  RMLAN GYPV+EL+R R+G++ L DL  G  +     EL W  SLL
Sbjct:  387 GKYRMVRRMLANCGYPVIELKRIRHGEVTLNDLEVGQFRVATSEELKWIESLL 439
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: A0A7S4SX71_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SX71_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.770e-7
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLL 159
            G + +  RMLAN GYPV+EL+R R+G++ L DL  G  +     EL W  SLL
Sbjct:  400 GKYRMVRRMLANCGYPVIELKRIRHGEVTLNDLEVGQFRVATSEELKWIESLL 452
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BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Match: A0A835YWQ3_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.980e-6
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 GTHPICCRMLANAGYPVLELRRERYGKIRLGD-LAEGDHKPVMGAELAWARSL 156
            G + +  RMLANAGYPV+EL R RYG I + + L  G   PV+G+ L WA+ L
Sbjct:  167 GKYRMVRRMLANAGYPVVELHRTRYGDIVMDENLQPGQCAPVVGSALTWAQWL 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8212.16237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LMI5_ECTSI4.140e-1670.37S4 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S4K2B5_9STRA2.390e-1154.39Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2JZM0_9STRA2.030e-950.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5JHT9_FISSO7.550e-948.2823S rRNA pseudouridine2605 synthase n=2 Tax=Fistul... [more]
K0QY66_THAOC5.230e-849.06PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S2E814_9STRA1.930e-747.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FAJ1_9STRA4.420e-750.00Pseudouridine synthase n=1 Tax=Fragilariopsis cyli... [more]
A0A7S4VQ64_9STRA4.770e-747.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4SX71_9STRA4.770e-747.17Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A835YWQ3_9STRA1.980e-650.94Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8212contigH-paniculata_contig8212:10303..10479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D8LMI5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.enzyme-directed rRNA pseudouridine synthesis
EggNOG OGs2QT4T@2759,COG1187@1
Ec32 ortholog descriptionPseudouridine synthase, RsuA/RluB/C/D/E/F
Ec32 orthologEc-05_002890.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size153
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.2768688-CDS-H-paniculata_contig8212:10302..104551622931030.2768688-CDS-H-paniculata_contig8212:10302..10455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8212 10303..10455 -
1691481558.0870795-CDS-H-paniculata_contig8212:10302..104551691481558.0870795-CDS-H-paniculata_contig8212:10302..10455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8212 10303..10455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.2936137-UTR-H-paniculata_contig8212:10455..104791622931030.2936137-UTR-H-paniculata_contig8212:10455..10479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8212 10456..10479 -
1691481558.098762-UTR-H-paniculata_contig8212:10455..104791691481558.098762-UTR-H-paniculata_contig8212:10455..10479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8212 10456..10479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8212.16237.1prot_H-paniculata_contig8212.16237.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8212 10303..10455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8212.16237.1

>prot_H-paniculata_contig8212.16237.1 ID=prot_H-paniculata_contig8212.16237.1|Name=mRNA_H-paniculata_contig8212.16237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MLANAGYPVLELRRERYGKIRLGDLAEGDHKPVMGAELAWARSLLEEAQS
*
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mRNA from alignment at H-paniculata_contig8212:10303..10479-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8212.16237.1 ID=mRNA_H-paniculata_contig8212.16237.1|Name=mRNA_H-paniculata_contig8212.16237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig8212:10303..10479- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACACATCCAATATGCTGCAGGATGCTCGCAAACGCGGGATATCCTGT
GTTGGAACTGCGCCGGGAACGGTACGGAAAAATACGATTGGGCGACCTCG
CTGAAGGCGACCATAAGCCTGTGATGGGCGCAGAGCTTGCCTGGGCACGG
TCTCTCTTGGAAGAAGCTCAAAGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8212:10303..10479-

>mRNA_H-paniculata_contig8212.16237.1 ID=mRNA_H-paniculata_contig8212.16237.1|Name=mRNA_H-paniculata_contig8212.16237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig8212:10303..10479- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGCAAACGCGGGATATCCTGTGTTGGAACTGCGCCGGGAACGGTA
CGGAAAAATACGATTGGGCGACCTCGCTGAAGGCGACCATAAGCCTGTGA
TGGGCGCAGAGCTTGCCTGGGCACGGTCTCTCTTGGAAGAAGCTCAAAGC
TAGATGCTCGCAAACGCGGGATATCCTGTGTTGGAACTGCGCCGGGAACG
GTACGGAAAAATACGATTGGGCGACCTCGCTGAAGGCGACCATAAGCCTG
TGATGGGCGCAGAGCTTGCCTGGGCACGGTCTCTCTTGGAAGAAGCTCAA
AGCTAG
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